RNA–Protein interactions for RNA: ENST00000252816.10

LSM4-201, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2 BASIC

Gene LSM4, Length 986 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-201ENST00000252816 VSTM4Q8IW00 320 aa23.43■■□□□ 1.34
LSM4-201ENST00000252816 MINDY1Q8N5J2 469 aa23.43■■□□□ 1.34
LSM4-201ENST00000252816 SNRNP25Q9BV90 132 aaKnown RBP23.43■■□□□ 1.34
LSM4-201ENST00000252816 CEP44Q9C0F1 390 aa23.43■■□□□ 1.34
LSM4-201ENST00000252816 NENFQ9UMX5 172 aa23.43■■□□□ 1.34
LSM4-201ENST00000252816 LRRC72A6NJI9 287 aa23.42■■□□□ 1.34
LSM4-201ENST00000252816 CD27P26842 260 aa23.42■■□□□ 1.34
LSM4-201ENST00000252816 EIF4A3P38919 411 aaKnown RBP23.42■■□□□ 1.34
LSM4-201ENST00000252816 ERMARDQ5T6L9 678 aa23.42■■□□□ 1.34
LSM4-201ENST00000252816 AGBL4Q5VU57 503 aa23.42■■□□□ 1.34
LSM4-201ENST00000252816 ALKBH5Q6P6C2 394 aaKnown RBP23.42■■□□□ 1.34
LSM4-201ENST00000252816 LEKR1Q6ZMV7 388 aa23.42■■□□□ 1.34
LSM4-201ENST00000252816 CCDC114Q96M63 670 aa23.42■■□□□ 1.34
LSM4-201ENST00000252816 KLC2Q9H0B6 622 aa23.42■■□□□ 1.34
LSM4-201ENST00000252816 DHX35Q9H5Z1 703 aaKnown RBP23.42■■□□□ 1.34
LSM4-201ENST00000252816 CATSPERBQ9H7T0 1116 aa23.42■■□□□ 1.34
LSM4-201ENST00000252816 EBF2Q9HAK2 575 aa23.42■■□□□ 1.34
LSM4-201ENST00000252816 TM9SF3Q9HD45 589 aa23.42■■□□□ 1.34
LSM4-201ENST00000252816 FARP1Q9Y4F1 1045 aaPredicted RBP23.42■■□□□ 1.34
LSM4-201ENST00000252816 PRPSAP2O60256 369 aa23.41■■□□□ 1.34
LSM4-201ENST00000252816 CYP1A2P05177 515 aa23.41■■□□□ 1.34
LSM4-201ENST00000252816 TPI1P60174 286 aa23.41■■□□□ 1.34
LSM4-201ENST00000252816 CCDC122Q5T0U0 273 aa23.41■■□□□ 1.34
LSM4-201ENST00000252816 PCDH20Q8N6Y1 951 aaKnown RBP23.41■■□□□ 1.34
LSM4-201ENST00000252816 TMIEQ8NEW7 156 aa23.41■■□□□ 1.34
LSM4-201ENST00000252816 ARRDC3Q96B67 414 aa23.41■■□□□ 1.34
LSM4-201ENST00000252816 ARHGEF26Q96DR7 871 aa23.41■■□□□ 1.34
LSM4-201ENST00000252816 HMCESQ96FZ2 354 aa23.41■■□□□ 1.34
LSM4-201ENST00000252816 KCTD15Q96SI1 283 aaPredicted RBP23.41■■□□□ 1.34
LSM4-201ENST00000252816 DNAJC7Q99615 494 aa23.41■■□□□ 1.34
LSM4-201ENST00000252816 HPCAL4Q9UM19 191 aa23.41■■□□□ 1.34
LSM4-201ENST00000252816 CXorf51AA0A1B0GTR3 108 aa23.4■■□□□ 1.34
LSM4-201ENST00000252816 RASA4BC9J798 803 aa23.4■■□□□ 1.34
LSM4-201ENST00000252816 FGF10O15520 208 aaPredicted RBP23.4■■□□□ 1.34
LSM4-201ENST00000252816 RASA4O43374 803 aa23.4■■□□□ 1.34
LSM4-201ENST00000252816 KDELR3O43731 214 aa23.4■■□□□ 1.34
LSM4-201ENST00000252816 TCF4P15884 667 aa23.4■■□□□ 1.34
LSM4-201ENST00000252816 KCNA4P22459 653 aa23.4■■□□□ 1.34
LSM4-201ENST00000252816 HTR7P34969 479 aa23.4■■□□□ 1.34
LSM4-201ENST00000252816 RECQLP46063 649 aaPredicted RBP23.4■■□□□ 1.34
LSM4-201ENST00000252816 CSNK1EP49674 416 aaKnown RBP23.4■■□□□ 1.34
LSM4-201ENST00000252816 DNA2P51530 1060 aa23.4■■□□□ 1.34
LSM4-201ENST00000252816 CCR5P51681 352 aa23.4■■□□□ 1.34
LSM4-201ENST00000252816 PPP2CBP62714 309 aa23.4■■□□□ 1.34
LSM4-201ENST00000252816 PPP2CAP67775 309 aa23.4■■□□□ 1.34
LSM4-201ENST00000252816 TRIM14Q14142 442 aa23.4■■□□□ 1.34
LSM4-201ENST00000252816 ARSIQ5FYB1 569 aa23.4■■□□□ 1.34
LSM4-201ENST00000252816 LAYNQ6UX15 382 aa23.4■■□□□ 1.34
LSM4-201ENST00000252816 UMODL1-AS1Q8N2C9 162 aa23.4■■□□□ 1.34
LSM4-201ENST00000252816 OR8K1Q8NGG5 319 aa23.4■■□□□ 1.34
LSM4-201ENST00000252816 GRIN3AQ8TCU5 1115 aa23.4■■□□□ 1.34
LSM4-201ENST00000252816 BTBD6Q96KE9 485 aa23.4■■□□□ 1.34
LSM4-201ENST00000252816 OSGEPQ9NPF4 335 aa23.4■■□□□ 1.34
LSM4-201ENST00000252816 IL36AQ9UHA7 158 aa23.4■■□□□ 1.34
LSM4-201ENST00000252816 WASF2Q9Y6W5 498 aa23.4■■□□□ 1.34
LSM4-201ENST00000252816 KNL1Q8NG31 2342 aa23.4■■□□□ 1.34
LSM4-201ENST00000252816 A0A1B0GVT2 93 aa23.39■■□□□ 1.33
LSM4-201ENST00000252816 A0A1W2PPC4 97 aa23.39■■□□□ 1.33
LSM4-201ENST00000252816 EEF2KO00418 725 aaKnown RBP23.39■■□□□ 1.33
LSM4-201ENST00000252816 KPNA3O00505 521 aaPredicted RBP23.39■■□□□ 1.33
LSM4-201ENST00000252816 SLC7A4O43246 635 aa23.39■■□□□ 1.33
LSM4-201ENST00000252816 PLRG1O43660 514 aaKnown RBP23.39■■□□□ 1.33
LSM4-201ENST00000252816 LEFTY1O75610 366 aa23.39■■□□□ 1.33
LSM4-201ENST00000252816 GJB3O75712 270 aa23.39■■□□□ 1.33
LSM4-201ENST00000252816 KCNK5O95279 499 aa23.39■■□□□ 1.33
LSM4-201ENST00000252816 PRNPP04156 253 aa23.39■■□□□ 1.33
LSM4-201ENST00000252816 IL1R2P27930 398 aa23.39■■□□□ 1.33
LSM4-201ENST00000252816 PCK1P35558 622 aa23.39■■□□□ 1.33
LSM4-201ENST00000252816 AFF3P51826 1226 aaKnown RBP23.39■■□□□ 1.33
LSM4-201ENST00000252816 YBEYP58557 167 aaPredicted RBP23.39■■□□□ 1.33
LSM4-201ENST00000252816 TAS2R38P59533 333 aa23.39■■□□□ 1.33
LSM4-201ENST00000252816 CARD16Q5EG05 197 aa23.39■■□□□ 1.33
LSM4-201ENST00000252816 PIP5KL1Q5T9C9 394 aa23.39■■□□□ 1.33
LSM4-201ENST00000252816 ISG20Q96AZ6 181 aaKnown RBP23.39■■□□□ 1.33
LSM4-201ENST00000252816 NUP85Q9BW27 656 aa23.39■■□□□ 1.33
LSM4-201ENST00000252816 TM6SF2Q9BZW4 377 aa23.39■■□□□ 1.33
LSM4-201ENST00000252816 ZDHHC5Q9C0B5 715 aa23.39■■□□□ 1.33
LSM4-201ENST00000252816 DNAAF2Q9NVR5 837 aaKnown RBP23.39■■□□□ 1.33
LSM4-201ENST00000252816 TBC1D3DA0A087WVF3 549 aa23.38■■□□□ 1.33
LSM4-201ENST00000252816 TBC1D3IA0A087WXS9 549 aa23.38■■□□□ 1.33
LSM4-201ENST00000252816 TBC1D3EA0A087X179 549 aa23.38■■□□□ 1.33
LSM4-201ENST00000252816 TBC1D3KA0A087X1G2 549 aa23.38■■□□□ 1.33
LSM4-201ENST00000252816 TBC1D3FA6NER0 549 aaPredicted RBP23.38■■□□□ 1.33
LSM4-201ENST00000252816 EIF3CLB5ME19 914 aaKnown RBP23.38■■□□□ 1.33
LSM4-201ENST00000252816 TBC1D3LB9A6J9 549 aa23.38■■□□□ 1.33
LSM4-201ENST00000252816 GIPC1O14908 333 aa23.38■■□□□ 1.33
LSM4-201ENST00000252816 OPHN1O60890 802 aa23.38■■□□□ 1.33
LSM4-201ENST00000252816 TBC1D3HP0C7X1 549 aa23.38■■□□□ 1.33
LSM4-201ENST00000252816 CCNHP51946 323 aaPredicted RBP23.38■■□□□ 1.33
LSM4-201ENST00000252816 GEMIN4P57678 1058 aaKnown RBP23.38■■□□□ 1.33
LSM4-201ENST00000252816 ACAP1Q15027 740 aa23.38■■□□□ 1.33
LSM4-201ENST00000252816 ASTE1Q2TB18 679 aaPredicted RBP23.38■■□□□ 1.33
LSM4-201ENST00000252816 TBC1D3GQ6DHY5 549 aa23.38■■□□□ 1.33
LSM4-201ENST00000252816 TBC1D3CQ6IPX1 549 aa23.38■■□□□ 1.33
LSM4-201ENST00000252816 ZNF354CQ86Y25 554 aa23.38■■□□□ 1.33
LSM4-201ENST00000252816 PSTKQ8IV42 348 aaKnown RBP23.38■■□□□ 1.33
LSM4-201ENST00000252816 TBC1D3Q8IZP1 549 aaPredicted RBP23.38■■□□□ 1.33
LSM4-201ENST00000252816 SLC6A18Q96N87 628 aa23.38■■□□□ 1.33
LSM4-201ENST00000252816 EIF3CQ99613 913 aaKnown RBP23.38■■□□□ 1.33
LSM4-201ENST00000252816 KDM4CQ9H3R0 1056 aa23.38■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms