RNA–Protein interactions for RNA: ENST00000597618.5

TRIM28-210, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 609 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-210ENST00000597618 CSF2P04141 144 aa10.4□□□□□ -0.74
TRIM28-210ENST00000597618 FYNP06241 537 aa10.4□□□□□ -0.74
TRIM28-210ENST00000597618 CENPBP07199 599 aaPredicted RBP10.4□□□□□ -0.74
TRIM28-210ENST00000597618 PAEPP09466 180 aa10.4□□□□□ -0.74
TRIM28-210ENST00000597618 EPB41P11171 864 aaKnown RBP10.4□□□□□ -0.74
TRIM28-210ENST00000597618 TBXAS1P24557 533 aaPredicted RBP10.4□□□□□ -0.74
TRIM28-210ENST00000597618 RPIAP49247 311 aa10.4□□□□□ -0.74
TRIM28-210ENST00000597618 NUMBP49757 651 aa10.4□□□□□ -0.74
TRIM28-210ENST00000597618 CLDN2P57739 230 aa10.4□□□□□ -0.74
TRIM28-210ENST00000597618 STILQ15468 1287 aa10.4□□□□□ -0.74
TRIM28-210ENST00000597618 CXorf57Q6NSI4 855 aaKnown RBP10.4□□□□□ -0.74
TRIM28-210ENST00000597618 KYAT3Q6YP21 454 aaKnown RBP10.4□□□□□ -0.74
TRIM28-210ENST00000597618 BEND5Q7L4P6 421 aa10.4□□□□□ -0.74
TRIM28-210ENST00000597618 GLMNQ92990 594 aa10.4□□□□□ -0.74
TRIM28-210ENST00000597618 NAT6Q93015 286 aa10.4□□□□□ -0.74
TRIM28-210ENST00000597618 FAM149B1Q96BN6 582 aa10.4□□□□□ -0.74
TRIM28-210ENST00000597618 NOX5Q96PH1 765 aa10.4□□□□□ -0.74
TRIM28-210ENST00000597618 SRRTQ9BXP5 876 aaKnown RBP10.4□□□□□ -0.74
TRIM28-210ENST00000597618 MIS12Q9H081 205 aa10.4□□□□□ -0.74
TRIM28-210ENST00000597618 CAAP1Q9H8G2 361 aa10.4□□□□□ -0.74
TRIM28-210ENST00000597618 WDR70Q9NW82 654 aa10.4□□□□□ -0.74
TRIM28-210ENST00000597618 ANKMY1Q9P2S6 941 aa10.4□□□□□ -0.74
TRIM28-210ENST00000597618 SEPT3Q9UH03 358 aa10.4□□□□□ -0.74
TRIM28-210ENST00000597618 SALL4Q9UJQ4 1053 aa10.4□□□□□ -0.74
TRIM28-210ENST00000597618 PCDHA7Q9UN72 937 aa10.4□□□□□ -0.74
TRIM28-210ENST00000597618 NAALADL1Q9UQQ1 740 aa10.4□□□□□ -0.74
TRIM28-210ENST00000597618 PCDHGA7Q9Y5G6 932 aa10.4□□□□□ -0.74
TRIM28-210ENST00000597618 USP9YO00507 2555 aaPredicted RBP10.39□□□□□ -0.75
TRIM28-210ENST00000597618 SPTY2D1-AS1A0A0U1RR47 76 aa10.39□□□□□ -0.75
TRIM28-210ENST00000597618 KPNA3O00505 521 aaPredicted RBP10.39□□□□□ -0.75
TRIM28-210ENST00000597618 TPP1O14773 563 aa10.39□□□□□ -0.75
TRIM28-210ENST00000597618 EFSO43281 561 aa10.39□□□□□ -0.75
TRIM28-210ENST00000597618 AQP9O43315 295 aa10.39□□□□□ -0.75
TRIM28-210ENST00000597618 BNIP3LO60238 219 aa10.39□□□□□ -0.75
TRIM28-210ENST00000597618 RHOBTB3O94955 611 aa10.39□□□□□ -0.75
TRIM28-210ENST00000597618 PCDH8O95206 1070 aa10.39□□□□□ -0.75
TRIM28-210ENST00000597618 NFKB2Q00653 900 aa10.39□□□□□ -0.75
TRIM28-210ENST00000597618 EIF3IQ13347 325 aaKnown RBP10.39□□□□□ -0.75
TRIM28-210ENST00000597618 SPIDRQ14159 915 aa10.39□□□□□ -0.75
TRIM28-210ENST00000597618 FZD2Q14332 565 aa10.39□□□□□ -0.75
TRIM28-210ENST00000597618 CNGA2Q16280 664 aa10.39□□□□□ -0.75
TRIM28-210ENST00000597618 DEFB133Q30KQ1 61 aa10.39□□□□□ -0.75
TRIM28-210ENST00000597618 EDRF1Q3B7T1 1238 aa10.39□□□□□ -0.75
TRIM28-210ENST00000597618 TMEM259Q4ZIN3 620 aa10.39□□□□□ -0.75
TRIM28-210ENST00000597618 ZC3H12AQ5D1E8 599 aaKnown RBP10.39□□□□□ -0.75
TRIM28-210ENST00000597618 SEL1L3Q68CR1 1132 aa10.39□□□□□ -0.75
TRIM28-210ENST00000597618 OR6B2Q6IFH4 312 aa10.39□□□□□ -0.75
TRIM28-210ENST00000597618 CRTC1Q6UUV9 634 aa10.39□□□□□ -0.75
TRIM28-210ENST00000597618 CIR1Q86X95 450 aaPredicted RBP10.39□□□□□ -0.75
TRIM28-210ENST00000597618 GUF1Q8N442 669 aaKnown RBP10.39□□□□□ -0.75
TRIM28-210ENST00000597618 SH2D3CQ8N5H7 860 aa10.39□□□□□ -0.75
TRIM28-210ENST00000597618 UBR7Q8N806 425 aa10.39□□□□□ -0.75
TRIM28-210ENST00000597618 ATP6V0D2Q8N8Y2 350 aa10.39□□□□□ -0.75
TRIM28-210ENST00000597618 TFAP2BQ92481 460 aa10.39□□□□□ -0.75
TRIM28-210ENST00000597618 EXTL1Q92935 676 aa10.39□□□□□ -0.75
TRIM28-210ENST00000597618 LIN37Q96GY3 246 aaPredicted RBP10.39□□□□□ -0.75
TRIM28-210ENST00000597618 IL12RB2Q99665 862 aa10.39□□□□□ -0.75
TRIM28-210ENST00000597618 SEMA3CQ99985 751 aa10.39□□□□□ -0.75
TRIM28-210ENST00000597618 USP25Q9UHP3 1055 aa10.39□□□□□ -0.75
TRIM28-210ENST00000597618 SLC12A6Q9UHW9 1150 aa10.39□□□□□ -0.75
TRIM28-210ENST00000597618 VPS28Q9UK41 221 aa10.39□□□□□ -0.75
TRIM28-210ENST00000597618 ACSL6Q9UKU0 697 aa10.39□□□□□ -0.75
TRIM28-210ENST00000597618 MAPK8IP1Q9UQF2 711 aa10.39□□□□□ -0.75
TRIM28-210ENST00000597618 COQ4Q9Y3A0 265 aa10.39□□□□□ -0.75
TRIM28-210ENST00000597618 HS3ST3A1Q9Y663 406 aa10.39□□□□□ -0.75
TRIM28-210ENST00000597618 KCNU1A8MYU2 1149 aa10.38□□□□□ -0.75
TRIM28-210ENST00000597618 PLD2O14939 933 aa10.38□□□□□ -0.75
TRIM28-210ENST00000597618 MUSKO15146 869 aa10.38□□□□□ -0.75
TRIM28-210ENST00000597618 PPFIA2O75334 1257 aa10.38□□□□□ -0.75
TRIM28-210ENST00000597618 PRNPP04156 253 aa10.38□□□□□ -0.75
TRIM28-210ENST00000597618 CTSLP07711 333 aa10.38□□□□□ -0.75
TRIM28-210ENST00000597618 FAM87AP0C7U9 286 aa10.38□□□□□ -0.75
TRIM28-210ENST00000597618 ITGB6P18564 788 aa10.38□□□□□ -0.75
TRIM28-210ENST00000597618 CHRNA3P32297 505 aa10.38□□□□□ -0.75
TRIM28-210ENST00000597618 RABIFP47224 123 aa10.38□□□□□ -0.75
TRIM28-210ENST00000597618 PDX1P52945 283 aa10.38□□□□□ -0.75
TRIM28-210ENST00000597618 RPS21P63220 83 aaKnown RBP10.38□□□□□ -0.75
TRIM28-210ENST00000597618 CBWD6Q4V339 395 aa10.38□□□□□ -0.75
TRIM28-210ENST00000597618 ZCWPW2Q504Y3 356 aa10.38□□□□□ -0.75
TRIM28-210ENST00000597618 DCAF17Q5H9S7 520 aaPredicted RBP10.38□□□□□ -0.75
TRIM28-210ENST00000597618 CBWD3Q5JTY5 395 aa10.38□□□□□ -0.75
TRIM28-210ENST00000597618 CBWD5Q5RIA9 395 aa10.38□□□□□ -0.75
TRIM28-210ENST00000597618 PERM1Q5SV97 790 aa10.38□□□□□ -0.75
TRIM28-210ENST00000597618 TCERG1LQ5VWI1 586 aa10.38□□□□□ -0.75
TRIM28-210ENST00000597618 KIAA1161Q6NSJ0 714 aa10.38□□□□□ -0.75
TRIM28-210ENST00000597618 TMEM270Q6UE05 265 aa10.38□□□□□ -0.75
TRIM28-210ENST00000597618 ERN2Q76MJ5 926 aaKnown RBP10.38□□□□□ -0.75
TRIM28-210ENST00000597618 C14orf80Q86SX3 495 aa10.38□□□□□ -0.75
TRIM28-210ENST00000597618 TMIEQ8NEW7 156 aa10.38□□□□□ -0.75
TRIM28-210ENST00000597618 LMX1AQ8TE12 382 aa10.38□□□□□ -0.75
TRIM28-210ENST00000597618 ALG14Q96F25 216 aa10.38□□□□□ -0.75
TRIM28-210ENST00000597618 PPP1R16AQ96I34 528 aa10.38□□□□□ -0.75
TRIM28-210ENST00000597618 BMFQ96LC9 184 aa10.38□□□□□ -0.75
TRIM28-210ENST00000597618 RPRD1AQ96P16 312 aaPredicted RBP10.38□□□□□ -0.75
TRIM28-210ENST00000597618 PRMT1Q99873 361 aaKnown RBP10.38□□□□□ -0.75
TRIM28-210ENST00000597618 FEM1AQ9BSK4 669 aa10.38□□□□□ -0.75
TRIM28-210ENST00000597618 BOCQ9BWV1 1114 aa10.38□□□□□ -0.75
TRIM28-210ENST00000597618 HDAC8Q9BY41 377 aa10.38□□□□□ -0.75
TRIM28-210ENST00000597618 SYNDIG1Q9H7V2 258 aa10.38□□□□□ -0.75
TRIM28-210ENST00000597618 SLTMQ9NWH9 1034 aaKnown RBP eCLIP10.38□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms