RNA–Protein interactions for RNA: ENST00000626660.1

SQSTM1-216, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 274 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-216ENST00000626660 APBB3O95704 486 aa19.51■□□□□ 0.71
SQSTM1-216ENST00000626660 CDKN2BP42772 138 aa19.51■□□□□ 0.71
SQSTM1-216ENST00000626660 PEX5P50542 639 aa19.51■□□□□ 0.71
SQSTM1-216ENST00000626660 CSTF1Q05048 431 aaKnown RBP19.51■□□□□ 0.71
SQSTM1-216ENST00000626660 HNRNPA1L2Q32P51 320 aaKnown RBP19.51■□□□□ 0.71
SQSTM1-216ENST00000626660 NCBP2-AS2Q69YL0 99 aa19.51■□□□□ 0.71
SQSTM1-216ENST00000626660 TMEM92Q6UXU6 159 aa19.51■□□□□ 0.71
SQSTM1-216ENST00000626660 METTL3Q86U44 580 aaKnown RBP19.51■□□□□ 0.71
SQSTM1-216ENST00000626660 CAMKK1Q8N5S9 505 aa19.51■□□□□ 0.71
SQSTM1-216ENST00000626660 PQLC3Q8N755 202 aa19.51■□□□□ 0.71
SQSTM1-216ENST00000626660 ZNF366Q8N895 744 aa19.51■□□□□ 0.71
SQSTM1-216ENST00000626660 MYO19Q96H55 970 aa19.51■□□□□ 0.71
SQSTM1-216ENST00000626660 HES6Q96HZ4 224 aa19.51■□□□□ 0.71
SQSTM1-216ENST00000626660 HHIPQ96QV1 700 aa19.51■□□□□ 0.71
SQSTM1-216ENST00000626660 SP110Q9HB58 689 aa19.51■□□□□ 0.71
SQSTM1-216ENST00000626660 PYCARDQ9ULZ3 195 aa19.51■□□□□ 0.71
SQSTM1-216ENST00000626660 PACSIN2Q9UNF0 486 aaPredicted RBP19.51■□□□□ 0.71
SQSTM1-216ENST00000626660 RAD54BQ9Y620 910 aa19.51■□□□□ 0.71
SQSTM1-216ENST00000626660 NYNRINQ9P2P1 1898 aaKnown RBP19.51■□□□□ 0.71
SQSTM1-216ENST00000626660 SHROOM3Q8TF72 1996 aa19.5■□□□□ 0.71
SQSTM1-216ENST00000626660 TCRBV21S2A2A0A5A6 115 aa19.5■□□□□ 0.71
SQSTM1-216ENST00000626660 TARSL2A2RTX5 802 aaKnown RBP19.5■□□□□ 0.71
SQSTM1-216ENST00000626660 MFSD11O43934 449 aa19.5■□□□□ 0.71
SQSTM1-216ENST00000626660 MT-CO1P00395 513 aa19.5■□□□□ 0.71
SQSTM1-216ENST00000626660 SRCP12931 536 aa19.5■□□□□ 0.71
SQSTM1-216ENST00000626660 MSNP26038 577 aaKnown RBP19.5■□□□□ 0.71
SQSTM1-216ENST00000626660 SERPINH1P50454 418 aaKnown RBP19.5■□□□□ 0.71
SQSTM1-216ENST00000626660 DNA2P51530 1060 aa19.5■□□□□ 0.71
SQSTM1-216ENST00000626660 ARF5P84085 180 aa19.5■□□□□ 0.71
SQSTM1-216ENST00000626660 ANGPT1Q15389 498 aa19.5■□□□□ 0.71
SQSTM1-216ENST00000626660 DLG2Q15700 870 aa19.5■□□□□ 0.71
SQSTM1-216ENST00000626660 PPP2R5EQ16537 467 aa19.5■□□□□ 0.71
SQSTM1-216ENST00000626660 TAZQ16635 292 aa19.5■□□□□ 0.71
SQSTM1-216ENST00000626660 KAZNQ674X7 775 aa19.5■□□□□ 0.71
SQSTM1-216ENST00000626660 SLC9A4Q6AI14 798 aa19.5■□□□□ 0.71
SQSTM1-216ENST00000626660 LRRC49Q8IUZ0 686 aa19.5■□□□□ 0.71
SQSTM1-216ENST00000626660 ATPAF2Q8N5M1 289 aa19.5■□□□□ 0.71
SQSTM1-216ENST00000626660 CASKIN2Q8WXE0 1202 aa19.5■□□□□ 0.71
SQSTM1-216ENST00000626660 ALG3Q92685 438 aa19.5■□□□□ 0.71
SQSTM1-216ENST00000626660 FBRSQ9HAH7 460 aa19.5■□□□□ 0.71
SQSTM1-216ENST00000626660 BCCIPQ9P287 314 aaKnown RBP eCLIP19.5■□□□□ 0.71
SQSTM1-216ENST00000626660 IPO11Q9UI26 975 aaKnown RBP19.5■□□□□ 0.71
SQSTM1-216ENST00000626660 PIEZO1Q92508 2521 aa19.5■□□□□ 0.71
SQSTM1-216ENST00000626660 hCG_1818297A0A087WSY0 165 aa19.49■□□□□ 0.71
SQSTM1-216ENST00000626660 A0A1W2PQF6 199 aa19.49■□□□□ 0.71
SQSTM1-216ENST00000626660 DDX3YO15523 660 aaKnown RBP19.49■□□□□ 0.71
SQSTM1-216ENST00000626660 KIF5CO60282 957 aa19.49■□□□□ 0.71
SQSTM1-216ENST00000626660 PRAMEF11O60813 436 aa19.49■□□□□ 0.71
SQSTM1-216ENST00000626660 MX2P20592 715 aa19.49■□□□□ 0.71
SQSTM1-216ENST00000626660 NRLP54845 237 aa19.49■□□□□ 0.71
SQSTM1-216ENST00000626660 DYNLT1P63172 113 aa19.49■□□□□ 0.71
SQSTM1-216ENST00000626660 CAMK2GQ13555 558 aaPredicted RBP19.49■□□□□ 0.71
SQSTM1-216ENST00000626660 RPS6KA1Q15418 735 aa19.49■□□□□ 0.71
SQSTM1-216ENST00000626660 NETO2Q8NC67 525 aa19.49■□□□□ 0.71
SQSTM1-216ENST00000626660 HMGB4Q8WW32 186 aa19.49■□□□□ 0.71
SQSTM1-216ENST00000626660 ERLEC1Q96DZ1 483 aa19.49■□□□□ 0.71
SQSTM1-216ENST00000626660 CCDC114Q96M63 670 aa19.49■□□□□ 0.71
SQSTM1-216ENST00000626660 CEP44Q9C0F1 390 aa19.49■□□□□ 0.71
SQSTM1-216ENST00000626660 UBA2Q9UBT2 640 aaPredicted RBP19.49■□□□□ 0.71
SQSTM1-216ENST00000626660 CACNA1HO95180 2353 aa19.48■□□□□ 0.71
SQSTM1-216ENST00000626660 K7ERQ8 282 aa19.48■□□□□ 0.71
SQSTM1-216ENST00000626660 K7ESF4 209 aa19.48■□□□□ 0.71
SQSTM1-216ENST00000626660 CST8O60676 142 aa19.48■□□□□ 0.71
SQSTM1-216ENST00000626660 KRT10P13645 584 aa19.48■□□□□ 0.71
SQSTM1-216ENST00000626660 HOXA6P31267 233 aa19.48■□□□□ 0.71
SQSTM1-216ENST00000626660 RECQLP46063 649 aaPredicted RBP19.48■□□□□ 0.71
SQSTM1-216ENST00000626660 PTPN5P54829 565 aa19.48■□□□□ 0.71
SQSTM1-216ENST00000626660 IL10RBQ08334 325 aa19.48■□□□□ 0.71
SQSTM1-216ENST00000626660 MEI1Q5TIA1 1274 aa19.48■□□□□ 0.71
SQSTM1-216ENST00000626660 CCDC181Q5TID7 509 aa19.48■□□□□ 0.71
SQSTM1-216ENST00000626660 ANO7Q6IWH7 933 aa19.48■□□□□ 0.71
SQSTM1-216ENST00000626660 KIAA1211LQ6NV74 962 aa19.48■□□□□ 0.71
SQSTM1-216ENST00000626660 C22orf39Q6P5X5 142 aa19.48■□□□□ 0.71
SQSTM1-216ENST00000626660 LEKR1Q6ZMV7 388 aa19.48■□□□□ 0.71
SQSTM1-216ENST00000626660 PGBD3Q8N328 593 aa19.48■□□□□ 0.71
SQSTM1-216ENST00000626660 PLD5Q8N7P1 536 aa19.48■□□□□ 0.71
SQSTM1-216ENST00000626660 FRS2Q8WU20 508 aa19.48■□□□□ 0.71
SQSTM1-216ENST00000626660 NSMCE1Q8WV22 266 aa19.48■□□□□ 0.71
SQSTM1-216ENST00000626660 FAM126AQ9BYI3 521 aaPredicted RBP19.48■□□□□ 0.71
SQSTM1-216ENST00000626660 PRSS16Q9NQE7 514 aa19.48■□□□□ 0.71
SQSTM1-216ENST00000626660 EFR3BQ9Y2G0 817 aa19.48■□□□□ 0.71
SQSTM1-216ENST00000626660 FARP1Q9Y4F1 1045 aaPredicted RBP19.48■□□□□ 0.71
SQSTM1-216ENST00000626660 HEY1Q9Y5J3 304 aa19.48■□□□□ 0.71
SQSTM1-216ENST00000626660 J3KR12 359 aa19.47■□□□□ 0.71
SQSTM1-216ENST00000626660 SMAD6O43541 496 aaKnown RBP19.47■□□□□ 0.71
SQSTM1-216ENST00000626660 RNASEH1O60930 286 aaKnown RBP19.47■□□□□ 0.71
SQSTM1-216ENST00000626660 SIN3BO75182 1162 aa19.47■□□□□ 0.71
SQSTM1-216ENST00000626660 PYGMP11217 842 aa19.47■□□□□ 0.71
SQSTM1-216ENST00000626660 TGM2P21980 687 aa19.47■□□□□ 0.71
SQSTM1-216ENST00000626660 PTPN7P35236 360 aa19.47■□□□□ 0.71
SQSTM1-216ENST00000626660 GBE1Q04446 702 aa19.47■□□□□ 0.71
SQSTM1-216ENST00000626660 GALNT2Q10471 571 aa19.47■□□□□ 0.71
SQSTM1-216ENST00000626660 LLGL1Q15334 1064 aa19.47■□□□□ 0.71
SQSTM1-216ENST00000626660 ZNF528Q3MIS6 628 aa19.47■□□□□ 0.71
SQSTM1-216ENST00000626660 INO80DQ53TQ3 878 aaPredicted RBP19.47■□□□□ 0.71
SQSTM1-216ENST00000626660 TSSK4Q6SA08 328 aa19.47■□□□□ 0.71
SQSTM1-216ENST00000626660 Q6ZVU0 165 aa19.47■□□□□ 0.71
SQSTM1-216ENST00000626660 BZW1Q7L1Q6 419 aaKnown RBP19.47■□□□□ 0.71
SQSTM1-216ENST00000626660 TP53INP2Q8IXH6 220 aa19.47■□□□□ 0.71
SQSTM1-216ENST00000626660 MAML2Q8IZL2 1156 aaPredicted RBP19.47■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms