RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 J3KR12 359 aa15.55■□□□□ 0.08
TRIM28-209ENST00000597423 CBX4O00257 560 aa15.55■□□□□ 0.08
TRIM28-209ENST00000597423 CHADO15335 359 aa15.55■□□□□ 0.08
TRIM28-209ENST00000597423 SEC31AO94979 1220 aaKnown RBP15.55■□□□□ 0.08
TRIM28-209ENST00000597423 CES1P23141 567 aa15.55■□□□□ 0.08
TRIM28-209ENST00000597423 FCARP24071 287 aa15.55■□□□□ 0.08
TRIM28-209ENST00000597423 IVDP26440 423 aa15.55■□□□□ 0.08
TRIM28-209ENST00000597423 CARSP49589 748 aaKnown RBP15.55■□□□□ 0.08
TRIM28-209ENST00000597423 BASP1P80723 227 aaKnown RBP15.55■□□□□ 0.08
TRIM28-209ENST00000597423 CDK16Q00536 496 aa15.55■□□□□ 0.08
TRIM28-209ENST00000597423 SULT2A1Q06520 285 aa15.55■□□□□ 0.08
TRIM28-209ENST00000597423 LBRQ14739 615 aaKnown RBP15.55■□□□□ 0.08
TRIM28-209ENST00000597423 VITQ6UXI7 678 aa15.55■□□□□ 0.08
TRIM28-209ENST00000597423 ARHGAP36Q6ZRI8 547 aa15.55■□□□□ 0.08
TRIM28-209ENST00000597423 HOOK3Q86VS8 718 aa15.55■□□□□ 0.08
TRIM28-209ENST00000597423 ZNF567Q8N184 647 aa15.55■□□□□ 0.08
TRIM28-209ENST00000597423 TEX26Q8N6G2 289 aa15.55■□□□□ 0.08
TRIM28-209ENST00000597423 DCAF4L2Q8NA75 395 aa15.55■□□□□ 0.08
TRIM28-209ENST00000597423 GLIS1Q8NBF1 620 aa15.55■□□□□ 0.08
TRIM28-209ENST00000597423 RIN3Q8TB24 985 aa15.55■□□□□ 0.08
TRIM28-209ENST00000597423 LRRN4Q8WUT4 740 aa15.55■□□□□ 0.08
TRIM28-209ENST00000597423 HNRNPLLQ8WVV9 542 aaKnown RBP15.55■□□□□ 0.08
TRIM28-209ENST00000597423 EXOC4Q96A65 974 aa15.55■□□□□ 0.08
TRIM28-209ENST00000597423 AGAP3Q96P47 875 aa15.55■□□□□ 0.08
TRIM28-209ENST00000597423 FAM83CQ9BQN1 747 aa15.55■□□□□ 0.08
TRIM28-209ENST00000597423 SEPT3Q9UH03 358 aa15.55■□□□□ 0.08
TRIM28-209ENST00000597423 RSPH14Q9UHP6 348 aa15.55■□□□□ 0.08
TRIM28-209ENST00000597423 NFU1Q9UMS0 254 aa15.55■□□□□ 0.08
TRIM28-209ENST00000597423 AAR2Q9Y312 384 aaKnown RBP15.55■□□□□ 0.08
TRIM28-209ENST00000597423 TRIOBPQ9H2D6 2365 aa15.55■□□□□ 0.08
TRIM28-209ENST00000597423 ATG2AQ2TAZ0 1938 aa15.55■□□□□ 0.08
TRIM28-209ENST00000597423 ERI2A8K979 691 aaKnown RBP15.54■□□□□ 0.08
TRIM28-209ENST00000597423 ZBTB24O43167 697 aaPredicted RBP15.54■□□□□ 0.08
TRIM28-209ENST00000597423 TIMM44O43615 452 aa15.54■□□□□ 0.08
TRIM28-209ENST00000597423 ANXA9O76027 345 aa15.54■□□□□ 0.08
TRIM28-209ENST00000597423 HSPA9P38646 679 aaKnown RBP15.54■□□□□ 0.08
TRIM28-209ENST00000597423 CSKP41240 450 aa15.54■□□□□ 0.08
TRIM28-209ENST00000597423 MMP13P45452 471 aa15.54■□□□□ 0.08
TRIM28-209ENST00000597423 ITGA8P53708 1063 aa15.54■□□□□ 0.08
TRIM28-209ENST00000597423 TNK2Q07912 1038 aa15.54■□□□□ 0.08
TRIM28-209ENST00000597423 LMAN2Q12907 356 aa15.54■□□□□ 0.08
TRIM28-209ENST00000597423 ZNF235Q14590 738 aa15.54■□□□□ 0.08
TRIM28-209ENST00000597423 INO80DQ53TQ3 878 aaPredicted RBP15.54■□□□□ 0.08
TRIM28-209ENST00000597423 FSCBQ5H9T9 825 aa15.54■□□□□ 0.08
TRIM28-209ENST00000597423 HABP4Q5JVS0 413 aaKnown RBP15.54■□□□□ 0.08
TRIM28-209ENST00000597423 EMBQ6PCB8 327 aa15.54■□□□□ 0.08
TRIM28-209ENST00000597423 NUDT18Q6ZVK8 323 aa15.54■□□□□ 0.08
TRIM28-209ENST00000597423 PRUNE1Q86TP1 453 aa15.54■□□□□ 0.08
TRIM28-209ENST00000597423 WFIKKN2Q8TEU8 576 aa15.54■□□□□ 0.08
TRIM28-209ENST00000597423 PPM1EQ8WY54 764 aa15.54■□□□□ 0.08
TRIM28-209ENST00000597423 FMO2Q99518 471 aa15.54■□□□□ 0.08
TRIM28-209ENST00000597423 ECT2Q9H8V3 914 aa15.54■□□□□ 0.08
TRIM28-209ENST00000597423 ETNK1Q9HBU6 452 aa15.54■□□□□ 0.08
TRIM28-209ENST00000597423 SHOC2Q9UQ13 582 aa15.54■□□□□ 0.08
TRIM28-209ENST00000597423 OR51B4Q9Y5P0 310 aa15.54■□□□□ 0.08
TRIM28-209ENST00000597423 ANHXE9PGG2 379 aa15.53■□□□□ 0.08
TRIM28-209ENST00000597423 AP3B1O00203 1094 aa15.53■□□□□ 0.08
TRIM28-209ENST00000597423 MBTPS2O43462 519 aa15.53■□□□□ 0.08
TRIM28-209ENST00000597423 CACNG3O60359 315 aa15.53■□□□□ 0.08
TRIM28-209ENST00000597423 CYP17A1P05093 508 aa15.53■□□□□ 0.08
TRIM28-209ENST00000597423 MZF1P28698 734 aaPredicted RBP15.53■□□□□ 0.08
TRIM28-209ENST00000597423 GDI1P31150 447 aa15.53■□□□□ 0.08
TRIM28-209ENST00000597423 ITKQ08881 620 aa15.53■□□□□ 0.08
TRIM28-209ENST00000597423 RUNX3Q13761 415 aa15.53■□□□□ 0.08
TRIM28-209ENST00000597423 E2F5Q15329 346 aa15.53■□□□□ 0.08
TRIM28-209ENST00000597423 RNASEH2BQ5TBB1 312 aaKnown RBP15.53■□□□□ 0.08
TRIM28-209ENST00000597423 HIBCHQ6NVY1 386 aaPredicted RBP15.53■□□□□ 0.08
TRIM28-209ENST00000597423 PARM1Q6UWI2 310 aa15.53■□□□□ 0.08
TRIM28-209ENST00000597423 Q7L0L9 218 aa15.53■□□□□ 0.08
TRIM28-209ENST00000597423 USP33Q8TEY7 942 aa15.53■□□□□ 0.08
TRIM28-209ENST00000597423 FCRL5Q96RD9 977 aa15.53■□□□□ 0.08
TRIM28-209ENST00000597423 KXD1Q9BQD3 176 aa15.53■□□□□ 0.08
TRIM28-209ENST00000597423 CINPQ9BW66 212 aaPredicted RBP15.53■□□□□ 0.08
TRIM28-209ENST00000597423 PHF7Q9BWX1 381 aaPredicted RBP15.53■□□□□ 0.08
TRIM28-209ENST00000597423 GBA3Q9H227 469 aa15.53■□□□□ 0.08
TRIM28-209ENST00000597423 EBF3Q9H4W6 596 aa15.53■□□□□ 0.08
TRIM28-209ENST00000597423 GLOD4Q9HC38 313 aa15.53■□□□□ 0.08
TRIM28-209ENST00000597423 ARFGAP3Q9NP61 516 aa15.53■□□□□ 0.08
TRIM28-209ENST00000597423 ABCB8Q9NUT2 735 aa15.53■□□□□ 0.08
TRIM28-209ENST00000597423 GRHL1Q9NZI5 618 aa15.53■□□□□ 0.08
TRIM28-209ENST00000597423 DEC1Q9P2X7 70 aa15.53■□□□□ 0.08
TRIM28-209ENST00000597423 GGA2Q9UJY4 613 aa15.53■□□□□ 0.08
TRIM28-209ENST00000597423 FBXO10Q9UK96 956 aa15.53■□□□□ 0.08
TRIM28-209ENST00000597423 GRXCR2A6NFK2 248 aa15.52■□□□□ 0.08
TRIM28-209ENST00000597423 PALM2-AKAP2B1ALY0 433 aaPredicted RBP15.52■□□□□ 0.08
TRIM28-209ENST00000597423 METTL18O95568 372 aa15.52■□□□□ 0.08
TRIM28-209ENST00000597423 PEX11BO96011 259 aa15.52■□□□□ 0.08
TRIM28-209ENST00000597423 ATP5BP06576 529 aaKnown RBP15.52■□□□□ 0.08
TRIM28-209ENST00000597423 PABPC1P11940 636 aaKnown RBP15.52■□□□□ 0.08
TRIM28-209ENST00000597423 POLR2EP19388 210 aaKnown RBP15.52■□□□□ 0.08
TRIM28-209ENST00000597423 TPSB2P20231 275 aa15.52■□□□□ 0.08
TRIM28-209ENST00000597423 NNMTP40261 264 aa15.52■□□□□ 0.08
TRIM28-209ENST00000597423 MAGEA6P43360 314 aa15.52■□□□□ 0.08
TRIM28-209ENST00000597423 TNNT3P45378 269 aaPredicted RBP15.52■□□□□ 0.08
TRIM28-209ENST00000597423 DGKGP49619 791 aa15.52■□□□□ 0.08
TRIM28-209ENST00000597423 GEMP55040 296 aa15.52■□□□□ 0.08
TRIM28-209ENST00000597423 SLC10A7Q0GE19 358 aa15.52■□□□□ 0.08
TRIM28-209ENST00000597423 ZBTB17Q13105 803 aa15.52■□□□□ 0.08
TRIM28-209ENST00000597423 SEMA5AQ13591 1074 aa15.52■□□□□ 0.08
TRIM28-209ENST00000597423 SLMAPQ14BN4 828 aa15.52■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms