RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 SEMA3BQ13214 749 aa19.7■□□□□ 0.74
CLN3-260ENST00000637578 MAMLD1Q13495 774 aa19.7■□□□□ 0.74
CLN3-260ENST00000637578 KIAA0895LQ68EN5 471 aa19.7■□□□□ 0.74
CLN3-260ENST00000637578 PLEKHA7Q6IQ23 1121 aa19.7■□□□□ 0.74
CLN3-260ENST00000637578 MINDY1Q8N5J2 469 aa19.7■□□□□ 0.74
CLN3-260ENST00000637578 OR7D4Q8NG98 312 aa19.7■□□□□ 0.74
CLN3-260ENST00000637578 OR8D1Q8WZ84 308 aa19.7■□□□□ 0.74
CLN3-260ENST00000637578 OMDQ99983 421 aa19.7■□□□□ 0.74
CLN3-260ENST00000637578 GTPBP2Q9BX10 602 aaKnown RBP19.7■□□□□ 0.74
CLN3-260ENST00000637578 MIR1-1HGQ9H1L0 117 aa19.7■□□□□ 0.74
CLN3-260ENST00000637578 TMEM248Q9NWD8 314 aa19.7■□□□□ 0.74
CLN3-260ENST00000637578 SARDHQ9UL12 918 aa19.7■□□□□ 0.74
CLN3-260ENST00000637578 BZW2Q9Y6E2 419 aaKnown RBP19.7■□□□□ 0.74
CLN3-260ENST00000637578 ANKRD62A6NC57 917 aa19.69■□□□□ 0.74
CLN3-260ENST00000637578 K7ERQ8 282 aa19.69■□□□□ 0.74
CLN3-260ENST00000637578 DDX3XO00571 662 aaKnown RBP eCLIP19.69■□□□□ 0.743e-8■■■□□ 15.1
CLN3-260ENST00000637578 IL1BP01584 269 aa19.69■□□□□ 0.74
CLN3-260ENST00000637578 CD27P26842 260 aa19.69■□□□□ 0.74
CLN3-260ENST00000637578 MAPKAPK2P49137 400 aa19.69■□□□□ 0.74
CLN3-260ENST00000637578 ATXN3P54252 364 aaPredicted RBP19.69■□□□□ 0.74
CLN3-260ENST00000637578 BNC1Q01954 994 aa19.69■□□□□ 0.74
CLN3-260ENST00000637578 OGDHQ02218 1023 aa19.69■□□□□ 0.74
CLN3-260ENST00000637578 GNA12Q03113 381 aa19.69■□□□□ 0.74
CLN3-260ENST00000637578 UAP1L1Q3KQV9 507 aa19.69■□□□□ 0.74
CLN3-260ENST00000637578 N4BP2L1Q5TBK1 243 aaPredicted RBP19.69■□□□□ 0.74
CLN3-260ENST00000637578 Q6ZVU0 165 aa19.69■□□□□ 0.74
CLN3-260ENST00000637578 SLFN11Q7Z7L1 901 aa19.69■□□□□ 0.74
CLN3-260ENST00000637578 DSG4Q86SJ6 1040 aa19.69■□□□□ 0.74
CLN3-260ENST00000637578 PIP4P1Q86T03 277 aa19.69■□□□□ 0.74
CLN3-260ENST00000637578 HDDC3Q8N4P3 179 aa19.69■□□□□ 0.74
CLN3-260ENST00000637578 TC2NQ8N9U0 490 aa19.69■□□□□ 0.74
CLN3-260ENST00000637578 SPC24Q8NBT2 197 aa19.69■□□□□ 0.74
CLN3-260ENST00000637578 GANCQ8TET4 914 aa19.69■□□□□ 0.74
CLN3-260ENST00000637578 ACE2Q9BYF1 805 aaPredicted RBP19.69■□□□□ 0.74
CLN3-260ENST00000637578 ARHGAP20Q9P2F6 1191 aa19.69■□□□□ 0.74
CLN3-260ENST00000637578 SMAD6O43541 496 aaKnown RBP19.68■□□□□ 0.74
CLN3-260ENST00000637578 ZNF821O75541 412 aaPredicted RBP19.68■□□□□ 0.74
CLN3-260ENST00000637578 CEACAM1P13688 526 aa19.68■□□□□ 0.74
CLN3-260ENST00000637578 GLDCP23378 1020 aa19.68■□□□□ 0.74
CLN3-260ENST00000637578 L1CAMP32004 1257 aa19.68■□□□□ 0.74
CLN3-260ENST00000637578 METAP1P53582 386 aa19.68■□□□□ 0.74
CLN3-260ENST00000637578 AIF1P55008 147 aa19.68■□□□□ 0.74
CLN3-260ENST00000637578 SLC20A2Q08357 652 aa19.68■□□□□ 0.74
CLN3-260ENST00000637578 GRIK2Q13002 908 aa19.68■□□□□ 0.74
CLN3-260ENST00000637578 TSR1Q2NL82 804 aaKnown RBP19.68■□□□□ 0.74
CLN3-260ENST00000637578 FAM46CQ5VWP2 391 aa19.68■□□□□ 0.74
CLN3-260ENST00000637578 NCEH1Q6PIU2 408 aa19.68■□□□□ 0.74
CLN3-260ENST00000637578 ATP11CQ8NB49 1132 aa19.68■□□□□ 0.74
CLN3-260ENST00000637578 OR2A12Q8NGT7 310 aa19.68■□□□□ 0.74
CLN3-260ENST00000637578 OR2I1PQ8NGU4 316 aa19.68■□□□□ 0.74
CLN3-260ENST00000637578 OR2T34Q8NGX1 318 aa19.68■□□□□ 0.74
CLN3-260ENST00000637578 NDFIP2Q9NV92 336 aa19.68■□□□□ 0.74
CLN3-260ENST00000637578 PARVAQ9NVD7 372 aa19.68■□□□□ 0.74
CLN3-260ENST00000637578 ADAMTS9Q9P2N4 1935 aa19.67■□□□□ 0.74
CLN3-260ENST00000637578 LRRC72A6NJI9 287 aa19.67■□□□□ 0.74
CLN3-260ENST00000637578 OPHN1O60890 802 aa19.67■□□□□ 0.74
CLN3-260ENST00000637578 FSBPO95073 299 aa19.67■□□□□ 0.74
CLN3-260ENST00000637578 CCR5P51681 352 aa19.67■□□□□ 0.74
CLN3-260ENST00000637578 AFF3P51826 1226 aaKnown RBP19.67■□□□□ 0.74
CLN3-260ENST00000637578 ADPRHP54922 357 aa19.67■□□□□ 0.74
CLN3-260ENST00000637578 SLC14A1Q13336 389 aa19.67■□□□□ 0.74
CLN3-260ENST00000637578 PSAPL1Q6NUJ1 521 aa19.67■□□□□ 0.74
CLN3-260ENST00000637578 DCUN1D2Q6PH85 259 aa19.67■□□□□ 0.74
CLN3-260ENST00000637578 LINGO4Q6UY18 593 aa19.67■□□□□ 0.74
CLN3-260ENST00000637578 SNX19Q92543 992 aa19.67■□□□□ 0.74
CLN3-260ENST00000637578 TBC1D31Q96DN5 1066 aa19.67■□□□□ 0.74
CLN3-260ENST00000637578 ZNHIT6Q9NWK9 470 aaKnown RBP19.67■□□□□ 0.74
CLN3-260ENST00000637578 FZD10Q9ULW2 581 aa19.67■□□□□ 0.74
CLN3-260ENST00000637578 A0A1W2PPC4 97 aa19.66■□□□□ 0.74
CLN3-260ENST00000637578 TMCO5BA8MYB1 307 aa19.66■□□□□ 0.74
CLN3-260ENST00000637578 CBX4O00257 560 aa19.66■□□□□ 0.74
CLN3-260ENST00000637578 GIPC1O14908 333 aa19.66■□□□□ 0.74
CLN3-260ENST00000637578 SLC7A4O43246 635 aa19.66■□□□□ 0.74
CLN3-260ENST00000637578 CD160O95971 181 aa19.66■□□□□ 0.74
CLN3-260ENST00000637578 FTLP02792 175 aaPredicted RBP19.66■□□□□ 0.74
CLN3-260ENST00000637578 CD59P13987 128 aa19.66■□□□□ 0.74
CLN3-260ENST00000637578 ETFBP38117 255 aa19.66■□□□□ 0.74
CLN3-260ENST00000637578 NOVA1P51513 510 aaKnown RBP19.66■□□□□ 0.74
CLN3-260ENST00000637578 ARF5P84085 180 aa19.66■□□□□ 0.74
CLN3-260ENST00000637578 RETSATQ6NUM9 610 aa19.66■□□□□ 0.74
CLN3-260ENST00000637578 RWDD4Q6NW29 188 aaKnown RBP19.66■□□□□ 0.74
CLN3-260ENST00000637578 PYROXD2Q8N2H3 581 aa19.66■□□□□ 0.74
CLN3-260ENST00000637578 TMIEQ8NEW7 156 aa19.66■□□□□ 0.74
CLN3-260ENST00000637578 PIP4K2CQ8TBX8 421 aa19.66■□□□□ 0.74
CLN3-260ENST00000637578 SPON2Q9BUD6 331 aa19.66■□□□□ 0.74
CLN3-260ENST00000637578 KDM4CQ9H3R0 1056 aa19.66■□□□□ 0.74
CLN3-260ENST00000637578 ATP13A1Q9HD20 1204 aa19.66■□□□□ 0.74
CLN3-260ENST00000637578 TM9SF3Q9HD45 589 aa19.66■□□□□ 0.74
CLN3-260ENST00000637578 TPX2Q9ULW0 747 aaKnown RBP19.66■□□□□ 0.74
CLN3-260ENST00000637578 NYNRINQ9P2P1 1898 aaKnown RBP19.66■□□□□ 0.74
CLN3-260ENST00000637578 TMEM191CA6NGB0 347 aa19.66■□□□□ 0.74
CLN3-260ENST00000637578 RTN2O75298 545 aa19.66■□□□□ 0.74
CLN3-260ENST00000637578 CTSLP07711 333 aa19.66■□□□□ 0.74
CLN3-260ENST00000637578 EIF4A3P38919 411 aaKnown RBP19.66■□□□□ 0.74
CLN3-260ENST00000637578 GRIA4P48058 902 aa19.66■□□□□ 0.74
CLN3-260ENST00000637578 CSNK1EP49674 416 aaKnown RBP19.66■□□□□ 0.74
CLN3-260ENST00000637578 SERPINH1P50454 418 aaKnown RBP19.66■□□□□ 0.74
CLN3-260ENST00000637578 IL27RAQ6UWB1 636 aa19.66■□□□□ 0.74
CLN3-260ENST00000637578 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP19.66■□□□□ 0.74
CLN3-260ENST00000637578 ARHGEF2Q92974 986 aaKnown RBP19.66■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms