RNA–Protein interactions for RNA: ENST00000623461.3

VCL-206, Transcript of vinculin, humanhuman

TSL 1 (best)

Gene VCL, Length 7,995 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-206ENST00000623461 LRRC4CQ9HCJ2 640 aa9.04□□□□□ -0.96
VCL-206ENST00000623461 NOS1APO75052 506 aaPredicted RBP9.03□□□□□ -0.96
VCL-206ENST00000623461 FBXO21O94952 628 aa9.03□□□□□ -0.96
VCL-206ENST00000623461 LSM3P62310 102 aaKnown RBP9.03□□□□□ -0.96
VCL-206ENST00000623461 PTPN11Q06124 597 aaPredicted RBP9.03□□□□□ -0.96
VCL-206ENST00000623461 MAMLD1Q13495 774 aa9.03□□□□□ -0.96
VCL-206ENST00000623461 TNFAIP8L3Q5GJ75 292 aa9.03□□□□□ -0.96
VCL-206ENST00000623461 MTX3Q5HYI7 312 aa9.03□□□□□ -0.96
VCL-206ENST00000623461 CCNYL2Q5T2Q4 361 aa9.03□□□□□ -0.96
VCL-206ENST00000623461 FAM196AQ6ZSG2 479 aa9.03□□□□□ -0.96
VCL-206ENST00000623461 POLNQ7Z5Q5 900 aa9.03□□□□□ -0.96
VCL-206ENST00000623461 SPPL2AQ8TCT8 520 aa9.03□□□□□ -0.96
VCL-206ENST00000623461 YTHDF1Q9BYJ9 559 aaKnown RBP9.03□□□□□ -0.96
VCL-206ENST00000623461 EPB41L4BQ9H329 900 aa9.03□□□□□ -0.96
VCL-206ENST00000623461 PCDH12Q9NPG4 1184 aa9.03□□□□□ -0.96
VCL-206ENST00000623461 MAGEL2Q9UJ55 1249 aa9.03□□□□□ -0.96
VCL-206ENST00000623461 ZNF222Q9UK12 451 aa9.03□□□□□ -0.96
VCL-206ENST00000623461 SLC22A2O15244 555 aa9.03□□□□□ -0.96
VCL-206ENST00000623461 PLA2G6O60733 806 aa9.03□□□□□ -0.96
VCL-206ENST00000623461 PABPC1P11940 636 aaKnown RBP9.03□□□□□ -0.96
VCL-206ENST00000623461 HARS2P49590 506 aaKnown RBP9.03□□□□□ -0.96
VCL-206ENST00000623461 ACTR3P61158 418 aa9.03□□□□□ -0.96
VCL-206ENST00000623461 ALDH6A1Q02252 535 aaKnown RBP9.03□□□□□ -0.96
VCL-206ENST00000623461 DCAF4L1Q3SXM0 396 aa9.03□□□□□ -0.96
VCL-206ENST00000623461 DENND6AQ8IWF6 608 aa9.03□□□□□ -0.96
VCL-206ENST00000623461 NOL11Q9H8H0 719 aaKnown RBP9.03□□□□□ -0.96
VCL-206ENST00000623461 DDX43Q9NXZ2 648 aaKnown RBP9.03□□□□□ -0.96
VCL-206ENST00000623461 PFDN2Q9UHV9 154 aa9.03□□□□□ -0.96
VCL-206ENST00000623461 M0QX08 132 aa9.03□□□□□ -0.96
VCL-206ENST00000623461 MAP3K6O95382 1288 aa9.03□□□□□ -0.96
VCL-206ENST00000623461 PCSK1P29120 753 aa9.03□□□□□ -0.96
VCL-206ENST00000623461 CLCN2P51788 898 aa9.03□□□□□ -0.96
VCL-206ENST00000623461 ZNF135P52742 658 aaPredicted RBP9.03□□□□□ -0.96
VCL-206ENST00000623461 PHKG1Q16816 387 aa9.03□□□□□ -0.96
VCL-206ENST00000623461 C16orf62Q7Z3J2 963 aa9.03□□□□□ -0.96
VCL-206ENST00000623461 C10orf82Q8WW14 230 aa9.03□□□□□ -0.96
VCL-206ENST00000623461 EBNA1BP2Q99848 306 aaKnown RBP9.03□□□□□ -0.96
VCL-206ENST00000623461 GPR63Q9BZJ6 419 aa9.03□□□□□ -0.96
VCL-206ENST00000623461 MTMR12Q9C0I1 747 aa9.03□□□□□ -0.96
VCL-206ENST00000623461 DPP3Q9NY33 737 aa9.03□□□□□ -0.96
VCL-206ENST00000623461 RICTORQ6R327 1708 aa9.03□□□□□ -0.96
VCL-206ENST00000623461 G3V2T6 193 aa9.03□□□□□ -0.96
VCL-206ENST00000623461 CMPK2Q5EBM0 449 aa9.03□□□□□ -0.96
VCL-206ENST00000623461 PRR23CQ6ZRP0 262 aa9.03□□□□□ -0.96
VCL-206ENST00000623461 FAR1Q8WVX9 515 aa9.03□□□□□ -0.96
VCL-206ENST00000623461 OSBPL10Q9BXB5 764 aa9.03□□□□□ -0.96
VCL-206ENST00000623461 IL22Q9GZX6 179 aa9.03□□□□□ -0.96
VCL-206ENST00000623461 DLG5Q8TDM6 1919 aa9.03□□□□□ -0.96
VCL-206ENST00000623461 CST1P01037 141 aa9.03□□□□□ -0.96
VCL-206ENST00000623461 GSTM5P46439 218 aa9.03□□□□□ -0.96
VCL-206ENST00000623461 IST1P53990 364 aa9.03□□□□□ -0.96
VCL-206ENST00000623461 SLC18A1P54219 525 aa9.03□□□□□ -0.96
VCL-206ENST00000623461 PUDPQ08623 228 aa9.03□□□□□ -0.96
VCL-206ENST00000623461 TRIM32Q13049 653 aa9.03□□□□□ -0.96
VCL-206ENST00000623461 IL31Q6EBC2 164 aa9.03□□□□□ -0.96
VCL-206ENST00000623461 RFWD3Q6PCD5 774 aa9.03□□□□□ -0.96
VCL-206ENST00000623461 HHIPL2Q6UWX4 724 aa9.03□□□□□ -0.96
VCL-206ENST00000623461 BHMTQ93088 406 aa9.03□□□□□ -0.96
VCL-206ENST00000623461 CLPTM1LQ96KA5 538 aa9.03□□□□□ -0.96
VCL-206ENST00000623461 SNX7Q9UNH6 387 aa9.03□□□□□ -0.96
VCL-206ENST00000623461 RXRBP28702 533 aa9.03□□□□□ -0.96
VCL-206ENST00000623461 GRK3P35626 688 aa9.03□□□□□ -0.96
VCL-206ENST00000623461 C10orf107Q8IVU9 208 aa9.03□□□□□ -0.96
VCL-206ENST00000623461 EFCAB3Q8N7B9 438 aa9.03□□□□□ -0.96
VCL-206ENST00000623461 ZSWIM2Q8NEG5 633 aa9.03□□□□□ -0.96
VCL-206ENST00000623461 CERS2Q96G23 380 aa9.03□□□□□ -0.96
VCL-206ENST00000623461 MASTLQ96GX5 879 aa9.03□□□□□ -0.96
VCL-206ENST00000623461 MRPL57Q9BQC6 102 aaKnown RBP9.03□□□□□ -0.96
VCL-206ENST00000623461 SP140LQ9H930 580 aa9.03□□□□□ -0.96
VCL-206ENST00000623461 ERVK-5Q9HDB9 667 aa9.03□□□□□ -0.96
VCL-206ENST00000623461 SLC38A7Q9NVC3 462 aa9.03□□□□□ -0.96
VCL-206ENST00000623461 SMPD3Q9NY59 655 aaPredicted RBP9.03□□□□□ -0.96
VCL-206ENST00000623461 IKZF3Q9UKT9 509 aa9.03□□□□□ -0.96
VCL-206ENST00000623461 SPEF1Q9Y4P9 236 aa9.03□□□□□ -0.96
VCL-206ENST00000623461 NCF1BA6NI72 391 aaPredicted RBP9.02□□□□□ -0.96
VCL-206ENST00000623461 NCF1CA8MVU1 366 aaPredicted RBP9.02□□□□□ -0.96
VCL-206ENST00000623461 PLK4O00444 970 aa9.02□□□□□ -0.96
VCL-206ENST00000623461 MT-CO1P00395 513 aa9.02□□□□□ -0.96
VCL-206ENST00000623461 NR3C2P08235 984 aa9.02□□□□□ -0.96
VCL-206ENST00000623461 NCF1P14598 390 aaPredicted RBP9.02□□□□□ -0.96
VCL-206ENST00000623461 AKAP5P24588 427 aa9.02□□□□□ -0.96
VCL-206ENST00000623461 RBL1P28749 1068 aa9.02□□□□□ -0.96
VCL-206ENST00000623461 AKR1D1P51857 326 aa9.02□□□□□ -0.96
VCL-206ENST00000623461 PSMD5Q16401 504 aa9.02□□□□□ -0.96
VCL-206ENST00000623461 HGSNATQ68CP4 663 aa9.02□□□□□ -0.96
VCL-206ENST00000623461 IRF2BP1Q8IU81 584 aa9.02□□□□□ -0.96
VCL-206ENST00000623461 ZNF317Q96PQ6 595 aaPredicted RBP9.02□□□□□ -0.96
VCL-206ENST00000623461 DNAJC5BQ9UF47 199 aa9.02□□□□□ -0.96
VCL-206ENST00000623461 SSR3Q9UNL2 185 aa9.02□□□□□ -0.96
VCL-206ENST00000623461 TCRBV9S1A1TA0A576 114 aa9.02□□□□□ -0.96
VCL-206ENST00000623461 SIGLEC16A6NMB1 481 aa9.02□□□□□ -0.96
VCL-206ENST00000623461 ENTPD3O75355 529 aa9.02□□□□□ -0.96
VCL-206ENST00000623461 CABYRO75952 493 aa9.02□□□□□ -0.96
VCL-206ENST00000623461 LTA4HP09960 611 aaKnown RBP9.02□□□□□ -0.96
VCL-206ENST00000623461 NAGLUP54802 743 aa9.02□□□□□ -0.96
VCL-206ENST00000623461 Q3C1V9 767 aa9.02□□□□□ -0.96
VCL-206ENST00000623461 SLC9A9Q8IVB4 645 aa9.02□□□□□ -0.96
VCL-206ENST00000623461 SPIRE2Q8WWL2 714 aa9.02□□□□□ -0.96
VCL-206ENST00000623461 APBA2Q99767 749 aa9.02□□□□□ -0.96
VCL-206ENST00000623461 hCG_1818297A0A087WSY0 165 aa9.02□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms