RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 PIDD1Q9HB75 910 aa16.9■□□□□ 0.3
VPS54-201ENST00000272322 NMUR1Q9HB89 426 aa16.9■□□□□ 0.3
VPS54-201ENST00000272322 NT5MQ9NPB1 228 aa16.9■□□□□ 0.3
VPS54-201ENST00000272322 SSX2IPQ9Y2D8 614 aa16.9■□□□□ 0.3
VPS54-201ENST00000272322 TRIM13O60858 407 aa16.9■□□□□ 0.3
VPS54-201ENST00000272322 PPIDQ08752 370 aaKnown RBP16.9■□□□□ 0.3
VPS54-201ENST00000272322 TUBB3Q13509 450 aa16.9■□□□□ 0.3
VPS54-201ENST00000272322 GRAMD1BQ3KR37 738 aa16.9■□□□□ 0.3
VPS54-201ENST00000272322 ARCQ7LC44 396 aa16.9■□□□□ 0.3
VPS54-201ENST00000272322 SNX32Q86XE0 403 aa16.9■□□□□ 0.3
VPS54-201ENST00000272322 CCNJLQ8IV13 435 aa16.9■□□□□ 0.3
VPS54-201ENST00000272322 FSTL5Q8N475 847 aaPredicted RBP16.9■□□□□ 0.3
VPS54-201ENST00000272322 ENDOVQ8N8Q3 282 aaKnown RBP16.9■□□□□ 0.3
VPS54-201ENST00000272322 TMA16Q96EY4 203 aaKnown RBP16.9■□□□□ 0.3
VPS54-201ENST00000272322 SLC27A5Q9Y2P5 690 aa16.9■□□□□ 0.3
VPS54-201ENST00000272322 C9JVG2 144 aa16.89■□□□□ 0.29
VPS54-201ENST00000272322 CDC42EP1Q00587 391 aa16.89■□□□□ 0.29
VPS54-201ENST00000272322 TRPV1Q8NER1 839 aa16.89■□□□□ 0.29
VPS54-201ENST00000272322 NAT14Q8WUY8 206 aa16.89■□□□□ 0.29
VPS54-201ENST00000272322 GBA3Q9H227 469 aa16.89■□□□□ 0.29
VPS54-201ENST00000272322 ZDHHC2Q9UIJ5 367 aa16.89■□□□□ 0.29
VPS54-201ENST00000272322 CRYL1Q9Y2S2 319 aa16.89■□□□□ 0.29
VPS54-201ENST00000272322 G3V2L1 256 aa16.89■□□□□ 0.29
VPS54-201ENST00000272322 GNAT1P11488 350 aa16.89■□□□□ 0.29
VPS54-201ENST00000272322 SLC5A3P53794 718 aa16.89■□□□□ 0.29
VPS54-201ENST00000272322 TBL3Q12788 808 aaKnown RBP16.89■□□□□ 0.29
VPS54-201ENST00000272322 PRPSAP1Q14558 356 aa16.89■□□□□ 0.29
VPS54-201ENST00000272322 RBM20Q5T481 1227 aaKnown RBP16.89■□□□□ 0.29
VPS54-201ENST00000272322 CST9Q5W186 159 aa16.89■□□□□ 0.29
VPS54-201ENST00000272322 RPAINQ86UA6 219 aa16.89■□□□□ 0.29
VPS54-201ENST00000272322 ATAD1Q8NBU5 361 aa16.89■□□□□ 0.29
VPS54-201ENST00000272322 TCF7L2Q9NQB0 619 aa16.89■□□□□ 0.29
VPS54-201ENST00000272322 ACTL7AQ9Y615 435 aa16.89■□□□□ 0.29
VPS54-201ENST00000272322 OR1G1P47890 313 aa16.89■□□□□ 0.29
VPS54-201ENST00000272322 CDH17Q12864 832 aa16.89■□□□□ 0.29
VPS54-201ENST00000272322 BLMHQ13867 455 aa16.89■□□□□ 0.29
VPS54-201ENST00000272322 CNSTQ6PJW8 725 aa16.89■□□□□ 0.29
VPS54-201ENST00000272322 TMEM135Q86UB9 458 aa16.89■□□□□ 0.29
VPS54-201ENST00000272322 ZNF280BQ86YH2 543 aa16.89■□□□□ 0.29
VPS54-201ENST00000272322 PHC3Q8NDX5 983 aa16.89■□□□□ 0.29
VPS54-201ENST00000272322 CYP2S1Q96SQ9 504 aa16.89■□□□□ 0.29
VPS54-201ENST00000272322 KCTD3Q9Y597 815 aa16.89■□□□□ 0.29
VPS54-201ENST00000272322 GOLGA8CPA6NN73 597 aa16.88■□□□□ 0.29
VPS54-201ENST00000272322 GSTA2P09210 222 aa16.88■□□□□ 0.29
VPS54-201ENST00000272322 HOXD8P13378 290 aaPredicted RBP16.88■□□□□ 0.29
VPS54-201ENST00000272322 ELNP15502 786 aa16.88■□□□□ 0.29
VPS54-201ENST00000272322 PCSK1P29120 753 aa16.88■□□□□ 0.29
VPS54-201ENST00000272322 CTGFP29279 349 aa16.88■□□□□ 0.29
VPS54-201ENST00000272322 SLC12A2P55011 1212 aa16.88■□□□□ 0.29
VPS54-201ENST00000272322 EFEMP1Q12805 493 aa16.88■□□□□ 0.29
VPS54-201ENST00000272322 TMC7Q7Z402 723 aa16.88■□□□□ 0.29
VPS54-201ENST00000272322 METTL23Q86XA0 190 aa16.88■□□□□ 0.29
VPS54-201ENST00000272322 SPATA2LQ8IUW3 424 aaPredicted RBP16.88■□□□□ 0.29
VPS54-201ENST00000272322 GABRQQ9UN88 632 aa16.88■□□□□ 0.29
VPS54-201ENST00000272322 CDH23Q9H251 3354 aa16.88■□□□□ 0.29
VPS54-201ENST00000272322 A0A1W2PQH9 124 aa16.88■□□□□ 0.29
VPS54-201ENST00000272322 NT5C1B-RDH14C9J2C7 533 aa16.88■□□□□ 0.29
VPS54-201ENST00000272322 J3KR12 359 aa16.88■□□□□ 0.29
VPS54-201ENST00000272322 B4GALT3O60512 393 aa16.88■□□□□ 0.29
VPS54-201ENST00000272322 HNRNPCL1O60812 293 aaKnown RBP16.88■□□□□ 0.29
VPS54-201ENST00000272322 SMNDC1O75940 238 aaKnown RBP eCLIP16.88■□□□□ 0.29
VPS54-201ENST00000272322 HLA-DQB2P05538 268 aa16.88■□□□□ 0.29
VPS54-201ENST00000272322 SKIP12755 728 aa16.88■□□□□ 0.29
VPS54-201ENST00000272322 CCNHP51946 323 aaPredicted RBP16.88■□□□□ 0.29
VPS54-201ENST00000272322 TRIP10Q15642 601 aa16.88■□□□□ 0.29
VPS54-201ENST00000272322 ITPRIPL1Q6GPH6 555 aa16.88■□□□□ 0.29
VPS54-201ENST00000272322 TIFABQ6ZNK6 161 aa16.88■□□□□ 0.29
VPS54-201ENST00000272322 STX18Q9P2W9 335 aaKnown RBP16.88■□□□□ 0.29
VPS54-201ENST00000272322 HCSTQ9UBK5 93 aa16.88■□□□□ 0.29
VPS54-201ENST00000272322 TSPAN3O60637 253 aa16.87■□□□□ 0.29
VPS54-201ENST00000272322 CNTFP26441 200 aa16.87■□□□□ 0.29
VPS54-201ENST00000272322 TAS2R39P59534 338 aa16.87■□□□□ 0.29
VPS54-201ENST00000272322 UPP1Q16831 310 aa16.87■□□□□ 0.29
VPS54-201ENST00000272322 MAB21L3Q8N8X9 362 aa16.87■□□□□ 0.29
VPS54-201ENST00000272322 GTF3C2Q8WUA4 911 aaPredicted RBP16.87■□□□□ 0.29
VPS54-201ENST00000272322 KCTD13Q8WZ19 329 aa16.87■□□□□ 0.29
VPS54-201ENST00000272322 NAT9Q9BTE0 207 aa16.87■□□□□ 0.29
VPS54-201ENST00000272322 SLC38A7Q9NVC3 462 aa16.87■□□□□ 0.29
VPS54-201ENST00000272322 A0A0U1RQS6 177 aa16.87■□□□□ 0.29
VPS54-201ENST00000272322 HHLA1C9JL84 531 aa16.87■□□□□ 0.29
VPS54-201ENST00000272322 CNTN5O94779 1100 aa16.87■□□□□ 0.29
VPS54-201ENST00000272322 LMNAP02545 664 aaKnown RBP16.87■□□□□ 0.29
VPS54-201ENST00000272322 LRPAP1P30533 357 aa16.87■□□□□ 0.29
VPS54-201ENST00000272322 AP2B1P63010 937 aa16.87■□□□□ 0.29
VPS54-201ENST00000272322 NAIF1Q69YI7 327 aaPredicted RBP16.87■□□□□ 0.29
VPS54-201ENST00000272322 MFSD6LQ8IWD5 586 aa16.87■□□□□ 0.29
VPS54-201ENST00000272322 SH3RF2Q8TEC5 729 aa16.87■□□□□ 0.29
VPS54-201ENST00000272322 CASS4Q9NQ75 786 aa16.87■□□□□ 0.29
VPS54-201ENST00000272322 LINGO3P0C6S8 592 aa16.87■□□□□ 0.29
VPS54-201ENST00000272322 TFEBP19484 476 aa16.87■□□□□ 0.29
VPS54-201ENST00000272322 CPOXP36551 454 aa16.87■□□□□ 0.29
VPS54-201ENST00000272322 LSM12Q3MHD2 195 aaKnown RBP16.87■□□□□ 0.29
VPS54-201ENST00000272322 SLC45A3Q96JT2 553 aa16.87■□□□□ 0.29
VPS54-201ENST00000272322 CDRT15Q96T59 188 aa16.87■□□□□ 0.29
VPS54-201ENST00000272322 ILKAPQ9H0C8 392 aaPredicted RBP16.87■□□□□ 0.29
VPS54-201ENST00000272322 DMAP1Q9NPF5 467 aaPredicted RBP16.87■□□□□ 0.29
VPS54-201ENST00000272322 RCOR3Q9P2K3 495 aaPredicted RBP16.87■□□□□ 0.29
VPS54-201ENST00000272322 TRPV2Q9Y5S1 764 aa16.87■□□□□ 0.29
VPS54-201ENST00000272322 A0A0G2JMZ2 1700 aa16.87■□□□□ 0.29
VPS54-201ENST00000272322 LRRC37A2A6NM11 1700 aa16.87■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 62.9 ms