RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 C2orf78A6NCI8 922 aa16.01■□□□□ 0.15
CPSF1-213ENST00000620219 TP73O15350 636 aa16.01■□□□□ 0.15
CPSF1-213ENST00000620219 ADRA1DP25100 572 aa16.01■□□□□ 0.15
CPSF1-213ENST00000620219 DSC2Q02487 901 aa16.01■□□□□ 0.15
CPSF1-213ENST00000620219 ZBTB17Q13105 803 aa16.01■□□□□ 0.15
CPSF1-213ENST00000620219 MS4A13Q5J8X5 152 aa16.01■□□□□ 0.15
CPSF1-213ENST00000620219 GPR158Q5T848 1215 aa16.01■□□□□ 0.15
CPSF1-213ENST00000620219 PM20D1Q6GTS8 502 aa16.01■□□□□ 0.15
CPSF1-213ENST00000620219 PRPF39Q86UA1 669 aaKnown RBP16.01■□□□□ 0.15
CPSF1-213ENST00000620219 CCNYL1Q8N7R7 359 aa16.01■□□□□ 0.15
CPSF1-213ENST00000620219 NAT16Q8N8M0 369 aa16.01■□□□□ 0.15
CPSF1-213ENST00000620219 BCL7CQ8WUZ0 217 aaPredicted RBP16.01■□□□□ 0.15
CPSF1-213ENST00000620219 MFSD3Q96ES6 412 aa16.01■□□□□ 0.15
CPSF1-213ENST00000620219 HAPLN3Q96S86 360 aa16.01■□□□□ 0.15
CPSF1-213ENST00000620219 UGT1A9O60656 530 aa16■□□□□ 0.15
CPSF1-213ENST00000620219 SPRP35270 261 aaPredicted RBP16■□□□□ 0.15
CPSF1-213ENST00000620219 ACVRL1P37023 503 aa16■□□□□ 0.15
CPSF1-213ENST00000620219 NNMTP40261 264 aa16■□□□□ 0.15
CPSF1-213ENST00000620219 CYP4V2Q6ZWL3 525 aaPredicted RBP16■□□□□ 0.15
CPSF1-213ENST00000620219 UGT1A7Q9HAW7 530 aa16■□□□□ 0.15
CPSF1-213ENST00000620219 UGT1A10Q9HAW8 530 aa16■□□□□ 0.15
CPSF1-213ENST00000620219 UGT1A8Q9HAW9 530 aa16■□□□□ 0.15
CPSF1-213ENST00000620219 GLOD4Q9HC38 313 aa16■□□□□ 0.15
CPSF1-213ENST00000620219 ARHGEF38Q9NXL2 777 aa16■□□□□ 0.15
CPSF1-213ENST00000620219 SMG5Q9UPR3 1016 aaKnown RBP16■□□□□ 0.15
CPSF1-213ENST00000620219 SDK1Q7Z5N4 2213 aa16■□□□□ 0.15
CPSF1-213ENST00000620219 RHOQP17081 205 aa16■□□□□ 0.15
CPSF1-213ENST00000620219 MAGEA11P43364 429 aa16■□□□□ 0.15
CPSF1-213ENST00000620219 WNT3AP56704 352 aa16■□□□□ 0.15
CPSF1-213ENST00000620219 CBX2Q14781 532 aaPredicted RBP16■□□□□ 0.15
CPSF1-213ENST00000620219 SLC43A3Q8NBI5 491 aa16■□□□□ 0.15
CPSF1-213ENST00000620219 TCP10LQ8TDR4 215 aa16■□□□□ 0.15
CPSF1-213ENST00000620219 ARNTL2Q8WYA1 636 aa16■□□□□ 0.15
CPSF1-213ENST00000620219 UBE2OQ9C0C9 1292 aaKnown RBP16■□□□□ 0.15
CPSF1-213ENST00000620219 ACSS3Q9H6R3 686 aa16■□□□□ 0.15
CPSF1-213ENST00000620219 SLCO1B3Q9NPD5 702 aa16■□□□□ 0.15
CPSF1-213ENST00000620219 NDFIP2Q9NV92 336 aa16■□□□□ 0.15
CPSF1-213ENST00000620219 CLUHO75153 1309 aa16■□□□□ 0.15
CPSF1-213ENST00000620219 SCN10AQ9Y5Y9 1956 aa16■□□□□ 0.15
CPSF1-213ENST00000620219 MGAT5Q09328 741 aa16■□□□□ 0.15
CPSF1-213ENST00000620219 GALNT3Q14435 633 aa16■□□□□ 0.15
CPSF1-213ENST00000620219 FASTKD1Q53R41 847 aaKnown RBP16■□□□□ 0.15
CPSF1-213ENST00000620219 ANKRD33Q7Z3H0 272 aa16■□□□□ 0.15
CPSF1-213ENST00000620219 ANLNQ9NQW6 1124 aa16■□□□□ 0.15
CPSF1-213ENST00000620219 MTRRQ9UBK8 725 aa16■□□□□ 0.15
CPSF1-213ENST00000620219 MRPS23Q9Y3D9 190 aaKnown RBP16■□□□□ 0.15
CPSF1-213ENST00000620219 HTTP42858 3142 aa16■□□□□ 0.15
CPSF1-213ENST00000620219 MGAMO43451 1857 aa16■□□□□ 0.15
CPSF1-213ENST00000620219 TRAV19A0A0A6YYK7 116 aa16■□□□□ 0.15
CPSF1-213ENST00000620219 HHLA1C9JL84 531 aa16■□□□□ 0.15
CPSF1-213ENST00000620219 SHOX2O60902 331 aaPredicted RBP16■□□□□ 0.15
CPSF1-213ENST00000620219 SEC24AO95486 1093 aa16■□□□□ 0.15
CPSF1-213ENST00000620219 MPP3Q13368 585 aa16■□□□□ 0.15
CPSF1-213ENST00000620219 NXNQ6DKJ4 435 aa16■□□□□ 0.15
CPSF1-213ENST00000620219 KCNMB4Q86W47 210 aa16■□□□□ 0.15
CPSF1-213ENST00000620219 TDRD5Q8NAT2 981 aaKnown RBP16■□□□□ 0.15
CPSF1-213ENST00000620219 POF1BQ8WVV4 589 aa16■□□□□ 0.15
CPSF1-213ENST00000620219 CLSTN3Q9BQT9 956 aa16■□□□□ 0.15
CPSF1-213ENST00000620219 NAT9Q9BTE0 207 aa16■□□□□ 0.15
CPSF1-213ENST00000620219 GPR63Q9BZJ6 419 aa16■□□□□ 0.15
CPSF1-213ENST00000620219 IL23AQ9NPF7 189 aa16■□□□□ 0.15
CPSF1-213ENST00000620219 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP16■□□□□ 0.15
CPSF1-213ENST00000620219 INSL5Q9Y5Q6 135 aa16■□□□□ 0.15
CPSF1-213ENST00000620219 TRIM43BA6NCK2 446 aa15.99■□□□□ 0.15
CPSF1-213ENST00000620219 PGAM1P18669 254 aa15.99■□□□□ 0.15
CPSF1-213ENST00000620219 SLC10A7Q0GE19 358 aa15.99■□□□□ 0.15
CPSF1-213ENST00000620219 RAB41Q5JT25 222 aa15.99■□□□□ 0.15
CPSF1-213ENST00000620219 TRIM43Q96BQ3 446 aaPredicted RBP15.99■□□□□ 0.15
CPSF1-213ENST00000620219 HTATIP2Q9BUP3 242 aa15.99■□□□□ 0.15
CPSF1-213ENST00000620219 POLR1EQ9GZS1 481 aaKnown RBP15.99■□□□□ 0.15
CPSF1-213ENST00000620219 CLIC5Q9NZA1 410 aa15.99■□□□□ 0.15
CPSF1-213ENST00000620219 STK38LQ9Y2H1 464 aa15.99■□□□□ 0.15
CPSF1-213ENST00000620219 KNL1Q8NG31 2342 aa15.99■□□□□ 0.15
CPSF1-213ENST00000620219 TMEM189-UBE2V1I3L0A0 370 aa15.99■□□□□ 0.15
CPSF1-213ENST00000620219 CNGA3Q16281 694 aa15.99■□□□□ 0.15
CPSF1-213ENST00000620219 TMC5Q6UXY8 1006 aa15.99■□□□□ 0.15
CPSF1-213ENST00000620219 CFHR5Q9BXR6 569 aa15.99■□□□□ 0.15
CPSF1-213ENST00000620219 OSBPL2Q9H1P3 480 aa15.99■□□□□ 0.15
CPSF1-213ENST00000620219 COCHO43405 550 aa15.99■□□□□ 0.15
CPSF1-213ENST00000620219 RFPL2O75678 378 aa15.99■□□□□ 0.15
CPSF1-213ENST00000620219 CNPP09543 421 aaKnown RBP15.99■□□□□ 0.15
CPSF1-213ENST00000620219 SKIV2LQ15477 1246 aaKnown RBP15.99■□□□□ 0.15
CPSF1-213ENST00000620219 TCTN1Q2MV58 587 aa15.99■□□□□ 0.15
CPSF1-213ENST00000620219 PIK3R6Q5UE93 754 aa15.99■□□□□ 0.15
CPSF1-213ENST00000620219 C16orf46Q6P387 395 aa15.99■□□□□ 0.15
CPSF1-213ENST00000620219 IGSF8Q969P0 613 aa15.99■□□□□ 0.15
CPSF1-213ENST00000620219 SGSM3Q96HU1 749 aa15.99■□□□□ 0.15
CPSF1-213ENST00000620219 TBX21Q9UL17 535 aa15.99■□□□□ 0.15
CPSF1-213ENST00000620219 CDK16Q00536 496 aa15.98■□□□□ 0.15
CPSF1-213ENST00000620219 MPP2Q14168 576 aa15.98■□□□□ 0.15
CPSF1-213ENST00000620219 ZRSR2Q15696 482 aaKnown RBP15.98■□□□□ 0.15
CPSF1-213ENST00000620219 TPGS2Q68CL5 300 aa15.98■□□□□ 0.15
CPSF1-213ENST00000620219 ZNF470Q6ECI4 717 aa15.98■□□□□ 0.15
CPSF1-213ENST00000620219 ZNF449Q6P9G9 518 aa15.98■□□□□ 0.15
CPSF1-213ENST00000620219 TRABD2AQ86V40 505 aa15.98■□□□□ 0.15
CPSF1-213ENST00000620219 CACUL1Q86Y37 369 aa15.98■□□□□ 0.15
CPSF1-213ENST00000620219 PPP1R36Q96LQ0 422 aa15.98■□□□□ 0.15
CPSF1-213ENST00000620219 TEKT5Q96M29 485 aa15.98■□□□□ 0.15
CPSF1-213ENST00000620219 TASP1Q9H6P5 420 aa15.98■□□□□ 0.15
CPSF1-213ENST00000620219 NPHS2Q9NP85 383 aa15.98■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms