RNA–Protein interactions for RNA: ENST00000600310.5

UPF1-209, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 750 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-209ENST00000600310 TP53INP2Q8IXH6 220 aa19.75■□□□□ 0.75
UPF1-209ENST00000600310 ZNF366Q8N895 744 aa19.75■□□□□ 0.75
UPF1-209ENST00000600310 ATP11CQ8NB49 1132 aa19.75■□□□□ 0.75
UPF1-209ENST00000600310 NETO2Q8NC67 525 aa19.75■□□□□ 0.75
UPF1-209ENST00000600310 TRAF3IP1Q8TDR0 691 aaPredicted RBP19.75■□□□□ 0.75
UPF1-209ENST00000600310 ALG3Q92685 438 aa19.75■□□□□ 0.75
UPF1-209ENST00000600310 HES6Q96HZ4 224 aa19.75■□□□□ 0.75
UPF1-209ENST00000600310 ALS2CR12Q96Q35 445 aa19.75■□□□□ 0.75
UPF1-209ENST00000600310 KCNH6Q9H252 994 aa19.75■□□□□ 0.75
UPF1-209ENST00000600310 PRSS16Q9NQE7 514 aa19.75■□□□□ 0.75
UPF1-209ENST00000600310 WDFY4Q6ZS81 3184 aa19.75■□□□□ 0.75
UPF1-209ENST00000600310 ZNF318Q5VUA4 2279 aa19.74■□□□□ 0.75
UPF1-209ENST00000600310 TCRBV21S2A2A0A5A6 115 aa19.74■□□□□ 0.75
UPF1-209ENST00000600310 TARSL2A2RTX5 802 aaKnown RBP19.74■□□□□ 0.75
UPF1-209ENST00000600310 K7ERQ8 282 aa19.74■□□□□ 0.75
UPF1-209ENST00000600310 DFFAO00273 331 aa19.74■□□□□ 0.75
UPF1-209ENST00000600310 APOL1O14791 398 aa19.74■□□□□ 0.75
UPF1-209ENST00000600310 DDX3YO15523 660 aaKnown RBP19.74■□□□□ 0.75
UPF1-209ENST00000600310 ALDH1A2O94788 518 aa19.74■□□□□ 0.75
UPF1-209ENST00000600310 COPS2P61201 443 aa19.74■□□□□ 0.75
UPF1-209ENST00000600310 DLG2Q15700 870 aa19.74■□□□□ 0.75
UPF1-209ENST00000600310 PPP2R5EQ16537 467 aa19.74■□□□□ 0.75
UPF1-209ENST00000600310 TFDP3Q5H9I0 405 aa19.74■□□□□ 0.75
UPF1-209ENST00000600310 RASSF3Q86WH2 238 aa19.74■□□□□ 0.75
UPF1-209ENST00000600310 UBL4BQ8N7F7 174 aa19.74■□□□□ 0.75
UPF1-209ENST00000600310 TRIM58Q8NG06 486 aa19.74■□□□□ 0.75
UPF1-209ENST00000600310 PTPRN2Q92932 1015 aa19.74■□□□□ 0.75
UPF1-209ENST00000600310 MTG2Q9H4K7 406 aa19.74■□□□□ 0.75
UPF1-209ENST00000600310 PDFQ9HBH1 243 aa19.74■□□□□ 0.75
UPF1-209ENST00000600310 PYCARDQ9ULZ3 195 aa19.74■□□□□ 0.75
UPF1-209ENST00000600310 PACSIN2Q9UNF0 486 aaPredicted RBP19.74■□□□□ 0.75
UPF1-209ENST00000600310 ACTL7AQ9Y615 435 aa19.74■□□□□ 0.75
UPF1-209ENST00000600310 MUC22E2RYF6 1773 aaPredicted RBP19.74■□□□□ 0.75
UPF1-209ENST00000600310 PIEZO1Q92508 2521 aa19.74■□□□□ 0.75
UPF1-209ENST00000600310 CHD5Q8TDI0 1954 aa19.74■□□□□ 0.75
UPF1-209ENST00000600310 EDDM13A0A1B0GTR0 161 aa19.73■□□□□ 0.75
UPF1-209ENST00000600310 SMAD6O43541 496 aaKnown RBP19.73■□□□□ 0.75
UPF1-209ENST00000600310 MFSD11O43934 449 aa19.73■□□□□ 0.75
UPF1-209ENST00000600310 PRAMEF11O60813 436 aa19.73■□□□□ 0.75
UPF1-209ENST00000600310 ZFXP17010 805 aaPredicted RBP19.73■□□□□ 0.75
UPF1-209ENST00000600310 TFDP2Q14188 446 aa19.73■□□□□ 0.75
UPF1-209ENST00000600310 ZNF528Q3MIS6 628 aa19.73■□□□□ 0.75
UPF1-209ENST00000600310 ACCSLQ4AC99 568 aa19.73■□□□□ 0.75
UPF1-209ENST00000600310 C9orf64Q5T6V5 341 aa19.73■□□□□ 0.75
UPF1-209ENST00000600310 RFX6Q8HWS3 928 aa19.73■□□□□ 0.75
UPF1-209ENST00000600310 LRRC49Q8IUZ0 686 aa19.73■□□□□ 0.75
UPF1-209ENST00000600310 CCDC50Q8IVM0 306 aa19.73■□□□□ 0.75
UPF1-209ENST00000600310 PLD5Q8N7P1 536 aa19.73■□□□□ 0.75
UPF1-209ENST00000600310 OR2T3Q8NH03 318 aa19.73■□□□□ 0.75
UPF1-209ENST00000600310 CASKIN2Q8WXE0 1202 aa19.73■□□□□ 0.75
UPF1-209ENST00000600310 NELL1Q92832 810 aa19.73■□□□□ 0.75
UPF1-209ENST00000600310 FAM126AQ9BYI3 521 aaPredicted RBP19.73■□□□□ 0.75
UPF1-209ENST00000600310 CEP44Q9C0F1 390 aa19.73■□□□□ 0.75
UPF1-209ENST00000600310 FBRSQ9HAH7 460 aa19.73■□□□□ 0.75
UPF1-209ENST00000600310 TRMT1Q9NXH9 659 aaKnown RBP19.73■□□□□ 0.75
UPF1-209ENST00000600310 EBF1Q9UH73 591 aa19.73■□□□□ 0.75
UPF1-209ENST00000600310 IPO11Q9UI26 975 aaKnown RBP19.73■□□□□ 0.75
UPF1-209ENST00000600310 CACNA1IQ9P0X4 2223 aa19.72■□□□□ 0.75
UPF1-209ENST00000600310 hCG_1818297A0A087WSY0 165 aa19.72■□□□□ 0.75
UPF1-209ENST00000600310 CCDC163A0A0D9SF12 145 aa19.72■□□□□ 0.75
UPF1-209ENST00000600310 J3KR12 359 aa19.72■□□□□ 0.75
UPF1-209ENST00000600310 ZBTB24O43167 697 aaPredicted RBP19.72■□□□□ 0.75
UPF1-209ENST00000600310 SIN3BO75182 1162 aa19.72■□□□□ 0.75
UPF1-209ENST00000600310 SP9P0CG40 484 aa19.72■□□□□ 0.75
UPF1-209ENST00000600310 C7P10643 843 aa19.72■□□□□ 0.75
UPF1-209ENST00000600310 KRT10P13645 584 aa19.72■□□□□ 0.75
UPF1-209ENST00000600310 VAV1P15498 845 aa19.72■□□□□ 0.75
UPF1-209ENST00000600310 GABRG2P18507 467 aa19.72■□□□□ 0.75
UPF1-209ENST00000600310 GBE1Q04446 702 aa19.72■□□□□ 0.75
UPF1-209ENST00000600310 IL10RBQ08334 325 aa19.72■□□□□ 0.75
UPF1-209ENST00000600310 GALNT2Q10471 571 aa19.72■□□□□ 0.75
UPF1-209ENST00000600310 INO80DQ53TQ3 878 aaPredicted RBP19.72■□□□□ 0.75
UPF1-209ENST00000600310 MEI1Q5TIA1 1274 aa19.72■□□□□ 0.75
UPF1-209ENST00000600310 ANO7Q6IWH7 933 aa19.72■□□□□ 0.75
UPF1-209ENST00000600310 ARHGAP36Q6ZRI8 547 aa19.72■□□□□ 0.75
UPF1-209ENST00000600310 METTL3Q86U44 580 aaKnown RBP19.72■□□□□ 0.75
UPF1-209ENST00000600310 PRSS33Q8NF86 280 aa19.72■□□□□ 0.75
UPF1-209ENST00000600310 ISG20Q96AZ6 181 aaKnown RBP19.72■□□□□ 0.75
UPF1-209ENST00000600310 SP110Q9HB58 689 aa19.72■□□□□ 0.75
UPF1-209ENST00000600310 EFR3BQ9Y2G0 817 aa19.72■□□□□ 0.75
UPF1-209ENST00000600310 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP19.72■□□□□ 0.75
UPF1-209ENST00000600310 CST8O60676 142 aa19.71■□□□□ 0.75
UPF1-209ENST00000600310 ZNF821O75541 412 aaPredicted RBP19.71■□□□□ 0.75
UPF1-209ENST00000600310 PYGMP11217 842 aa19.71■□□□□ 0.75
UPF1-209ENST00000600310 PTPN7P35236 360 aa19.71■□□□□ 0.75
UPF1-209ENST00000600310 COPAP53621 1224 aa19.71■□□□□ 0.75
UPF1-209ENST00000600310 NRLP54845 237 aa19.71■□□□□ 0.75
UPF1-209ENST00000600310 DMWDQ09019 674 aa19.71■□□□□ 0.75
UPF1-209ENST00000600310 TCF15Q12870 199 aa19.71■□□□□ 0.75
UPF1-209ENST00000600310 SLC10A2Q12908 348 aaPredicted RBP19.71■□□□□ 0.75
UPF1-209ENST00000600310 LLGL1Q15334 1064 aa19.71■□□□□ 0.75
UPF1-209ENST00000600310 KAZNQ674X7 775 aa19.71■□□□□ 0.75
UPF1-209ENST00000600310 C22orf39Q6P5X5 142 aa19.71■□□□□ 0.75
UPF1-209ENST00000600310 LEKR1Q6ZMV7 388 aa19.71■□□□□ 0.75
UPF1-209ENST00000600310 Q6ZVU0 165 aa19.71■□□□□ 0.75
UPF1-209ENST00000600310 ALYREFQ86V81 257 aaKnown RBP19.71■□□□□ 0.75
UPF1-209ENST00000600310 TMPRSS6Q8IU80 811 aa19.71■□□□□ 0.75
UPF1-209ENST00000600310 PCDH20Q8N6Y1 951 aaKnown RBP19.71■□□□□ 0.75
UPF1-209ENST00000600310 MDGA1Q8NFP4 955 aa19.71■□□□□ 0.75
UPF1-209ENST00000600310 ERLEC1Q96DZ1 483 aa19.71■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms