RNA–Protein interactions for RNA: ENST00000278385.10

CD44-202, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 697 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-202ENST00000278385 RIC1Q4ADV7 1423 aa4.78□□□□□ -1.64
CD44-202ENST00000278385 SIPA1L3O60292 1781 aaPredicted RBP4.78□□□□□ -1.64
CD44-202ENST00000278385 CHD4Q14839 1912 aa4.78□□□□□ -1.64
CD44-202ENST00000278385 NRXN2Q9P2S2 1712 aa4.77□□□□□ -1.65
CD44-202ENST00000278385 GIMAP1-GIMAP5A0A087WTJ2 511 aa4.77□□□□□ -1.65
CD44-202ENST00000278385 A0A087WZ62 844 aa4.77□□□□□ -1.65
CD44-202ENST00000278385 CYP2D7A0A087X1C5 515 aa4.77□□□□□ -1.65
CD44-202ENST00000278385 A0A0G2JPF8 293 aa4.77□□□□□ -1.65
CD44-202ENST00000278385 A0A1W2PRX2 142 aa4.77□□□□□ -1.65
CD44-202ENST00000278385 HNRNPCL3B7ZW38 293 aa4.77□□□□□ -1.65
CD44-202ENST00000278385 E7EVH7 732 aa4.77□□□□□ -1.65
CD44-202ENST00000278385 SCAMP1O15126 338 aa4.77□□□□□ -1.65
CD44-202ENST00000278385 HNRNPRO43390 633 aaKnown RBP4.77□□□□□ -1.65
CD44-202ENST00000278385 PEX11AO75192 247 aa4.77□□□□□ -1.65
CD44-202ENST00000278385 BCAS2O75934 225 aaPredicted RBP4.77□□□□□ -1.65
CD44-202ENST00000278385 KRT38O76015 456 aa4.77□□□□□ -1.65
CD44-202ENST00000278385 DDNO94850 711 aaPredicted RBP4.77□□□□□ -1.65
CD44-202ENST00000278385 ADCY5O95622 1261 aa4.77□□□□□ -1.65
CD44-202ENST00000278385 FTCDO95954 541 aa4.77□□□□□ -1.65
CD44-202ENST00000278385 TPOP07202 933 aa4.77□□□□□ -1.65
CD44-202ENST00000278385 GJB1P08034 283 aa4.77□□□□□ -1.65
CD44-202ENST00000278385 HNRNPCL4P0DMR1 293 aa4.77□□□□□ -1.65
CD44-202ENST00000278385 NEFHP12036 1026 aa4.77□□□□□ -1.65
CD44-202ENST00000278385 SKILP12757 684 aa4.77□□□□□ -1.65
CD44-202ENST00000278385 IL1R1P14778 569 aa4.77□□□□□ -1.65
CD44-202ENST00000278385 ARF4P18085 180 aaPredicted RBP4.77□□□□□ -1.65
CD44-202ENST00000278385 EGR1P18146 543 aa4.77□□□□□ -1.65
CD44-202ENST00000278385 CCNA2P20248 432 aa4.77□□□□□ -1.65
CD44-202ENST00000278385 CD9P21926 228 aa4.77□□□□□ -1.65
CD44-202ENST00000278385 ADSSP30520 456 aa4.77□□□□□ -1.65
CD44-202ENST00000278385 CAPZA2P47755 286 aa4.77□□□□□ -1.65
CD44-202ENST00000278385 CPA2P48052 419 aa4.77□□□□□ -1.65
CD44-202ENST00000278385 GPR15P49685 360 aa4.77□□□□□ -1.65
CD44-202ENST00000278385 NT5C2P49902 561 aa4.77□□□□□ -1.65
CD44-202ENST00000278385 BCAT1P54687 386 aa4.77□□□□□ -1.65
CD44-202ENST00000278385 KCNJ10P78508 379 aa4.77□□□□□ -1.65
CD44-202ENST00000278385 MRPS5P82675 430 aaKnown RBP4.77□□□□□ -1.65
CD44-202ENST00000278385 COG7P83436 770 aa4.77□□□□□ -1.65
CD44-202ENST00000278385 BEX3Q00994 111 aa4.77□□□□□ -1.65
CD44-202ENST00000278385 PPP3CAQ08209 521 aa4.77□□□□□ -1.65
CD44-202ENST00000278385 CCDC15Q0P6D6 951 aa4.77□□□□□ -1.65
CD44-202ENST00000278385 MGAT2Q10469 447 aa4.77□□□□□ -1.65
CD44-202ENST00000278385 MYO1EQ12965 1108 aa4.77□□□□□ -1.65
CD44-202ENST00000278385 GRAPQ13588 217 aa4.77□□□□□ -1.65
CD44-202ENST00000278385 SUPT20HL1Q3ZLR7 823 aa4.77□□□□□ -1.65
CD44-202ENST00000278385 KHDC1Q4VXA5 237 aaKnown RBP4.77□□□□□ -1.65
CD44-202ENST00000278385 CCDC178Q5BJE1 867 aa4.77□□□□□ -1.65
CD44-202ENST00000278385 ZNF628Q5EBL2 1059 aa4.77□□□□□ -1.65
CD44-202ENST00000278385 GLRA4Q5JXX5 417 aa4.77□□□□□ -1.65
CD44-202ENST00000278385 TMTC4Q5T4D3 741 aa4.77□□□□□ -1.65
CD44-202ENST00000278385 KRT80Q6KB66 452 aa4.77□□□□□ -1.65
CD44-202ENST00000278385 KIAA0408Q6ZU52 694 aa4.77□□□□□ -1.65
CD44-202ENST00000278385 PLPPR4Q7Z2D5 763 aa4.77□□□□□ -1.65
CD44-202ENST00000278385 UBE3BQ7Z3V4 1068 aa4.77□□□□□ -1.65
CD44-202ENST00000278385 LIMS2Q7Z4I7 341 aa4.77□□□□□ -1.65
CD44-202ENST00000278385 FAM217AQ8IXS0 508 aa4.77□□□□□ -1.65
CD44-202ENST00000278385 PEX5LQ8IYB4 626 aa4.77□□□□□ -1.65
CD44-202ENST00000278385 CCDC105Q8IYK2 499 aa4.77□□□□□ -1.65
CD44-202ENST00000278385 MRPL43Q8N983 215 aaKnown RBP4.77□□□□□ -1.65
CD44-202ENST00000278385 ZBTB8BQ8NAP8 495 aaPredicted RBP4.77□□□□□ -1.65
CD44-202ENST00000278385 CNNM3Q8NE01 707 aa4.77□□□□□ -1.65
CD44-202ENST00000278385 OR6J1Q8NGC5 347 aa4.77□□□□□ -1.65
CD44-202ENST00000278385 OR6B3Q8NGW1 331 aa4.77□□□□□ -1.65
CD44-202ENST00000278385 OR14C36Q8NHC7 312 aa4.77□□□□□ -1.65
CD44-202ENST00000278385 GRAPLQ8TC17 118 aaPredicted RBP4.77□□□□□ -1.65
CD44-202ENST00000278385 TEKT1Q969V4 418 aa4.77□□□□□ -1.65
CD44-202ENST00000278385 CYFIP2Q96F07 1278 aa4.77□□□□□ -1.65
CD44-202ENST00000278385 GIMAP5Q96F15 307 aa4.77□□□□□ -1.65
CD44-202ENST00000278385 FAM89AQ96GI7 184 aa4.77□□□□□ -1.65
CD44-202ENST00000278385 CLPTM1LQ96KA5 538 aa4.77□□□□□ -1.65
CD44-202ENST00000278385 FER1L6-AS2Q96M78 137 aa4.77□□□□□ -1.65
CD44-202ENST00000278385 GPR20Q99678 358 aa4.77□□□□□ -1.65
CD44-202ENST00000278385 FDXACB1Q9BRP7 624 aaPredicted RBP4.77□□□□□ -1.65
CD44-202ENST00000278385 MAK16Q9BXY0 300 aaKnown RBP4.77□□□□□ -1.65
CD44-202ENST00000278385 ACPTQ9BZG2 426 aa4.77□□□□□ -1.65
CD44-202ENST00000278385 CHST8Q9H2A9 424 aa4.77□□□□□ -1.65
CD44-202ENST00000278385 SLC6A15Q9H2J7 730 aa4.77□□□□□ -1.65
CD44-202ENST00000278385 SMARCAD1Q9H4L7 1026 aa4.77□□□□□ -1.65
CD44-202ENST00000278385 GREM2Q9H772 168 aa4.77□□□□□ -1.65
CD44-202ENST00000278385 TM9SF3Q9HD45 589 aa4.77□□□□□ -1.65
CD44-202ENST00000278385 DDX4Q9NQI0 724 aaKnown RBP4.77□□□□□ -1.65
CD44-202ENST00000278385 SERINC1Q9NRX5 453 aa4.77□□□□□ -1.65
CD44-202ENST00000278385 TBC1D23Q9NUY8 699 aa4.77□□□□□ -1.65
CD44-202ENST00000278385 DDX18Q9NVP1 670 aaKnown RBP4.77□□□□□ -1.65
CD44-202ENST00000278385 CHCHD3Q9NX63 227 aaKnown RBP4.77□□□□□ -1.65
CD44-202ENST00000278385 AATFQ9NY61 560 aaKnown RBP eCLIP4.77□□□□□ -1.65
CD44-202ENST00000278385 PPP4R1LQ9P1A2 415 aa4.77□□□□□ -1.65
CD44-202ENST00000278385 IL19Q9UHD0 177 aa4.77□□□□□ -1.65
CD44-202ENST00000278385 PRSS50Q9UI38 385 aa4.77□□□□□ -1.65
CD44-202ENST00000278385 DNAI1Q9UI46 699 aa4.77□□□□□ -1.65
CD44-202ENST00000278385 MAGEL2Q9UJ55 1249 aa4.77□□□□□ -1.65
CD44-202ENST00000278385 OAZ3Q9UMX2 235 aa4.77□□□□□ -1.65
CD44-202ENST00000278385 DAPP1Q9UN19 280 aa4.77□□□□□ -1.65
CD44-202ENST00000278385 PCDHA1Q9Y5I3 950 aa4.77□□□□□ -1.65
CD44-202ENST00000278385 CLDN16Q9Y5I7 305 aa4.77□□□□□ -1.65
CD44-202ENST00000278385 RBM8AQ9Y5S9 174 aaKnown RBP4.77□□□□□ -1.65
CD44-202ENST00000278385 CDY2AQ9Y6F7 541 aa4.77□□□□□ -1.65
CD44-202ENST00000278385 SESN1Q9Y6P5 492 aa4.77□□□□□ -1.65
CD44-202ENST00000278385 ABCC12Q96J65 1359 aa4.77□□□□□ -1.65
CD44-202ENST00000278385 UTRNP46939 3433 aa4.76□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms