RNA–Protein interactions for RNA: ENST00000343508.7

CSMD3-203, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best) BASIC

Gene CSMD3, Length 13,018 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-203ENST00000343508 PCDHB12Q9Y5F1 795 aa4.85□□□□□ -1.63
CSMD3-203ENST00000343508 NFASCO94856 1347 aa4.85□□□□□ -1.63
CSMD3-203ENST00000343508 PRR23AA6NEV1 266 aa4.85□□□□□ -1.63
CSMD3-203ENST00000343508 PRR23D1E9PI22 279 aaPredicted RBP4.85□□□□□ -1.63
CSMD3-203ENST00000343508 PRR23D2P0DMB1 279 aaPredicted RBP4.85□□□□□ -1.63
CSMD3-203ENST00000343508 TSTA3Q13630 321 aaPredicted RBP4.85□□□□□ -1.63
CSMD3-203ENST00000343508 TSNQ15631 228 aaKnown RBP4.85□□□□□ -1.63
CSMD3-203ENST00000343508 A6NHS1 94 aa4.85□□□□□ -1.63
CSMD3-203ENST00000343508 RECQL5O94762 991 aaPredicted RBP4.85□□□□□ -1.63
CSMD3-203ENST00000343508 FOXN2P32314 431 aa4.85□□□□□ -1.63
CSMD3-203ENST00000343508 TTLL9Q3SXZ7 439 aa4.85□□□□□ -1.63
CSMD3-203ENST00000343508 PTAR1Q7Z6K3 402 aaPredicted RBP4.85□□□□□ -1.63
CSMD3-203ENST00000343508 SLC4A11Q8NBS3 891 aa4.85□□□□□ -1.63
CSMD3-203ENST00000343508 ZNF420Q8TAQ5 688 aaPredicted RBP4.85□□□□□ -1.63
CSMD3-203ENST00000343508 CD101Q93033 1021 aa4.85□□□□□ -1.63
CSMD3-203ENST00000343508 ZNF668Q96K58 619 aaPredicted RBP4.85□□□□□ -1.63
CSMD3-203ENST00000343508 PNPOQ9NVS9 261 aa4.85□□□□□ -1.63
CSMD3-203ENST00000343508 CLEC11AQ9Y240 323 aa4.85□□□□□ -1.63
CSMD3-203ENST00000343508 MDM4O15151 490 aa4.85□□□□□ -1.63
CSMD3-203ENST00000343508 ATP5F1P24539 256 aaPredicted RBP4.85□□□□□ -1.63
CSMD3-203ENST00000343508 BACE1P56817 501 aa4.85□□□□□ -1.63
CSMD3-203ENST00000343508 VAC14Q08AM6 782 aa4.85□□□□□ -1.63
CSMD3-203ENST00000343508 NOMO1Q15155 1222 aa4.85□□□□□ -1.63
CSMD3-203ENST00000343508 MAPK11Q15759 364 aa4.85□□□□□ -1.63
CSMD3-203ENST00000343508 BBS7Q8IWZ6 715 aa4.85□□□□□ -1.63
CSMD3-203ENST00000343508 UNC5BQ8IZJ1 945 aa4.85□□□□□ -1.63
CSMD3-203ENST00000343508 ZNF540Q8NDQ6 660 aa4.85□□□□□ -1.63
CSMD3-203ENST00000343508 FIG4Q92562 907 aa4.85□□□□□ -1.63
CSMD3-203ENST00000343508 C19orf60Q96EN9 201 aa4.85□□□□□ -1.63
CSMD3-203ENST00000343508 MID1IP1Q9NPA3 183 aa4.85□□□□□ -1.63
CSMD3-203ENST00000343508 INTS10Q9NVR2 710 aaKnown RBP4.85□□□□□ -1.63
CSMD3-203ENST00000343508 UBAP1Q9NZ09 502 aa4.85□□□□□ -1.63
CSMD3-203ENST00000343508 CDV3Q9UKY7 258 aaKnown RBP4.85□□□□□ -1.63
CSMD3-203ENST00000343508 HS6ST1O60243 411 aa4.85□□□□□ -1.63
CSMD3-203ENST00000343508 FAM189A1O60320 539 aa4.85□□□□□ -1.63
CSMD3-203ENST00000343508 CAPN1P07384 714 aa4.85□□□□□ -1.63
CSMD3-203ENST00000343508 TRIP4Q15650 581 aaPredicted RBP4.85□□□□□ -1.63
CSMD3-203ENST00000343508 TAB1Q15750 504 aa4.85□□□□□ -1.63
CSMD3-203ENST00000343508 KCTD19Q17RG1 926 aaPredicted RBP4.85□□□□□ -1.63
CSMD3-203ENST00000343508 CDCA2Q69YH5 1023 aaPredicted RBP4.85□□□□□ -1.63
CSMD3-203ENST00000343508 ADGRG6Q86SQ4 1221 aa4.85□□□□□ -1.63
CSMD3-203ENST00000343508 TTC30BQ8N4P2 665 aa4.85□□□□□ -1.63
CSMD3-203ENST00000343508 STAG3L4Q8TBR4 150 aa4.85□□□□□ -1.63
CSMD3-203ENST00000343508 SYTL5Q8TDW5 730 aaPredicted RBP4.85□□□□□ -1.63
CSMD3-203ENST00000343508 USP33Q8TEY7 942 aa4.85□□□□□ -1.63
CSMD3-203ENST00000343508 ZHX1-C8orf76Q96EF9 292 aa4.85□□□□□ -1.63
CSMD3-203ENST00000343508 MARK4Q96L34 752 aa4.85□□□□□ -1.63
CSMD3-203ENST00000343508 CLEC4MQ9H2X3 399 aaPredicted RBP4.85□□□□□ -1.63
CSMD3-203ENST00000343508 CCNB1IP1Q9NPC3 277 aa4.85□□□□□ -1.63
CSMD3-203ENST00000343508 EXOSC4Q9NPD3 245 aaKnown RBP4.85□□□□□ -1.63
CSMD3-203ENST00000343508 A0A0J9YYE9 177 aa4.84□□□□□ -1.63
CSMD3-203ENST00000343508 CCDC182A6NF36 153 aa4.84□□□□□ -1.63
CSMD3-203ENST00000343508 FOXO6A8MYZ6 492 aa4.84□□□□□ -1.63
CSMD3-203ENST00000343508 RRM2P31350 389 aa4.84□□□□□ -1.63
CSMD3-203ENST00000343508 CCDC142Q17RM4 750 aa4.84□□□□□ -1.63
CSMD3-203ENST00000343508 ZNF829Q3KNS6 432 aaPredicted RBP4.84□□□□□ -1.63
CSMD3-203ENST00000343508 ANKRD52Q8NB46 1076 aa4.84□□□□□ -1.63
CSMD3-203ENST00000343508 DCAKDQ8WVC6 231 aa4.84□□□□□ -1.63
CSMD3-203ENST00000343508 RBM4BQ9BQ04 359 aaKnown RBP4.84□□□□□ -1.63
CSMD3-203ENST00000343508 PDCD2LQ9BRP1 358 aa4.84□□□□□ -1.63
CSMD3-203ENST00000343508 RBM4Q9BWF3 364 aaKnown RBP4.84□□□□□ -1.63
CSMD3-203ENST00000343508 ADGRE3Q9BY15 652 aa4.84□□□□□ -1.63
CSMD3-203ENST00000343508 TXLNGYQ9BZA5 131 aa4.84□□□□□ -1.63
CSMD3-203ENST00000343508 PIF1Q9H611 641 aa4.84□□□□□ -1.63
CSMD3-203ENST00000343508 CD320Q9NPF0 282 aa4.84□□□□□ -1.63
CSMD3-203ENST00000343508 DYRK4Q9NR20 520 aa4.84□□□□□ -1.63
CSMD3-203ENST00000343508 GIN1Q9NXP7 522 aa4.84□□□□□ -1.63
CSMD3-203ENST00000343508 DDX43Q9NXZ2 648 aaKnown RBP4.84□□□□□ -1.63
CSMD3-203ENST00000343508 SMPD3Q9NY59 655 aaPredicted RBP4.84□□□□□ -1.63
CSMD3-203ENST00000343508 H2AFY2Q9P0M6 372 aaPredicted RBP4.84□□□□□ -1.63
CSMD3-203ENST00000343508 TULP3O75386 442 aa4.84□□□□□ -1.63
CSMD3-203ENST00000343508 CDH8P55286 799 aa4.84□□□□□ -1.63
CSMD3-203ENST00000343508 CEP78Q5JTW2 689 aa4.84□□□□□ -1.63
CSMD3-203ENST00000343508 TLDC1Q6P9B6 456 aa4.84□□□□□ -1.63
CSMD3-203ENST00000343508 RBM12BQ8IXT5 1001 aaKnown RBP4.84□□□□□ -1.63
CSMD3-203ENST00000343508 ZNF781Q8N8C0 355 aa4.84□□□□□ -1.63
CSMD3-203ENST00000343508 OR2T34Q8NGX1 318 aa4.84□□□□□ -1.63
CSMD3-203ENST00000343508 OR2T3Q8NH03 318 aa4.84□□□□□ -1.63
CSMD3-203ENST00000343508 BIRC8Q96P09 236 aa4.84□□□□□ -1.63
CSMD3-203ENST00000343508 LENG8Q96PV6 779 aaPredicted RBP4.84□□□□□ -1.63
CSMD3-203ENST00000343508 FAM49AQ9H0Q0 323 aaPredicted RBP4.84□□□□□ -1.63
CSMD3-203ENST00000343508 KRT84Q9NSB2 600 aa4.84□□□□□ -1.63
CSMD3-203ENST00000343508 MAGEL2Q9UJ55 1249 aa4.84□□□□□ -1.63
CSMD3-203ENST00000343508 WASF2Q9Y6W5 498 aa4.84□□□□□ -1.63
CSMD3-203ENST00000343508 DNAJA2O60884 412 aa4.84□□□□□ -1.63
CSMD3-203ENST00000343508 UPP2O95045 317 aa4.84□□□□□ -1.63
CSMD3-203ENST00000343508 SEC24AO95486 1093 aa4.84□□□□□ -1.63
CSMD3-203ENST00000343508 XPAP23025 273 aaPredicted RBP4.84□□□□□ -1.63
CSMD3-203ENST00000343508 LIMK2P53671 638 aa4.84□□□□□ -1.63
CSMD3-203ENST00000343508 MTX3Q5HYI7 312 aa4.84□□□□□ -1.63
CSMD3-203ENST00000343508 GJC2Q5T442 439 aaPredicted RBP4.84□□□□□ -1.63
CSMD3-203ENST00000343508 IL31Q6EBC2 164 aa4.84□□□□□ -1.63
CSMD3-203ENST00000343508 C3orf67Q6ZVT6 689 aa4.84□□□□□ -1.63
CSMD3-203ENST00000343508 TLK2Q86UE8 772 aa4.84□□□□□ -1.63
CSMD3-203ENST00000343508 OR56A4Q8NGH8 313 aa4.84□□□□□ -1.63
CSMD3-203ENST00000343508 LATS2Q9NRM7 1088 aa4.84□□□□□ -1.63
CSMD3-203ENST00000343508 DMAC2Q9NW81 257 aa4.84□□□□□ -1.63
CSMD3-203ENST00000343508 CRNNQ9UBG3 495 aaPredicted RBP4.84□□□□□ -1.63
CSMD3-203ENST00000343508 DLEC1Q9Y238 1755 aa4.84□□□□□ -1.63
CSMD3-203ENST00000343508 RGS14O43566 566 aa4.84□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms