RNA–Protein interactions for RNA: ENST00000298260.8

SKA3-201, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 2,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-201ENST00000298260 CLIP3Q96DZ5 547 aa13.69□□□□□ -0.22
SKA3-201ENST00000298260 CSF3RQ99062 836 aa13.69□□□□□ -0.22
SKA3-201ENST00000298260 ADI1Q9BV57 179 aa13.69□□□□□ -0.22
SKA3-201ENST00000298260 SEPT10Q9P0V9 454 aa13.69□□□□□ -0.22
SKA3-201ENST00000298260 AXIN1O15169 862 aa13.68□□□□□ -0.22
SKA3-201ENST00000298260 LYPLA2O95372 231 aa13.68□□□□□ -0.22
SKA3-201ENST00000298260 ATP6V1B2P21281 511 aa13.68□□□□□ -0.22
SKA3-201ENST00000298260 JAK1P23458 1154 aa13.68□□□□□ -0.22
SKA3-201ENST00000298260 ZNF460Q14592 562 aa13.68□□□□□ -0.22
SKA3-201ENST00000298260 KIZQ2M2Z5 673 aa13.68□□□□□ -0.22
SKA3-201ENST00000298260 HMGCLL1Q8TB92 370 aa13.68□□□□□ -0.22
SKA3-201ENST00000298260 EHD1Q9H4M9 534 aa13.68□□□□□ -0.22
SKA3-201ENST00000298260 GIN1Q9NXP7 522 aa13.68□□□□□ -0.22
SKA3-201ENST00000298260 CNOT11Q9UKZ1 510 aaKnown RBP13.68□□□□□ -0.22
SKA3-201ENST00000298260 UBIAD1Q9Y5Z9 338 aa13.68□□□□□ -0.22
SKA3-201ENST00000298260 V9GYQ6 96 aa13.68□□□□□ -0.22
SKA3-201ENST00000298260 K7ERI5 159 aa13.68□□□□□ -0.22
SKA3-201ENST00000298260 EEF1B2P24534 225 aaKnown RBP13.68□□□□□ -0.22
SKA3-201ENST00000298260 TSPY1Q01534 308 aa13.68□□□□□ -0.22
SKA3-201ENST00000298260 IFITM3Q01628 133 aa13.68□□□□□ -0.22
SKA3-201ENST00000298260 PIGFQ07326 219 aa13.68□□□□□ -0.22
SKA3-201ENST00000298260 TFDP2Q14188 446 aa13.68□□□□□ -0.22
SKA3-201ENST00000298260 MAPK11Q15759 364 aa13.68□□□□□ -0.22
SKA3-201ENST00000298260 SMUG1Q53HV7 270 aa13.68□□□□□ -0.22
SKA3-201ENST00000298260 C6orf10Q5SRN2 563 aa13.68□□□□□ -0.22
SKA3-201ENST00000298260 ZNF618Q5T7W0 954 aa13.68□□□□□ -0.22
SKA3-201ENST00000298260 OR6B2Q6IFH4 312 aa13.68□□□□□ -0.22
SKA3-201ENST00000298260 STRA8Q7Z7C7 330 aa13.68□□□□□ -0.22
SKA3-201ENST00000298260 PARP8Q8N3A8 854 aa13.68□□□□□ -0.22
SKA3-201ENST00000298260 NIF3L1Q9GZT8 377 aa13.68□□□□□ -0.22
SKA3-201ENST00000298260 FAM96AQ9H5X1 160 aa13.68□□□□□ -0.22
SKA3-201ENST00000298260 FANCEQ9HB96 536 aa13.68□□□□□ -0.22
SKA3-201ENST00000298260 RAVER2Q9HCJ3 691 aaKnown RBP13.68□□□□□ -0.22
SKA3-201ENST00000298260 BCAP29Q9UHQ4 241 aa13.68□□□□□ -0.22
SKA3-201ENST00000298260 M0QYV0 167 aa13.68□□□□□ -0.22
SKA3-201ENST00000298260 PAPSS1O43252 624 aaPredicted RBP13.68□□□□□ -0.22
SKA3-201ENST00000298260 BAIAP3O94812 1187 aa13.68□□□□□ -0.22
SKA3-201ENST00000298260 HNRNPLP14866 589 aaKnown RBP eCLIP13.68□□□□□ -0.22
SKA3-201ENST00000298260 CYP3A5P20815 502 aa13.68□□□□□ -0.22
SKA3-201ENST00000298260 DCKP27707 260 aa13.68□□□□□ -0.22
SKA3-201ENST00000298260 ELK4P28324 431 aa13.68□□□□□ -0.22
SKA3-201ENST00000298260 POLR2BP30876 1174 aaKnown RBP13.68□□□□□ -0.22
SKA3-201ENST00000298260 PHKG1Q16816 387 aa13.68□□□□□ -0.22
SKA3-201ENST00000298260 DEPDC1Q5TB30 811 aa13.68□□□□□ -0.22
SKA3-201ENST00000298260 VASH1Q7L8A9 365 aaPredicted RBP13.68□□□□□ -0.22
SKA3-201ENST00000298260 CCDC60Q8IWA6 550 aaPredicted RBP13.68□□□□□ -0.22
SKA3-201ENST00000298260 APBB2Q92870 758 aa13.68□□□□□ -0.22
SKA3-201ENST00000298260 CNDP1Q96KN2 507 aa13.68□□□□□ -0.22
SKA3-201ENST00000298260 NMRAL1Q9HBL8 299 aa13.68□□□□□ -0.22
SKA3-201ENST00000298260 FAM49BQ9NUQ9 324 aa13.68□□□□□ -0.22
SKA3-201ENST00000298260 KLQ9UEF7 1012 aa13.68□□□□□ -0.22
SKA3-201ENST00000298260 PCDHGC3Q9UN70 934 aa13.68□□□□□ -0.22
SKA3-201ENST00000298260 CPQQ9Y646 472 aa13.68□□□□□ -0.22
SKA3-201ENST00000298260 TCP10L2B9ZVM9 353 aa13.67□□□□□ -0.22
SKA3-201ENST00000298260 C2P06681 752 aa13.67□□□□□ -0.22
SKA3-201ENST00000298260 ASPAP45381 313 aa13.67□□□□□ -0.22
SKA3-201ENST00000298260 RPS3AP61247 264 aaKnown RBP13.67□□□□□ -0.22
SKA3-201ENST00000298260 YWHAEP62258 255 aaKnown RBP13.67□□□□□ -0.22
SKA3-201ENST00000298260 KCNC4Q03721 635 aa13.67□□□□□ -0.22
SKA3-201ENST00000298260 FAM47CQ5HY64 1035 aa13.67□□□□□ -0.22
SKA3-201ENST00000298260 HHIPL2Q6UWX4 724 aa13.67□□□□□ -0.22
SKA3-201ENST00000298260 SPPL2CQ8IUH8 684 aa13.67□□□□□ -0.22
SKA3-201ENST00000298260 PCYOX1LQ8NBM8 494 aa13.67□□□□□ -0.22
SKA3-201ENST00000298260 ACMSDQ8TDX5 336 aa13.67□□□□□ -0.22
SKA3-201ENST00000298260 CDKL2Q92772 493 aa13.67□□□□□ -0.22
SKA3-201ENST00000298260 NSMCE3Q96MG7 304 aa13.67□□□□□ -0.22
SKA3-201ENST00000298260 TASP1Q9H6P5 420 aa13.67□□□□□ -0.22
SKA3-201ENST00000298260 NANOGQ9H9S0 305 aa13.67□□□□□ -0.22
SKA3-201ENST00000298260 LTB4R2Q9NPC1 389 aa13.67□□□□□ -0.22
SKA3-201ENST00000298260 VPS28Q9UK41 221 aa13.67□□□□□ -0.22
SKA3-201ENST00000298260 OAZ3Q9UMX2 235 aa13.67□□□□□ -0.22
SKA3-201ENST00000298260 CDYLQ9Y232 598 aa13.67□□□□□ -0.22
SKA3-201ENST00000298260 CLOCKO15516 846 aa13.67□□□□□ -0.22
SKA3-201ENST00000298260 MAN1A2O60476 641 aa13.67□□□□□ -0.22
SKA3-201ENST00000298260 C8BP07358 591 aa13.67□□□□□ -0.22
SKA3-201ENST00000298260 CYP2C9P11712 490 aa13.67□□□□□ -0.22
SKA3-201ENST00000298260 TPTEP56180 551 aa13.67□□□□□ -0.22
SKA3-201ENST00000298260 FPGSQ05932 587 aa13.67□□□□□ -0.22
SKA3-201ENST00000298260 MERTKQ12866 999 aa13.67□□□□□ -0.22
SKA3-201ENST00000298260 TRPC3Q13507 836 aa13.67□□□□□ -0.22
SKA3-201ENST00000298260 ZNF699Q32M78 642 aa13.67□□□□□ -0.22
SKA3-201ENST00000298260 ZIK1Q3SY52 487 aaPredicted RBP13.67□□□□□ -0.22
SKA3-201ENST00000298260 AGKQ53H12 422 aa13.67□□□□□ -0.22
SKA3-201ENST00000298260 STXBP5Q5T5C0 1151 aa13.67□□□□□ -0.22
SKA3-201ENST00000298260 TP53INP2Q8IXH6 220 aa13.67□□□□□ -0.22
SKA3-201ENST00000298260 MCUQ8NE86 351 aa13.67□□□□□ -0.22
SKA3-201ENST00000298260 LRRC39Q96DD0 335 aa13.67□□□□□ -0.22
SKA3-201ENST00000298260 SCYL1Q96KG9 808 aa13.67□□□□□ -0.22
SKA3-201ENST00000298260 ALPK1Q96QP1 1244 aa13.67□□□□□ -0.22
SKA3-201ENST00000298260 APOL2Q9BQE5 337 aa13.67□□□□□ -0.22
SKA3-201ENST00000298260 SNRNP25Q9BV90 132 aaKnown RBP13.67□□□□□ -0.22
SKA3-201ENST00000298260 EIF2AQ9BY44 585 aaKnown RBP13.67□□□□□ -0.22
SKA3-201ENST00000298260 COA1Q9GZY4 146 aa13.67□□□□□ -0.22
SKA3-201ENST00000298260 ZNF385DQ9H6B1 395 aa13.67□□□□□ -0.22
SKA3-201ENST00000298260 XPO5Q9HAV4 1204 aaKnown RBP eCLIP13.67□□□□□ -0.22
SKA3-201ENST00000298260 ANKEF1Q9NU02 776 aa13.67□□□□□ -0.22
SKA3-201ENST00000298260 RIC8BQ9NVN3 520 aa13.67□□□□□ -0.22
SKA3-201ENST00000298260 SLC39A10Q9ULF5 831 aa13.67□□□□□ -0.22
SKA3-201ENST00000298260 TRIP11Q15643 1979 aa13.66□□□□□ -0.22
SKA3-201ENST00000298260 ATP6AP2A0A1C7CYW4 349 aa13.66□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms