RNA–Protein interactions for RNA: ENST00000599716.5

SHKBP1-220, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-220ENST00000599716 THEGLP0DJG4 465 aa8.88□□□□□ -0.99
SHKBP1-220ENST00000599716 GIMD1P0DJR0 217 aa8.88□□□□□ -0.99
SHKBP1-220ENST00000599716 ZNF18P17022 549 aa8.88□□□□□ -0.99
SHKBP1-220ENST00000599716 TFE3P19532 575 aaPredicted RBP8.88□□□□□ -0.99
SHKBP1-220ENST00000599716 BMP6P22004 513 aa8.88□□□□□ -0.99
SHKBP1-220ENST00000599716 DGKAP23743 735 aa8.88□□□□□ -0.99
SHKBP1-220ENST00000599716 RRM1P23921 792 aa8.88□□□□□ -0.99
SHKBP1-220ENST00000599716 RPL34P49207 117 aaKnown RBP8.88□□□□□ -0.99
SHKBP1-220ENST00000599716 KCNH2Q12809 1159 aa8.88□□□□□ -0.99
SHKBP1-220ENST00000599716 NME3Q13232 169 aa8.88□□□□□ -0.99
SHKBP1-220ENST00000599716 DRAP1Q14919 205 aaPredicted RBP8.88□□□□□ -0.99
SHKBP1-220ENST00000599716 ARHGAP44Q17R89 818 aa8.88□□□□□ -0.99
SHKBP1-220ENST00000599716 TBC1D25Q3MII6 688 aa8.88□□□□□ -0.99
SHKBP1-220ENST00000599716 SLC45A4Q5BKX6 768 aa8.88□□□□□ -0.99
SHKBP1-220ENST00000599716 PIP5KL1Q5T9C9 394 aa8.88□□□□□ -0.99
SHKBP1-220ENST00000599716 ARHGAP40Q5TG30 622 aa8.88□□□□□ -0.99
SHKBP1-220ENST00000599716 SEL1L3Q68CR1 1132 aa8.88□□□□□ -0.99
SHKBP1-220ENST00000599716 LINGO4Q6UY18 593 aa8.88□□□□□ -0.99
SHKBP1-220ENST00000599716 SLC22A18ASQ8N1D0 253 aa8.88□□□□□ -0.99
SHKBP1-220ENST00000599716 DCBLD1Q8N8Z6 715 aa8.88□□□□□ -0.99
SHKBP1-220ENST00000599716 ZNF557Q8N988 423 aaPredicted RBP8.88□□□□□ -0.99
SHKBP1-220ENST00000599716 KDM1BQ8NB78 822 aa8.88□□□□□ -0.99
SHKBP1-220ENST00000599716 EHBP1Q8NDI1 1231 aa8.88□□□□□ -0.99
SHKBP1-220ENST00000599716 SNIP1Q8TAD8 396 aaKnown RBP8.88□□□□□ -0.99
SHKBP1-220ENST00000599716 GRIN3AQ8TCU5 1115 aa8.88□□□□□ -0.99
SHKBP1-220ENST00000599716 OR8D1Q8WZ84 308 aa8.88□□□□□ -0.99
SHKBP1-220ENST00000599716 BAP1Q92560 729 aa8.88□□□□□ -0.99
SHKBP1-220ENST00000599716 FGF11Q92914 225 aa8.88□□□□□ -0.99
SHKBP1-220ENST00000599716 SMARCE1Q969G3 411 aa8.88□□□□□ -0.99
SHKBP1-220ENST00000599716 KLHDC7BQ96G42 594 aa8.88□□□□□ -0.99
SHKBP1-220ENST00000599716 SPAG5Q96R06 1193 aa8.88□□□□□ -0.99
SHKBP1-220ENST00000599716 LGMNQ99538 433 aa8.88□□□□□ -0.99
SHKBP1-220ENST00000599716 CRACR2AQ9BSW2 395 aa8.88□□□□□ -0.99
SHKBP1-220ENST00000599716 SLC4A5Q9BY07 1137 aa8.88□□□□□ -0.99
SHKBP1-220ENST00000599716 NRSN2Q9GZP1 204 aa8.88□□□□□ -0.99
SHKBP1-220ENST00000599716 SCAND2PQ9GZW5 306 aaPredicted RBP8.88□□□□□ -0.99
SHKBP1-220ENST00000599716 SIK2Q9H0K1 926 aa8.88□□□□□ -0.99
SHKBP1-220ENST00000599716 TNKS2Q9H2K2 1166 aa8.88□□□□□ -0.99
SHKBP1-220ENST00000599716 POPDC2Q9HBU9 364 aa8.88□□□□□ -0.99
SHKBP1-220ENST00000599716 METTL14Q9HCE5 456 aaKnown RBP8.88□□□□□ -0.99
SHKBP1-220ENST00000599716 UBE2TQ9NPD8 197 aaPredicted RBP8.88□□□□□ -0.99
SHKBP1-220ENST00000599716 ANLNQ9NQW6 1124 aa8.88□□□□□ -0.99
SHKBP1-220ENST00000599716 RMND1Q9NWS8 449 aa8.88□□□□□ -0.99
SHKBP1-220ENST00000599716 VPS28Q9UK41 221 aa8.88□□□□□ -0.99
SHKBP1-220ENST00000599716 MAN1B1Q9UKM7 699 aa8.88□□□□□ -0.99
SHKBP1-220ENST00000599716 PPM1HQ9ULR3 514 aa8.88□□□□□ -0.99
SHKBP1-220ENST00000599716 ZFR2Q9UPR6 939 aaKnown RBP8.88□□□□□ -0.99
SHKBP1-220ENST00000599716 CTNND2Q9UQB3 1225 aa8.88□□□□□ -0.99
SHKBP1-220ENST00000599716 ACTL7AQ9Y615 435 aa8.88□□□□□ -0.99
SHKBP1-220ENST00000599716 HS3ST4Q9Y661 456 aa8.88□□□□□ -0.99
SHKBP1-220ENST00000599716 ADGRG4Q8IZF6 3080 aa8.88□□□□□ -0.99
SHKBP1-220ENST00000599716 LY6G6EA0A0G2JKS1 128 aa8.87□□□□□ -0.99
SHKBP1-220ENST00000599716 A0A1W2PNU3 283 aaPredicted RBP8.87□□□□□ -0.99
SHKBP1-220ENST00000599716 TCAF2A6NFQ2 919 aa8.87□□□□□ -0.99
SHKBP1-220ENST00000599716 I6L893 689 aaPredicted RBP8.87□□□□□ -0.99
SHKBP1-220ENST00000599716 KPNA3O00505 521 aaPredicted RBP8.87□□□□□ -0.99
SHKBP1-220ENST00000599716 RAD51BO15315 384 aa8.87□□□□□ -0.99
SHKBP1-220ENST00000599716 ATMINO43313 823 aaPredicted RBP8.87□□□□□ -0.99
SHKBP1-220ENST00000599716 USP12O75317 370 aa8.87□□□□□ -0.99
SHKBP1-220ENST00000599716 SRCP12931 536 aa8.87□□□□□ -0.99
SHKBP1-220ENST00000599716 ACP1P24666 158 aa8.87□□□□□ -0.99
SHKBP1-220ENST00000599716 GNA15P30679 374 aa8.87□□□□□ -0.99
SHKBP1-220ENST00000599716 NNMTP40261 264 aa8.87□□□□□ -0.99
SHKBP1-220ENST00000599716 USP8P40818 1118 aa8.87□□□□□ -0.99
SHKBP1-220ENST00000599716 YWHAZP63104 245 aaKnown RBP8.87□□□□□ -0.99
SHKBP1-220ENST00000599716 GABREP78334 506 aa8.87□□□□□ -0.99
SHKBP1-220ENST00000599716 LRRC63Q05C16 580 aa8.87□□□□□ -0.99
SHKBP1-220ENST00000599716 KCNMA1Q12791 1236 aa8.87□□□□□ -0.99
SHKBP1-220ENST00000599716 PDCLQ13371 301 aa8.87□□□□□ -0.99
SHKBP1-220ENST00000599716 NNTQ13423 1086 aa8.87□□□□□ -0.99
SHKBP1-220ENST00000599716 EIF4EBP2Q13542 120 aaPredicted RBP8.87□□□□□ -0.99
SHKBP1-220ENST00000599716 AUHQ13825 339 aaKnown RBP8.87□□□□□ -0.99
SHKBP1-220ENST00000599716 LY6DQ14210 128 aa8.87□□□□□ -0.99
SHKBP1-220ENST00000599716 STILQ15468 1287 aa8.87□□□□□ -0.99
SHKBP1-220ENST00000599716 ALFQ53S48 1182 aa8.87□□□□□ -0.99
SHKBP1-220ENST00000599716 TPRG1LQ5T0D9 272 aa8.87□□□□□ -0.99
SHKBP1-220ENST00000599716 OTUD1Q5VV17 481 aaPredicted RBP8.87□□□□□ -0.99
SHKBP1-220ENST00000599716 TTI2Q6NXR4 508 aa8.87□□□□□ -0.99
SHKBP1-220ENST00000599716 FAM183BPQ6ZVS7 135 aa8.87□□□□□ -0.99
SHKBP1-220ENST00000599716 WDTC1Q8N5D0 677 aa8.87□□□□□ -0.99
SHKBP1-220ENST00000599716 SH2D3CQ8N5H7 860 aa8.87□□□□□ -0.99
SHKBP1-220ENST00000599716 ATP6V0D2Q8N8Y2 350 aa8.87□□□□□ -0.99
SHKBP1-220ENST00000599716 TMEM145Q8NBT3 493 aa8.87□□□□□ -0.99
SHKBP1-220ENST00000599716 NELFBQ8WX92 580 aa8.87□□□□□ -0.99
SHKBP1-220ENST00000599716 ZNF606Q8WXB4 792 aa8.87□□□□□ -0.99
SHKBP1-220ENST00000599716 FAM131CQ96AQ9 280 aa8.87□□□□□ -0.99
SHKBP1-220ENST00000599716 MED8Q96G25 268 aa8.87□□□□□ -0.99
SHKBP1-220ENST00000599716 CPXM1Q96SM3 734 aa8.87□□□□□ -0.99
SHKBP1-220ENST00000599716 PSMB7Q99436 277 aa8.87□□□□□ -0.99
SHKBP1-220ENST00000599716 FEM1AQ9BSK4 669 aa8.87□□□□□ -0.99
SHKBP1-220ENST00000599716 ERVMER34-1Q9H9K5 563 aa8.87□□□□□ -0.99
SHKBP1-220ENST00000599716 PLCB1Q9NQ66 1216 aa8.87□□□□□ -0.99
SHKBP1-220ENST00000599716 SLC25A13Q9UJS0 675 aa8.87□□□□□ -0.99
SHKBP1-220ENST00000599716 AJAP1Q9UKB5 411 aaPredicted RBP8.87□□□□□ -0.99
SHKBP1-220ENST00000599716 OR51B4Q9Y5P0 310 aa8.87□□□□□ -0.99
SHKBP1-220ENST00000599716 U3KQA8 63 aa8.87□□□□□ -0.99
SHKBP1-220ENST00000599716 RP1P56715 2156 aa8.87□□□□□ -0.99
SHKBP1-220ENST00000599716 COL27A1Q8IZC6 1860 aaPredicted RBP8.87□□□□□ -0.99
SHKBP1-220ENST00000599716 TRPM6Q9BX84 2022 aa8.87□□□□□ -0.99
SHKBP1-220ENST00000599716 CRYBG3Q68DQ2 2970 aa8.86□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms