RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 GRB10Q13322 594 aa14.03□□□□□ -0.16
CSPG4-201ENST00000308508 FNBP1LQ5T0N5 605 aa14.03□□□□□ -0.16
CSPG4-201ENST00000308508 MOXD1Q6UVY6 613 aa14.03□□□□□ -0.16
CSPG4-201ENST00000308508 CHST13Q8NET6 341 aa14.03□□□□□ -0.16
CSPG4-201ENST00000308508 GNPTGQ9UJJ9 305 aa14.03□□□□□ -0.16
CSPG4-201ENST00000308508 TSPOAP1O95153 1857 aa14.03□□□□□ -0.16
CSPG4-201ENST00000308508 B3GAT3O94766 335 aa14.03□□□□□ -0.16
CSPG4-201ENST00000308508 LRIG2O94898 1065 aa14.03□□□□□ -0.16
CSPG4-201ENST00000308508 THRBP10828 461 aa14.03□□□□□ -0.16
CSPG4-201ENST00000308508 CDK9P50750 372 aaKnown RBP14.03□□□□□ -0.16
CSPG4-201ENST00000308508 CCR4P51679 360 aa14.03□□□□□ -0.16
CSPG4-201ENST00000308508 EFEMP1Q12805 493 aa14.03□□□□□ -0.16
CSPG4-201ENST00000308508 MAPKAPK3Q16644 382 aa14.03□□□□□ -0.16
CSPG4-201ENST00000308508 ETNPPLQ8TBG4 499 aa14.03□□□□□ -0.16
CSPG4-201ENST00000308508 SEMA6BQ9H3T3 888 aa14.03□□□□□ -0.16
CSPG4-201ENST00000308508 OGDHLQ9ULD0 1010 aa14.03□□□□□ -0.16
CSPG4-201ENST00000308508 ST3GAL5Q9UNP4 418 aa14.03□□□□□ -0.16
CSPG4-201ENST00000308508 INO80Q9ULG1 1556 aaPredicted RBP14.03□□□□□ -0.16
CSPG4-201ENST00000308508 ERN1O75460 977 aaKnown RBP14.03□□□□□ -0.16
CSPG4-201ENST00000308508 PSME3P61289 254 aa14.03□□□□□ -0.16
CSPG4-201ENST00000308508 BTN3A2P78410 334 aa14.03□□□□□ -0.16
CSPG4-201ENST00000308508 PDPRQ8NCN5 879 aa14.03□□□□□ -0.16
CSPG4-201ENST00000308508 TEX47Q8TBZ9 253 aa14.03□□□□□ -0.16
CSPG4-201ENST00000308508 MRPS31Q92665 395 aaKnown RBP14.03□□□□□ -0.16
CSPG4-201ENST00000308508 TDRD1Q9BXT4 1180 aaKnown RBP14.03□□□□□ -0.16
CSPG4-201ENST00000308508 PCDHA11Q9Y5I1 949 aa14.03□□□□□ -0.16
CSPG4-201ENST00000308508 AP4B1Q9Y6B7 739 aa14.03□□□□□ -0.16
CSPG4-201ENST00000308508 MSH4O15457 936 aa14.03□□□□□ -0.16
CSPG4-201ENST00000308508 NADKO95544 446 aaPredicted RBP14.03□□□□□ -0.16
CSPG4-201ENST00000308508 PTPN11Q06124 597 aaPredicted RBP14.03□□□□□ -0.16
CSPG4-201ENST00000308508 SPESP1Q6UW49 350 aa14.03□□□□□ -0.16
CSPG4-201ENST00000308508 HPS6Q86YV9 775 aa14.03□□□□□ -0.16
CSPG4-201ENST00000308508 LZTR1Q8N653 840 aa14.03□□□□□ -0.16
CSPG4-201ENST00000308508 UBE2E3Q969T4 207 aa14.03□□□□□ -0.16
CSPG4-201ENST00000308508 ISCA1Q9BUE6 129 aa14.03□□□□□ -0.16
CSPG4-201ENST00000308508 MOV10Q9HCE1 1003 aaKnown RBP14.03□□□□□ -0.16
CSPG4-201ENST00000308508 CRYL1Q9Y2S2 319 aa14.03□□□□□ -0.16
CSPG4-201ENST00000308508 VAPBO95292 243 aa14.03□□□□□ -0.16
CSPG4-201ENST00000308508 FGFR1P11362 822 aa14.03□□□□□ -0.16
CSPG4-201ENST00000308508 SDC2P34741 201 aa14.03□□□□□ -0.16
CSPG4-201ENST00000308508 KCNJ2P63252 427 aa14.03□□□□□ -0.16
CSPG4-201ENST00000308508 SLC25A3Q00325 362 aa14.03□□□□□ -0.16
CSPG4-201ENST00000308508 R3HCC1LQ7Z5L2 792 aaKnown RBP14.03□□□□□ -0.16
CSPG4-201ENST00000308508 KBTBD7Q8WVZ9 684 aa14.03□□□□□ -0.16
CSPG4-201ENST00000308508 TLR8Q9NR97 1041 aaKnown RBP14.03□□□□□ -0.16
CSPG4-201ENST00000308508 MLXQ9UH92 298 aa14.03□□□□□ -0.16
CSPG4-201ENST00000308508 ITGA11Q9UKX5 1188 aa14.03□□□□□ -0.16
CSPG4-201ENST00000308508 SNX7Q9UNH6 387 aa14.03□□□□□ -0.16
CSPG4-201ENST00000308508 CEP170Q5SW79 1584 aa14.03□□□□□ -0.16
CSPG4-201ENST00000308508 PLK4O00444 970 aa14.03□□□□□ -0.16
CSPG4-201ENST00000308508 PRKAR2AP13861 404 aaKnown RBP14.03□□□□□ -0.16
CSPG4-201ENST00000308508 ITGB6P18564 788 aa14.03□□□□□ -0.16
CSPG4-201ENST00000308508 PLK1P53350 603 aa14.03□□□□□ -0.16
CSPG4-201ENST00000308508 ARPC4P59998 168 aa14.03□□□□□ -0.16
CSPG4-201ENST00000308508 MYL6P60660 151 aa14.03□□□□□ -0.16
CSPG4-201ENST00000308508 BOP1Q14137 746 aaKnown RBP14.03□□□□□ -0.16
CSPG4-201ENST00000308508 AGMOQ6ZNB7 445 aa14.03□□□□□ -0.16
CSPG4-201ENST00000308508 FRMD6Q96NE9 622 aa14.03□□□□□ -0.16
CSPG4-201ENST00000308508 VAT1Q99536 393 aa14.03□□□□□ -0.16
CSPG4-201ENST00000308508 PLA2G12BQ9BX93 195 aa14.03□□□□□ -0.16
CSPG4-201ENST00000308508 XPNPEP3Q9NQH7 507 aa14.03□□□□□ -0.16
CSPG4-201ENST00000308508 ADAM28Q9UKQ2 775 aa14.03□□□□□ -0.16
CSPG4-201ENST00000308508 GIT1Q9Y2X7 761 aa14.03□□□□□ -0.16
CSPG4-201ENST00000308508 NOS1APO75052 506 aaPredicted RBP14.02□□□□□ -0.16
CSPG4-201ENST00000308508 BMP7P18075 431 aa14.02□□□□□ -0.16
CSPG4-201ENST00000308508 TCF7P36402 384 aaPredicted RBP14.02□□□□□ -0.16
CSPG4-201ENST00000308508 ENPEPQ07075 957 aa14.02□□□□□ -0.16
CSPG4-201ENST00000308508 SWT1Q5T5J6 900 aaKnown RBP14.02□□□□□ -0.16
CSPG4-201ENST00000308508 DAW1Q8N136 415 aa14.02□□□□□ -0.16
CSPG4-201ENST00000308508 SYTL5Q8TDW5 730 aaPredicted RBP14.02□□□□□ -0.16
CSPG4-201ENST00000308508 PSME2Q9UL46 239 aa14.02□□□□□ -0.16
CSPG4-201ENST00000308508 FAM240BA0A1B0GVZ2 78 aa14.02□□□□□ -0.16
CSPG4-201ENST00000308508 SLC37A4O43826 429 aa14.02□□□□□ -0.16
CSPG4-201ENST00000308508 NR2F6P10588 404 aa14.02□□□□□ -0.16
CSPG4-201ENST00000308508 IL18Q14116 193 aa14.02□□□□□ -0.16
CSPG4-201ENST00000308508 STAG3L4Q8TBR4 150 aa14.02□□□□□ -0.16
CSPG4-201ENST00000308508 HTRA1Q92743 480 aa14.02□□□□□ -0.16
CSPG4-201ENST00000308508 DHRS7Q9Y394 339 aa14.02□□□□□ -0.16
CSPG4-201ENST00000308508 OR14I1A6ND48 311 aa14.02□□□□□ -0.16
CSPG4-201ENST00000308508 RAMP2O60895 175 aa14.02□□□□□ -0.16
CSPG4-201ENST00000308508 ENTPD5O75356 428 aa14.02□□□□□ -0.16
CSPG4-201ENST00000308508 ATF4P18848 351 aaPredicted RBP14.02□□□□□ -0.16
CSPG4-201ENST00000308508 ALDH3A2P51648 485 aa14.02□□□□□ -0.16
CSPG4-201ENST00000308508 PDK4Q16654 411 aa14.02□□□□□ -0.16
CSPG4-201ENST00000308508 INSCQ1MX18 579 aa14.02□□□□□ -0.16
CSPG4-201ENST00000308508 HYIQ5T013 277 aa14.02□□□□□ -0.16
CSPG4-201ENST00000308508 NELL1Q92832 810 aa14.02□□□□□ -0.16
CSPG4-201ENST00000308508 SP140LQ9H930 580 aa14.02□□□□□ -0.16
CSPG4-201ENST00000308508 TDRKHQ9Y2W6 561 aaKnown RBP14.02□□□□□ -0.16
CSPG4-201ENST00000308508 SPHKAPQ2M3C7 1700 aa14.02□□□□□ -0.17
CSPG4-201ENST00000308508 UGGT1Q9NYU2 1555 aa14.02□□□□□ -0.17
CSPG4-201ENST00000308508 ZSCAN5CA6NGD5 496 aaPredicted RBP14.02□□□□□ -0.17
CSPG4-201ENST00000308508 FDPSP14324 419 aaKnown RBP14.02□□□□□ -0.17
CSPG4-201ENST00000308508 ETS2P15036 469 aa14.02□□□□□ -0.17
CSPG4-201ENST00000308508 GIT2Q14161 759 aa14.02□□□□□ -0.17
CSPG4-201ENST00000308508 KCNA10Q16322 511 aa14.02□□□□□ -0.17
CSPG4-201ENST00000308508 TTMPQ5BVD1 217 aa14.02□□□□□ -0.17
CSPG4-201ENST00000308508 GCNT7Q6ZNI0 430 aa14.02□□□□□ -0.17
CSPG4-201ENST00000308508 ATG9AQ7Z3C6 839 aa14.02□□□□□ -0.17
CSPG4-201ENST00000308508 LPCAT1Q8NF37 534 aa14.02□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms