RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 C12orf76Q8N812 135 aaPredicted RBP16.78■□□□□ 0.28
USP4-201ENST00000265560 DYDC1Q8WWB3 177 aa16.78■□□□□ 0.28
USP4-201ENST00000265560 SERAC1Q96JX3 654 aa16.78■□□□□ 0.28
USP4-201ENST00000265560 AGAP2Q99490 1192 aa16.78■□□□□ 0.28
USP4-201ENST00000265560 FSD1LQ9BXM9 530 aa16.78■□□□□ 0.28
USP4-201ENST00000265560 BFARQ9NZS9 450 aa16.78■□□□□ 0.28
USP4-201ENST00000265560 HSFX1Q9UBD0 423 aa16.78■□□□□ 0.28
USP4-201ENST00000265560 CLEC4EQ9ULY5 219 aa16.78■□□□□ 0.28
USP4-201ENST00000265560 PCDHA11Q9Y5I1 949 aa16.78■□□□□ 0.28
USP4-201ENST00000265560 PRKCGP05129 697 aa16.77■□□□□ 0.28
USP4-201ENST00000265560 PIRTP0C851 137 aa16.77■□□□□ 0.28
USP4-201ENST00000265560 NMBRP28336 390 aa16.77■□□□□ 0.28
USP4-201ENST00000265560 HTR7P34969 479 aa16.77■□□□□ 0.28
USP4-201ENST00000265560 CDK16Q00536 496 aa16.77■□□□□ 0.28
USP4-201ENST00000265560 GNA12Q03113 381 aa16.77■□□□□ 0.28
USP4-201ENST00000265560 BBS7Q8IWZ6 715 aa16.77■□□□□ 0.28
USP4-201ENST00000265560 ING5Q8WYH8 240 aa16.77■□□□□ 0.28
USP4-201ENST00000265560 EMILIN2Q9BXX0 1053 aa16.77■□□□□ 0.28
USP4-201ENST00000265560 LRRC3Q9BY71 257 aa16.77■□□□□ 0.28
USP4-201ENST00000265560 MUC3BQ9H195 1237 aa16.77■□□□□ 0.28
USP4-201ENST00000265560 UXTQ9UBK9 157 aaPredicted RBP16.77■□□□□ 0.28
USP4-201ENST00000265560 BRWD1Q9NSI6 2320 aa16.77■□□□□ 0.28
USP4-201ENST00000265560 MZF1P28698 734 aaPredicted RBP16.77■□□□□ 0.27
USP4-201ENST00000265560 CLCN4P51793 760 aa16.77■□□□□ 0.27
USP4-201ENST00000265560 RNF219Q5W0B1 726 aaPredicted RBP16.77■□□□□ 0.27
USP4-201ENST00000265560 KLHDC10Q6PID8 442 aa16.77■□□□□ 0.27
USP4-201ENST00000265560 SP7Q8TDD2 431 aaPredicted RBP16.77■□□□□ 0.27
USP4-201ENST00000265560 SLC44A1Q8WWI5 657 aa16.77■□□□□ 0.27
USP4-201ENST00000265560 SMIM14Q96QK8 99 aa16.77■□□□□ 0.27
USP4-201ENST00000265560 APOL5Q9BWW9 433 aa16.77■□□□□ 0.27
USP4-201ENST00000265560 FRMD8Q9BZ67 464 aaPredicted RBP16.77■□□□□ 0.27
USP4-201ENST00000265560 EIF2B3Q9NR50 452 aaKnown RBP16.77■□□□□ 0.27
USP4-201ENST00000265560 CDH22Q9UJ99 828 aa16.77■□□□□ 0.27
USP4-201ENST00000265560 OBSL1O75147 1896 aa16.77■□□□□ 0.27
USP4-201ENST00000265560 TRIOO75962 3097 aa16.76■□□□□ 0.27
USP4-201ENST00000265560 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP16.76■□□□□ 0.27
USP4-201ENST00000265560 WDR91A4D1P6 747 aa16.76■□□□□ 0.27
USP4-201ENST00000265560 TRIM49D1C9J1S8 452 aa16.76■□□□□ 0.27
USP4-201ENST00000265560 CCL22O00626 93 aa16.76■□□□□ 0.27
USP4-201ENST00000265560 C1RP00736 705 aa16.76■□□□□ 0.27
USP4-201ENST00000265560 RENBPP51606 427 aa16.76■□□□□ 0.27
USP4-201ENST00000265560 ZNF177Q13360 481 aaPredicted RBP16.76■□□□□ 0.27
USP4-201ENST00000265560 SLC5A9Q2M3M2 681 aa16.76■□□□□ 0.27
USP4-201ENST00000265560 TIGD7Q6NT04 549 aaPredicted RBP16.76■□□□□ 0.27
USP4-201ENST00000265560 PLD4Q96BZ4 506 aa16.76■□□□□ 0.27
USP4-201ENST00000265560 MRGPRX2Q96LB1 330 aa16.76■□□□□ 0.27
USP4-201ENST00000265560 CASS4Q9NQ75 786 aa16.76■□□□□ 0.27
USP4-201ENST00000265560 SLC24A2Q9UI40 661 aa16.76■□□□□ 0.27
USP4-201ENST00000265560 BUD23O43709 281 aaKnown RBP16.76■□□□□ 0.27
USP4-201ENST00000265560 CA4P22748 312 aa16.76■□□□□ 0.27
USP4-201ENST00000265560 STX2P32856 288 aa16.76■□□□□ 0.27
USP4-201ENST00000265560 RGRP47804 291 aa16.76■□□□□ 0.27
USP4-201ENST00000265560 WNT3AP56704 352 aa16.76■□□□□ 0.27
USP4-201ENST00000265560 HNRNPDQ14103 355 aaKnown RBP16.76■□□□□ 0.27
USP4-201ENST00000265560 SEPT6Q14141 434 aa16.76■□□□□ 0.27
USP4-201ENST00000265560 HSP90AA5PQ58FG0 334 aa16.76■□□□□ 0.27
USP4-201ENST00000265560 EMC10Q5UCC4 262 aa16.76■□□□□ 0.27
USP4-201ENST00000265560 RIN3Q8TB24 985 aa16.76■□□□□ 0.27
USP4-201ENST00000265560 ATXN2LQ8WWM7 1075 aaKnown RBP16.76■□□□□ 0.27
USP4-201ENST00000265560 SEMA3CQ99985 751 aa16.76■□□□□ 0.27
USP4-201ENST00000265560 TBL1YQ9BQ87 522 aa16.76■□□□□ 0.27
USP4-201ENST00000265560 PHACTR1Q9C0D0 580 aa16.76■□□□□ 0.27
USP4-201ENST00000265560 ATP13A1Q9HD20 1204 aa16.76■□□□□ 0.27
USP4-201ENST00000265560 ASAH2Q9NR71 780 aa16.76■□□□□ 0.27
USP4-201ENST00000265560 SLC2A6Q9UGQ3 507 aa16.76■□□□□ 0.27
USP4-201ENST00000265560 MIA3Q5JRA6 1907 aa16.76■□□□□ 0.27
USP4-201ENST00000265560 H0Y626 953 aa16.76■□□□□ 0.27
USP4-201ENST00000265560 RHOCP08134 193 aa16.76■□□□□ 0.27
USP4-201ENST00000265560 BMP1P13497 986 aa16.76■□□□□ 0.27
USP4-201ENST00000265560 HOXD9P28356 352 aaPredicted RBP16.76■□□□□ 0.27
USP4-201ENST00000265560 TEAD2Q15562 447 aa16.76■□□□□ 0.27
USP4-201ENST00000265560 FCRL5Q96RD9 977 aa16.76■□□□□ 0.27
USP4-201ENST00000265560 SMC6Q96SB8 1091 aa16.76■□□□□ 0.27
USP4-201ENST00000265560 LRRC40Q9H9A6 602 aa16.76■□□□□ 0.27
USP4-201ENST00000265560 GREM1O60565 184 aa16.75■□□□□ 0.27
USP4-201ENST00000265560 PYGBP11216 843 aa16.75■□□□□ 0.27
USP4-201ENST00000265560 MLNP12872 115 aa16.75■□□□□ 0.27
USP4-201ENST00000265560 ATP5DP30049 168 aa16.75■□□□□ 0.27
USP4-201ENST00000265560 LBRQ14739 615 aaKnown RBP16.75■□□□□ 0.27
USP4-201ENST00000265560 PABPC1LQ4VXU2 614 aaKnown RBP16.75■□□□□ 0.27
USP4-201ENST00000265560 RABGAP1LQ5R372 815 aa16.75■□□□□ 0.27
USP4-201ENST00000265560 DENND5AQ6IQ26 1287 aa16.75■□□□□ 0.27
USP4-201ENST00000265560 ADGRD2Q7Z7M1 963 aa16.75■□□□□ 0.27
USP4-201ENST00000265560 ELMOD1Q8N336 334 aa16.75■□□□□ 0.27
USP4-201ENST00000265560 DDI1Q8WTU0 396 aa16.75■□□□□ 0.27
USP4-201ENST00000265560 LRRC39Q96DD0 335 aa16.75■□□□□ 0.27
USP4-201ENST00000265560 TMA16Q96EY4 203 aaKnown RBP16.75■□□□□ 0.27
USP4-201ENST00000265560 NSMCE3Q96MG7 304 aa16.75■□□□□ 0.27
USP4-201ENST00000265560 DHRS4Q9BTZ2 278 aa16.75■□□□□ 0.27
USP4-201ENST00000265560 SLC13A1Q9BZW2 595 aa16.75■□□□□ 0.27
USP4-201ENST00000265560 DNMT3BQ9UBC3 853 aaKnown RBP16.75■□□□□ 0.27
USP4-201ENST00000265560 MYLKQ15746 1914 aa16.75■□□□□ 0.27
USP4-201ENST00000265560 A0A0U1RQS6 177 aa16.75■□□□□ 0.27
USP4-201ENST00000265560 SUN1O94901 812 aa16.75■□□□□ 0.27
USP4-201ENST00000265560 SP100P23497 879 aaPredicted RBP16.75■□□□□ 0.27
USP4-201ENST00000265560 QPCTQ16769 361 aa16.75■□□□□ 0.27
USP4-201ENST00000265560 ANO4Q32M45 955 aa16.75■□□□□ 0.27
USP4-201ENST00000265560 GPR158Q5T848 1215 aa16.75■□□□□ 0.27
USP4-201ENST00000265560 CCDC149Q6ZUS6 474 aa16.75■□□□□ 0.27
USP4-201ENST00000265560 TDRPQ86YL5 185 aa16.75■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms