RNA–Protein interactions for RNA: ENST00000599538.5

VRK3-217, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VRK3, Length 2,126 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-217ENST00000599538 KCNK13Q9HB14 408 aa14.73□□□□□ -0.05
VRK3-217ENST00000599538 TLR8Q9NR97 1041 aaKnown RBP14.73□□□□□ -0.05
VRK3-217ENST00000599538 SOX13Q9UN79 622 aa14.73□□□□□ -0.05
VRK3-217ENST00000599538 RTN3O95197 1032 aaPredicted RBP14.72□□□□□ -0.05
VRK3-217ENST00000599538 CXCL10P02778 98 aa14.72□□□□□ -0.05
VRK3-217ENST00000599538 MNX1P50219 401 aaPredicted RBP14.72□□□□□ -0.05
VRK3-217ENST00000599538 KCNJ2P63252 427 aa14.72□□□□□ -0.05
VRK3-217ENST00000599538 PDE1BQ01064 536 aa14.72□□□□□ -0.05
VRK3-217ENST00000599538 BST1Q10588 318 aa14.72□□□□□ -0.05
VRK3-217ENST00000599538 DLG2Q15700 870 aa14.72□□□□□ -0.05
VRK3-217ENST00000599538 CHI3L2Q15782 390 aa14.72□□□□□ -0.05
VRK3-217ENST00000599538 TTC31Q49AM3 519 aaPredicted RBP14.72□□□□□ -0.05
VRK3-217ENST00000599538 NADSYN1Q6IA69 706 aa14.72□□□□□ -0.05
VRK3-217ENST00000599538 ANKS3Q6ZW76 656 aa14.72□□□□□ -0.05
VRK3-217ENST00000599538 KCNMB4Q86W47 210 aa14.72□□□□□ -0.05
VRK3-217ENST00000599538 UMODL1-AS1Q8N2C9 162 aa14.72□□□□□ -0.05
VRK3-217ENST00000599538 DCLK2Q8N568 766 aa14.72□□□□□ -0.05
VRK3-217ENST00000599538 SPATA17Q96L03 361 aa14.72□□□□□ -0.05
VRK3-217ENST00000599538 TBL1YQ9BQ87 522 aa14.72□□□□□ -0.05
VRK3-217ENST00000599538 PLCD4Q9BRC7 762 aa14.72□□□□□ -0.05
VRK3-217ENST00000599538 ZYG11BQ9C0D3 744 aa14.72□□□□□ -0.05
VRK3-217ENST00000599538 CAB39LQ9H9S4 337 aa14.72□□□□□ -0.05
VRK3-217ENST00000599538 C20orf96Q9NUD7 363 aaPredicted RBP14.72□□□□□ -0.05
VRK3-217ENST00000599538 SIRPGQ9P1W8 387 aa14.72□□□□□ -0.05
VRK3-217ENST00000599538 ZNF212Q9UDV6 495 aa14.72□□□□□ -0.05
VRK3-217ENST00000599538 OGDHLQ9ULD0 1010 aa14.72□□□□□ -0.05
VRK3-217ENST00000599538 MICAL3Q7RTP6 2002 aa14.72□□□□□ -0.05
VRK3-217ENST00000599538 IGLV3-10A0A075B6K4 115 aa14.72□□□□□ -0.05
VRK3-217ENST00000599538 A0A0G2JND7 137 aa14.72□□□□□ -0.05
VRK3-217ENST00000599538 SLC38A8A6NNN8 435 aa14.72□□□□□ -0.05
VRK3-217ENST00000599538 TLR5O60602 858 aa14.72□□□□□ -0.05
VRK3-217ENST00000599538 IGLV3-27P01718 113 aa14.72□□□□□ -0.05
VRK3-217ENST00000599538 SLC2A3P11169 496 aa14.72□□□□□ -0.05
VRK3-217ENST00000599538 CCL5P13501 91 aa14.72□□□□□ -0.05
VRK3-217ENST00000599538 OR1D2P34982 312 aa14.72□□□□□ -0.05
VRK3-217ENST00000599538 ADRA1AP35348 466 aa14.72□□□□□ -0.05
VRK3-217ENST00000599538 TLE2Q04725 743 aa14.72□□□□□ -0.05
VRK3-217ENST00000599538 SLC10A7Q0GE19 358 aa14.72□□□□□ -0.05
VRK3-217ENST00000599538 ARHGEF6Q15052 776 aa14.72□□□□□ -0.05
VRK3-217ENST00000599538 TRIM60Q495X7 471 aa14.72□□□□□ -0.05
VRK3-217ENST00000599538 N4BP2L1Q5TBK1 243 aaPredicted RBP14.72□□□□□ -0.05
VRK3-217ENST00000599538 FSTL4Q6MZW2 842 aa14.72□□□□□ -0.05
VRK3-217ENST00000599538 NLRP9Q7RTR0 991 aa14.72□□□□□ -0.05
VRK3-217ENST00000599538 TBC1D1Q86TI0 1168 aaPredicted RBP14.72□□□□□ -0.05
VRK3-217ENST00000599538 NUDCD3Q8IVD9 361 aa14.72□□□□□ -0.05
VRK3-217ENST00000599538 KIF2BQ8N4N8 673 aa14.72□□□□□ -0.05
VRK3-217ENST00000599538 PSMG2Q969U7 264 aa14.72□□□□□ -0.05
VRK3-217ENST00000599538 BTN2A3PQ96KV6 586 aa14.72□□□□□ -0.05
VRK3-217ENST00000599538 MRGPRX2Q96LB1 330 aa14.72□□□□□ -0.05
VRK3-217ENST00000599538 RBBP8Q99708 897 aa14.72□□□□□ -0.05
VRK3-217ENST00000599538 CPNE1Q99829 537 aa14.72□□□□□ -0.05
VRK3-217ENST00000599538 TMEM175Q9BSA9 504 aa14.72□□□□□ -0.05
VRK3-217ENST00000599538 IARS2Q9NSE4 1012 aaKnown RBP14.72□□□□□ -0.05
VRK3-217ENST00000599538 TMEM248Q9NWD8 314 aa14.72□□□□□ -0.05
VRK3-217ENST00000599538 TXNDC16Q9P2K2 825 aa14.72□□□□□ -0.05
VRK3-217ENST00000599538 MTO1Q9Y2Z2 717 aaKnown RBP14.72□□□□□ -0.05
VRK3-217ENST00000599538 AAR2Q9Y312 384 aaKnown RBP14.72□□□□□ -0.05
VRK3-217ENST00000599538 TANC1Q9C0D5 1861 aa14.72□□□□□ -0.05
VRK3-217ENST00000599538 EFEMP2O95967 443 aa14.71□□□□□ -0.05
VRK3-217ENST00000599538 BPGMP07738 259 aa14.71□□□□□ -0.05
VRK3-217ENST00000599538 ZDHHC11BP0C7U3 371 aa14.71□□□□□ -0.05
VRK3-217ENST00000599538 RHOQP17081 205 aa14.71□□□□□ -0.05
VRK3-217ENST00000599538 TMPRSS15P98073 1019 aa14.71□□□□□ -0.05
VRK3-217ENST00000599538 NAB1Q13506 487 aa14.71□□□□□ -0.05
VRK3-217ENST00000599538 PCSK7Q16549 785 aa14.71□□□□□ -0.05
VRK3-217ENST00000599538 SLC39A5Q6ZMH5 540 aa14.71□□□□□ -0.05
VRK3-217ENST00000599538 PLD6Q8N2A8 252 aaKnown RBP14.71□□□□□ -0.05
VRK3-217ENST00000599538 LRRC43Q8N309 656 aa14.71□□□□□ -0.05
VRK3-217ENST00000599538 ATP6V0D2Q8N8Y2 350 aa14.71□□□□□ -0.05
VRK3-217ENST00000599538 E2F7Q96AV8 911 aa14.71□□□□□ -0.05
VRK3-217ENST00000599538 LRRC37BQ96QE4 947 aa14.71□□□□□ -0.05
VRK3-217ENST00000599538 KIFC1Q9BW19 673 aa14.71□□□□□ -0.05
VRK3-217ENST00000599538 MRPL9Q9BYD2 267 aaKnown RBP14.71□□□□□ -0.05
VRK3-217ENST00000599538 CWH43Q9H720 699 aa14.71□□□□□ -0.05
VRK3-217ENST00000599538 SNX15Q9NRS6 342 aa14.71□□□□□ -0.05
VRK3-217ENST00000599538 TMEM216Q9P0N5 145 aa14.71□□□□□ -0.05
VRK3-217ENST00000599538 SLC2A6Q9UGQ3 507 aa14.71□□□□□ -0.05
VRK3-217ENST00000599538 KLF11O14901 512 aa14.71□□□□□ -0.06
VRK3-217ENST00000599538 HOXA2O43364 376 aa14.71□□□□□ -0.06
VRK3-217ENST00000599538 GJB3O75712 270 aa14.71□□□□□ -0.06
VRK3-217ENST00000599538 DLDP09622 509 aaKnown RBP14.71□□□□□ -0.06
VRK3-217ENST00000599538 TYK2P29597 1187 aa14.71□□□□□ -0.06
VRK3-217ENST00000599538 RPL10AP62906 217 aaKnown RBP14.71□□□□□ -0.06
VRK3-217ENST00000599538 ELAVL2Q12926 359 aaKnown RBP14.71□□□□□ -0.06
VRK3-217ENST00000599538 GRTP1Q5TC63 336 aa14.71□□□□□ -0.06
VRK3-217ENST00000599538 FYB2Q5VWT5 728 aa14.71□□□□□ -0.06
VRK3-217ENST00000599538 TIGD7Q6NT04 549 aaPredicted RBP14.71□□□□□ -0.06
VRK3-217ENST00000599538 ESRP1Q6NXG1 681 aaKnown RBP14.71□□□□□ -0.06
VRK3-217ENST00000599538 ATG14Q6ZNE5 492 aa14.71□□□□□ -0.06
VRK3-217ENST00000599538 GBP7Q8N8V2 638 aaPredicted RBP14.71□□□□□ -0.06
VRK3-217ENST00000599538 PABPC5Q96DU9 382 aaKnown RBP14.71□□□□□ -0.06
VRK3-217ENST00000599538 PRR11Q96HE9 360 aaPredicted RBP14.71□□□□□ -0.06
VRK3-217ENST00000599538 MCMBPQ9BTE3 642 aa14.71□□□□□ -0.06
VRK3-217ENST00000599538 NT5MQ9NPB1 228 aa14.71□□□□□ -0.06
VRK3-217ENST00000599538 H7C4K7 107 aa14.7□□□□□ -0.06
VRK3-217ENST00000599538 ANXA9O76027 345 aa14.7□□□□□ -0.06
VRK3-217ENST00000599538 GJB5O95377 273 aa14.7□□□□□ -0.06
VRK3-217ENST00000599538 SEC24AO95486 1093 aa14.7□□□□□ -0.06
VRK3-217ENST00000599538 TROVE2P10155 538 aaKnown RBP eCLIP14.7□□□□□ -0.06
VRK3-217ENST00000599538 KCNA4P22459 653 aa14.7□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms