RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 LDB1Q86U70 411 aaPredicted RBP10.51□□□□□ -0.73
LIMA1-201ENST00000341247 NDNQ99608 321 aa10.51□□□□□ -0.73
LIMA1-201ENST00000341247 PKMYT1Q99640 499 aa10.51□□□□□ -0.73
LIMA1-201ENST00000341247 TUBB6Q9BUF5 446 aa10.51□□□□□ -0.73
LIMA1-201ENST00000341247 CCDC106Q9BWC9 280 aa10.51□□□□□ -0.73
LIMA1-201ENST00000341247 WDR55Q9H6Y2 383 aaPredicted RBP10.51□□□□□ -0.73
LIMA1-201ENST00000341247 GLOD4Q9HC38 313 aa10.51□□□□□ -0.73
LIMA1-201ENST00000341247 RNF186Q9NXI6 227 aa10.51□□□□□ -0.73
LIMA1-201ENST00000341247 GMIPQ9P107 970 aa10.51□□□□□ -0.73
LIMA1-201ENST00000341247 SOX13Q9UN79 622 aa10.51□□□□□ -0.73
LIMA1-201ENST00000341247 RUVBL2Q9Y230 463 aaKnown RBP10.51□□□□□ -0.73
LIMA1-201ENST00000341247 WASF2Q9Y6W5 498 aa10.51□□□□□ -0.73
LIMA1-201ENST00000341247 J3KR12 359 aa10.5□□□□□ -0.73
LIMA1-201ENST00000341247 DCXO43602 365 aa10.5□□□□□ -0.73
LIMA1-201ENST00000341247 BUD23O43709 281 aaKnown RBP10.5□□□□□ -0.73
LIMA1-201ENST00000341247 GJB3O75712 270 aa10.5□□□□□ -0.73
LIMA1-201ENST00000341247 PDHA1P08559 390 aa10.5□□□□□ -0.73
LIMA1-201ENST00000341247 MPSTP25325 297 aa10.5□□□□□ -0.73
LIMA1-201ENST00000341247 IDH3AP50213 366 aa10.5□□□□□ -0.73
LIMA1-201ENST00000341247 IRF5Q13568 498 aa10.5□□□□□ -0.73
LIMA1-201ENST00000341247 DSC3Q14574 896 aa10.5□□□□□ -0.73
LIMA1-201ENST00000341247 PHTF2Q8N3S3 785 aa10.5□□□□□ -0.73
LIMA1-201ENST00000341247 CCNYL1Q8N7R7 359 aa10.5□□□□□ -0.73
LIMA1-201ENST00000341247 DDX51Q8N8A6 666 aaKnown RBP eCLIP10.5□□□□□ -0.73
LIMA1-201ENST00000341247 SUSD3Q96L08 255 aa10.5□□□□□ -0.73
LIMA1-201ENST00000341247 OSBPL1AQ9BXW6 950 aa10.5□□□□□ -0.73
LIMA1-201ENST00000341247 TLE6Q9H808 572 aa10.5□□□□□ -0.73
LIMA1-201ENST00000341247 PRDM16Q9HAZ2 1276 aa10.5□□□□□ -0.73
LIMA1-201ENST00000341247 IPO11Q9UI26 975 aaKnown RBP10.5□□□□□ -0.73
LIMA1-201ENST00000341247 M0QZQ0 153 aa10.5□□□□□ -0.73
LIMA1-201ENST00000341247 SIN3BO75182 1162 aa10.5□□□□□ -0.73
LIMA1-201ENST00000341247 PDE5AO76074 875 aa10.5□□□□□ -0.73
LIMA1-201ENST00000341247 SERPINA6P08185 405 aa10.5□□□□□ -0.73
LIMA1-201ENST00000341247 FAM163BP0C2L3 166 aa10.5□□□□□ -0.73
LIMA1-201ENST00000341247 NPY2RP49146 381 aa10.5□□□□□ -0.73
LIMA1-201ENST00000341247 RAB27AP51159 221 aa10.5□□□□□ -0.73
LIMA1-201ENST00000341247 COG7P83436 770 aa10.5□□□□□ -0.73
LIMA1-201ENST00000341247 SLC9B1Q4ZJI4 515 aa10.5□□□□□ -0.73
LIMA1-201ENST00000341247 CLLU1OSQ5K130 101 aa10.5□□□□□ -0.73
LIMA1-201ENST00000341247 SPDYAQ5MJ70 313 aa10.5□□□□□ -0.73
LIMA1-201ENST00000341247 WASHC2DQ5SRD0 308 aa10.5□□□□□ -0.73
LIMA1-201ENST00000341247 TLDC1Q6P9B6 456 aa10.5□□□□□ -0.73
LIMA1-201ENST00000341247 MAPK15Q8TD08 544 aa10.5□□□□□ -0.73
LIMA1-201ENST00000341247 IRGQQ8WZA9 623 aa10.5□□□□□ -0.73
LIMA1-201ENST00000341247 FAM136AQ96C01 138 aa10.5□□□□□ -0.73
LIMA1-201ENST00000341247 FAM193BQ96PV7 902 aaPredicted RBP10.5□□□□□ -0.73
LIMA1-201ENST00000341247 GATA5Q9BWX5 397 aaPredicted RBP10.5□□□□□ -0.73
LIMA1-201ENST00000341247 NEU3Q9UQ49 428 aa10.5□□□□□ -0.73
LIMA1-201ENST00000341247 NLRC5Q86WI3 1866 aa10.5□□□□□ -0.73
LIMA1-201ENST00000341247 TMEM88BA6NKF7 163 aa10.5□□□□□ -0.73
LIMA1-201ENST00000341247 TADA2AO75478 443 aa10.5□□□□□ -0.73
LIMA1-201ENST00000341247 BAG2O95816 211 aa10.5□□□□□ -0.73
LIMA1-201ENST00000341247 IL1BP01584 269 aa10.5□□□□□ -0.73
LIMA1-201ENST00000341247 NAGLUP54802 743 aa10.5□□□□□ -0.73
LIMA1-201ENST00000341247 ALFQ53S48 1182 aa10.5□□□□□ -0.73
LIMA1-201ENST00000341247 PIK3R6Q5UE93 754 aa10.5□□□□□ -0.73
LIMA1-201ENST00000341247 ZNF470Q6ECI4 717 aa10.5□□□□□ -0.73
LIMA1-201ENST00000341247 CCSAPQ6IQ19 270 aaPredicted RBP10.5□□□□□ -0.73
LIMA1-201ENST00000341247 TTC16Q8NEE8 873 aa10.5□□□□□ -0.73
LIMA1-201ENST00000341247 MARK4Q96L34 752 aa10.5□□□□□ -0.73
LIMA1-201ENST00000341247 TTC1Q99614 292 aa10.5□□□□□ -0.73
LIMA1-201ENST00000341247 SEPT5Q99719 369 aaPredicted RBP10.5□□□□□ -0.73
LIMA1-201ENST00000341247 CATSPERBQ9H7T0 1116 aa10.5□□□□□ -0.73
LIMA1-201ENST00000341247 COG4Q9H9E3 785 aa10.5□□□□□ -0.73
LIMA1-201ENST00000341247 DSEQ9UL01 958 aa10.5□□□□□ -0.73
LIMA1-201ENST00000341247 G3V2L1 256 aa10.49□□□□□ -0.73
LIMA1-201ENST00000341247 TNFRSF10BO14763 440 aa10.49□□□□□ -0.73
LIMA1-201ENST00000341247 CA12O43570 354 aa10.49□□□□□ -0.73
LIMA1-201ENST00000341247 HNRNPCL1O60812 293 aaKnown RBP10.49□□□□□ -0.73
LIMA1-201ENST00000341247 WFS1O76024 890 aa10.49□□□□□ -0.73
LIMA1-201ENST00000341247 CYP11A1P05108 521 aa10.49□□□□□ -0.73
LIMA1-201ENST00000341247 GNAZP19086 355 aa10.49□□□□□ -0.73
LIMA1-201ENST00000341247 MBTPS1Q14703 1052 aa10.49□□□□□ -0.73
LIMA1-201ENST00000341247 MUM1Q2TAK8 710 aa10.49□□□□□ -0.73
LIMA1-201ENST00000341247 PDPK2PQ6A1A2 396 aa10.49□□□□□ -0.73
LIMA1-201ENST00000341247 RPS27LQ71UM5 84 aaKnown RBP10.49□□□□□ -0.73
LIMA1-201ENST00000341247 ZC3HC1Q86WB0 502 aaKnown RBP10.49□□□□□ -0.73
LIMA1-201ENST00000341247 CEP97Q8IW35 865 aa10.49□□□□□ -0.73
LIMA1-201ENST00000341247 SCUBE1Q8IWY4 988 aa10.49□□□□□ -0.73
LIMA1-201ENST00000341247 ELMO2Q96JJ3 720 aa10.49□□□□□ -0.73
LIMA1-201ENST00000341247 TSNARE1Q96NA8 513 aa10.49□□□□□ -0.73
LIMA1-201ENST00000341247 VAT1Q99536 393 aa10.49□□□□□ -0.73
LIMA1-201ENST00000341247 ACE2Q9BYF1 805 aaPredicted RBP10.49□□□□□ -0.73
LIMA1-201ENST00000341247 OSBPL2Q9H1P3 480 aa10.49□□□□□ -0.73
LIMA1-201ENST00000341247 ARHGEF38Q9NXL2 777 aa10.49□□□□□ -0.73
LIMA1-201ENST00000341247 TDRD15B5MCY1 1934 aaKnown RBP10.49□□□□□ -0.73
LIMA1-201ENST00000341247 PDE4DIPQ5VU43 2346 aa10.49□□□□□ -0.73
LIMA1-201ENST00000341247 ERI2A8K979 691 aaKnown RBP10.49□□□□□ -0.73
LIMA1-201ENST00000341247 TBX10O75333 385 aa10.49□□□□□ -0.73
LIMA1-201ENST00000341247 HAPLN1P10915 354 aaPredicted RBP10.49□□□□□ -0.73
LIMA1-201ENST00000341247 NAB1Q13506 487 aa10.49□□□□□ -0.73
LIMA1-201ENST00000341247 TUBB3Q13509 450 aa10.49□□□□□ -0.73
LIMA1-201ENST00000341247 ZNF789Q5FWF6 425 aa10.49□□□□□ -0.73
LIMA1-201ENST00000341247 FAM171A1Q5VUB5 890 aa10.49□□□□□ -0.73
LIMA1-201ENST00000341247 C1orf146Q5VVC0 180 aa10.49□□□□□ -0.73
LIMA1-201ENST00000341247 RAP1GAP2Q684P5 730 aa10.49□□□□□ -0.73
LIMA1-201ENST00000341247 NXNQ6DKJ4 435 aa10.49□□□□□ -0.73
LIMA1-201ENST00000341247 PKN3Q6P5Z2 889 aa10.49□□□□□ -0.73
LIMA1-201ENST00000341247 TMPRSS6Q8IU80 811 aa10.49□□□□□ -0.73
LIMA1-201ENST00000341247 MFSD6LQ8IWD5 586 aa10.49□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms