RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 PROX1Q92786 737 aa11.66□□□□□ -0.54
VPS39-201ENST00000318006 FICDQ9BVA6 458 aa11.66□□□□□ -0.54
VPS39-201ENST00000318006 UBXN6Q9BZV1 441 aa11.66□□□□□ -0.54
VPS39-201ENST00000318006 UNKQ9C0B0 810 aaKnown RBP11.66□□□□□ -0.54
VPS39-201ENST00000318006 XPNPEP3Q9NQH7 507 aa11.66□□□□□ -0.54
VPS39-201ENST00000318006 C3orf18Q9UK00 162 aa11.66□□□□□ -0.54
VPS39-201ENST00000318006 EME2A4GXA9 379 aaPredicted RBP11.66□□□□□ -0.54
VPS39-201ENST00000318006 C2orf81A6NN90 581 aa11.66□□□□□ -0.54
VPS39-201ENST00000318006 FAM220BPB1ANY3 271 aa11.66□□□□□ -0.54
VPS39-201ENST00000318006 CHADO15335 359 aa11.66□□□□□ -0.54
VPS39-201ENST00000318006 PPP1R11O60927 126 aaPredicted RBP11.66□□□□□ -0.54
VPS39-201ENST00000318006 CPSF4O95639 269 aaKnown RBP11.66□□□□□ -0.54
VPS39-201ENST00000318006 SNRPB2P08579 225 aaKnown RBP11.66□□□□□ -0.54
VPS39-201ENST00000318006 NPY2RP49146 381 aa11.66□□□□□ -0.54
VPS39-201ENST00000318006 LSM3P62310 102 aaKnown RBP11.66□□□□□ -0.54
VPS39-201ENST00000318006 ALDH6A1Q02252 535 aaKnown RBP11.66□□□□□ -0.54
VPS39-201ENST00000318006 ILF2Q12905 390 aaKnown RBP11.66□□□□□ -0.54
VPS39-201ENST00000318006 DDX53Q86TM3 631 aaKnown RBP11.66□□□□□ -0.54
VPS39-201ENST00000318006 FAM47BQ8NA70 645 aa11.66□□□□□ -0.54
VPS39-201ENST00000318006 FNDC5Q8NAU1 212 aa11.66□□□□□ -0.54
VPS39-201ENST00000318006 HTR3CQ8WXA8 447 aa11.66□□□□□ -0.54
VPS39-201ENST00000318006 OSBPL10Q9BXB5 764 aa11.66□□□□□ -0.54
VPS39-201ENST00000318006 ACP6Q9NPH0 428 aa11.66□□□□□ -0.54
VPS39-201ENST00000318006 AP3M1Q9Y2T2 418 aa11.66□□□□□ -0.54
VPS39-201ENST00000318006 PRR5-ARHGAP8B1AHC4 643 aa11.66□□□□□ -0.54
VPS39-201ENST00000318006 TK2O00142 265 aa11.66□□□□□ -0.54
VPS39-201ENST00000318006 IRF6O14896 467 aa11.66□□□□□ -0.54
VPS39-201ENST00000318006 LIASO43766 372 aa11.66□□□□□ -0.54
VPS39-201ENST00000318006 RAB27AP51159 221 aa11.66□□□□□ -0.54
VPS39-201ENST00000318006 ARHGAP8P85298 464 aa11.66□□□□□ -0.54
VPS39-201ENST00000318006 ADIGQ0VDE8 80 aa11.66□□□□□ -0.54
VPS39-201ENST00000318006 SQLEQ14534 574 aa11.66□□□□□ -0.54
VPS39-201ENST00000318006 QPRTQ15274 297 aa11.66□□□□□ -0.54
VPS39-201ENST00000318006 ZIK1Q3SY52 487 aaPredicted RBP11.66□□□□□ -0.54
VPS39-201ENST00000318006 ARSHQ5FYA8 562 aa11.66□□□□□ -0.54
VPS39-201ENST00000318006 USP50Q70EL3 339 aaPredicted RBP11.66□□□□□ -0.54
VPS39-201ENST00000318006 AMIGO2Q86SJ2 522 aa11.66□□□□□ -0.54
VPS39-201ENST00000318006 EFCAB3Q8N7B9 438 aa11.66□□□□□ -0.54
VPS39-201ENST00000318006 LNX1Q8TBB1 728 aaPredicted RBP11.66□□□□□ -0.54
VPS39-201ENST00000318006 SPPL2AQ8TCT8 520 aa11.66□□□□□ -0.54
VPS39-201ENST00000318006 ACMSDQ8TDX5 336 aa11.66□□□□□ -0.54
VPS39-201ENST00000318006 SHC3Q92529 594 aa11.66□□□□□ -0.54
VPS39-201ENST00000318006 TSEN34Q9BSV6 310 aaKnown RBP11.66□□□□□ -0.54
VPS39-201ENST00000318006 MRPL39Q9NYK5 338 aaKnown RBP11.66□□□□□ -0.54
VPS39-201ENST00000318006 TIMM13Q9Y5L4 95 aaPredicted RBP11.66□□□□□ -0.54
VPS39-201ENST00000318006 MYPNQ86TC9 1320 aa11.65□□□□□ -0.54
VPS39-201ENST00000318006 A0A0B4J269 797 aa11.65□□□□□ -0.54
VPS39-201ENST00000318006 ERI2A8K979 691 aaKnown RBP11.65□□□□□ -0.54
VPS39-201ENST00000318006 TMEM114B3SHH9 223 aa11.65□□□□□ -0.54
VPS39-201ENST00000318006 MYL12BO14950 172 aa11.65□□□□□ -0.54
VPS39-201ENST00000318006 TGFB1I1O43294 461 aa11.65□□□□□ -0.54
VPS39-201ENST00000318006 SLC2A4P14672 509 aa11.65□□□□□ -0.54
VPS39-201ENST00000318006 MIPP30301 263 aa11.65□□□□□ -0.54
VPS39-201ENST00000318006 GSSP48637 474 aa11.65□□□□□ -0.54
VPS39-201ENST00000318006 RAB15P59190 212 aa11.65□□□□□ -0.54
VPS39-201ENST00000318006 CDH18Q13634 790 aa11.65□□□□□ -0.54
VPS39-201ENST00000318006 TMEM132BQ14DG7 1078 aa11.65□□□□□ -0.54
VPS39-201ENST00000318006 CASP12Q6UXS9 341 aa11.65□□□□□ -0.54
VPS39-201ENST00000318006 IRF2BP1Q8IU81 584 aa11.65□□□□□ -0.54
VPS39-201ENST00000318006 SCUBE3Q8IX30 993 aa11.65□□□□□ -0.54
VPS39-201ENST00000318006 NARS2Q96I59 477 aaKnown RBP11.65□□□□□ -0.54
VPS39-201ENST00000318006 TMEM106CQ9BVX2 250 aa11.65□□□□□ -0.54
VPS39-201ENST00000318006 ARHGEF3Q9NR81 526 aa11.65□□□□□ -0.54
VPS39-201ENST00000318006 VAV3Q9UKW4 847 aa11.65□□□□□ -0.54
VPS39-201ENST00000318006 MTF2Q9Y483 593 aaPredicted RBP11.65□□□□□ -0.54
VPS39-201ENST00000318006 MANSC4A6NHS7 340 aaPredicted RBP11.65□□□□□ -0.54
VPS39-201ENST00000318006 GJB6O95452 261 aa11.65□□□□□ -0.54
VPS39-201ENST00000318006 NADKO95544 446 aaPredicted RBP11.65□□□□□ -0.54
VPS39-201ENST00000318006 CYP1A2P05177 515 aa11.65□□□□□ -0.54
VPS39-201ENST00000318006 SERPIND1P05546 499 aa11.65□□□□□ -0.54
VPS39-201ENST00000318006 DBTP11182 482 aaKnown RBP11.65□□□□□ -0.54
VPS39-201ENST00000318006 AKR1A1P14550 325 aa11.65□□□□□ -0.54
VPS39-201ENST00000318006 NR2C2P49116 596 aa11.65□□□□□ -0.54
VPS39-201ENST00000318006 EFEMP1Q12805 493 aa11.65□□□□□ -0.54
VPS39-201ENST00000318006 DDX39BQ13838 428 aaKnown RBP11.65□□□□□ -0.54
VPS39-201ENST00000318006 HIST2H2ACQ16777 129 aaPredicted RBP11.65□□□□□ -0.54
VPS39-201ENST00000318006 HIST2H2AA3Q6FI13 130 aa11.65□□□□□ -0.54
VPS39-201ENST00000318006 OVOS1Q6IE37 1185 aa11.65□□□□□ -0.54
VPS39-201ENST00000318006 NECAB2Q7Z6G3 386 aa11.65□□□□□ -0.54
VPS39-201ENST00000318006 EGFL6Q8IUX8 553 aa11.65□□□□□ -0.54
VPS39-201ENST00000318006 TCAIMQ8N3R3 496 aa11.65□□□□□ -0.54
VPS39-201ENST00000318006 ALLCQ8N6M5 410 aa11.65□□□□□ -0.54
VPS39-201ENST00000318006 ARRDC4Q8NCT1 418 aa11.65□□□□□ -0.54
VPS39-201ENST00000318006 TEKT5Q96M29 485 aa11.65□□□□□ -0.54
VPS39-201ENST00000318006 BTBD9Q96Q07 612 aa11.65□□□□□ -0.54
VPS39-201ENST00000318006 GIN1Q9NXP7 522 aa11.65□□□□□ -0.54
VPS39-201ENST00000318006 F8VP50 259 aa11.65□□□□□ -0.54
VPS39-201ENST00000318006 HDAC3O15379 428 aa11.65□□□□□ -0.54
VPS39-201ENST00000318006 SYNCRIPO60506 623 aaKnown RBP11.65□□□□□ -0.54
VPS39-201ENST00000318006 MAFO75444 373 aaPredicted RBP11.65□□□□□ -0.54
VPS39-201ENST00000318006 RECQL5O94762 991 aaPredicted RBP11.65□□□□□ -0.54
VPS39-201ENST00000318006 ZNF12P17014 697 aa11.65□□□□□ -0.54
VPS39-201ENST00000318006 SLC26A3P40879 764 aa11.65□□□□□ -0.54
VPS39-201ENST00000318006 PSEN2P49810 448 aa11.65□□□□□ -0.54
VPS39-201ENST00000318006 SLC6A3Q01959 620 aa11.65□□□□□ -0.54
VPS39-201ENST00000318006 BNIP2Q12982 314 aa11.65□□□□□ -0.54
VPS39-201ENST00000318006 INO80DQ53TQ3 878 aaPredicted RBP11.65□□□□□ -0.54
VPS39-201ENST00000318006 ANKS6Q68DC2 871 aa11.65□□□□□ -0.54
VPS39-201ENST00000318006 ZNF280DQ6N043 979 aa11.65□□□□□ -0.54
VPS39-201ENST00000318006 YAF2Q8IY57 180 aa11.65□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms