RNA–Protein interactions for RNA: ENST00000596457.1

LIG1-211, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 792 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-211ENST00000596457 TARSL2A2RTX5 802 aaKnown RBP11.33□□□□□ -0.6
LIG1-211ENST00000596457 PRR5-ARHGAP8B1AHC4 643 aa11.33□□□□□ -0.6
LIG1-211ENST00000596457 RASA4BC9J798 803 aa11.33□□□□□ -0.6
LIG1-211ENST00000596457 DFFAO00273 331 aa11.33□□□□□ -0.6
LIG1-211ENST00000596457 RASA4O43374 803 aa11.33□□□□□ -0.6
LIG1-211ENST00000596457 SMAD6O43541 496 aaKnown RBP11.33□□□□□ -0.6
LIG1-211ENST00000596457 BUB1O43683 1085 aa11.33□□□□□ -0.6
LIG1-211ENST00000596457 NDUFS2O75306 463 aa11.33□□□□□ -0.6
LIG1-211ENST00000596457 RHOBTB1O94844 696 aa11.33□□□□□ -0.6
LIG1-211ENST00000596457 RETP07949 1114 aa11.33□□□□□ -0.6
LIG1-211ENST00000596457 ERCC2P18074 760 aa11.33□□□□□ -0.6
LIG1-211ENST00000596457 ETFBP38117 255 aa11.33□□□□□ -0.6
LIG1-211ENST00000596457 P2RY2P41231 377 aa11.33□□□□□ -0.6
LIG1-211ENST00000596457 ARHGAP25P42331 645 aa11.33□□□□□ -0.6
LIG1-211ENST00000596457 PSMD8P48556 350 aa11.33□□□□□ -0.6
LIG1-211ENST00000596457 DHPSP49366 369 aaPredicted RBP11.33□□□□□ -0.6
LIG1-211ENST00000596457 RPS14P62263 151 aaKnown RBP11.33□□□□□ -0.6
LIG1-211ENST00000596457 ARHGAP8P85298 464 aa11.33□□□□□ -0.6
LIG1-211ENST00000596457 SLC25A11Q02978 314 aaKnown RBP11.33□□□□□ -0.6
LIG1-211ENST00000596457 MMRN1Q13201 1228 aa11.33□□□□□ -0.6
LIG1-211ENST00000596457 ELF2Q15723 593 aa11.33□□□□□ -0.6
LIG1-211ENST00000596457 MAP7D1Q3KQU3 841 aa11.33□□□□□ -0.6
LIG1-211ENST00000596457 C9orf64Q5T6V5 341 aa11.33□□□□□ -0.6
LIG1-211ENST00000596457 ZNF776Q68DI1 518 aaPredicted RBP11.33□□□□□ -0.6
LIG1-211ENST00000596457 RETSATQ6NUM9 610 aa11.33□□□□□ -0.6
LIG1-211ENST00000596457 Q6ZVU0 165 aa11.33□□□□□ -0.6
LIG1-211ENST00000596457 KIAA1328Q86T90 577 aa11.33□□□□□ -0.6
LIG1-211ENST00000596457 PSTKQ8IV42 348 aaKnown RBP11.33□□□□□ -0.6
LIG1-211ENST00000596457 MMAAQ8IVH4 418 aaKnown RBP11.33□□□□□ -0.6
LIG1-211ENST00000596457 TMEFF1Q8IYR6 380 aa11.33□□□□□ -0.6
LIG1-211ENST00000596457 DCLK2Q8N568 766 aa11.33□□□□□ -0.6
LIG1-211ENST00000596457 DCAF4L2Q8NA75 395 aa11.33□□□□□ -0.6
LIG1-211ENST00000596457 KDM1BQ8NB78 822 aa11.33□□□□□ -0.6
LIG1-211ENST00000596457 DUSP15Q9H1R2 295 aaPredicted RBP11.33□□□□□ -0.6
LIG1-211ENST00000596457 RETREG1Q9H6L5 497 aa11.33□□□□□ -0.6
LIG1-211ENST00000596457 LCMT1Q9UIC8 334 aa11.33□□□□□ -0.6
LIG1-211ENST00000596457 MBD1Q9UIS9 605 aaPredicted RBP11.33□□□□□ -0.6
LIG1-211ENST00000596457 RALGAPA1Q6GYQ0 2036 aa11.32□□□□□ -0.6
LIG1-211ENST00000596457 NUP205Q92621 2012 aa11.32□□□□□ -0.6
LIG1-211ENST00000596457 IGHV1OR15-9A0A0B4J2B8 117 aa11.32□□□□□ -0.6
LIG1-211ENST00000596457 WASH4PA8MWX3 477 aa11.32□□□□□ -0.6
LIG1-211ENST00000596457 MID1O15344 667 aa11.32□□□□□ -0.6
LIG1-211ENST00000596457 KDELR3O43731 214 aa11.32□□□□□ -0.6
LIG1-211ENST00000596457 SPOPO43791 374 aa11.32□□□□□ -0.6
LIG1-211ENST00000596457 ATP9BO43861 1147 aa11.32□□□□□ -0.6
LIG1-211ENST00000596457 ZNF217O75362 1048 aa11.32□□□□□ -0.6
LIG1-211ENST00000596457 LCA5LO95447 670 aa11.32□□□□□ -0.6
LIG1-211ENST00000596457 IL1BP01584 269 aa11.32□□□□□ -0.6
LIG1-211ENST00000596457 CD48P09326 243 aa11.32□□□□□ -0.6
LIG1-211ENST00000596457 HTR7P34969 479 aa11.32□□□□□ -0.6
LIG1-211ENST00000596457 TPMTP51580 245 aa11.32□□□□□ -0.6
LIG1-211ENST00000596457 ARF5P84085 180 aa11.32□□□□□ -0.6
LIG1-211ENST00000596457 RPL6Q02878 288 aaKnown RBP11.32□□□□□ -0.6
LIG1-211ENST00000596457 PUM1Q14671 1186 aaKnown RBP eCLIP11.32□□□□□ -0.6
LIG1-211ENST00000596457 CCDC6Q16204 474 aa11.32□□□□□ -0.6
LIG1-211ENST00000596457 DPYSL2Q16555 572 aa11.32□□□□□ -0.6
LIG1-211ENST00000596457 POM121L1PQ3SYA9 428 aa11.32□□□□□ -0.6
LIG1-211ENST00000596457 PLK5Q496M5 336 aa11.32□□□□□ -0.6
LIG1-211ENST00000596457 ODF2Q5BJF6 829 aa11.32□□□□□ -0.6
LIG1-211ENST00000596457 LPCAT2Q7L5N7 544 aa11.32□□□□□ -0.6
LIG1-211ENST00000596457 POLNQ7Z5Q5 900 aa11.32□□□□□ -0.6
LIG1-211ENST00000596457 KIAA2013Q8IYS2 634 aa11.32□□□□□ -0.6
LIG1-211ENST00000596457 RYBPQ8N488 228 aaPredicted RBP11.32□□□□□ -0.6
LIG1-211ENST00000596457 FRS2Q8WU20 508 aa11.32□□□□□ -0.6
LIG1-211ENST00000596457 TEKT4Q8WW24 435 aa11.32□□□□□ -0.6
LIG1-211ENST00000596457 OR8D1Q8WZ84 308 aa11.32□□□□□ -0.6
LIG1-211ENST00000596457 HMCESQ96FZ2 354 aa11.32□□□□□ -0.6
LIG1-211ENST00000596457 LOXL4Q96JB6 756 aa11.32□□□□□ -0.6
LIG1-211ENST00000596457 FAM129BQ96TA1 746 aa11.32□□□□□ -0.6
LIG1-211ENST00000596457 OMDQ99983 421 aa11.32□□□□□ -0.6
LIG1-211ENST00000596457 DESI2Q9BSY9 194 aa11.32□□□□□ -0.6
LIG1-211ENST00000596457 CALN1Q9BXU9 219 aa11.32□□□□□ -0.6
LIG1-211ENST00000596457 ACE2Q9BYF1 805 aaPredicted RBP11.32□□□□□ -0.6
LIG1-211ENST00000596457 SLC39A8Q9C0K1 460 aa11.32□□□□□ -0.6
LIG1-211ENST00000596457 KLC2Q9H0B6 622 aa11.32□□□□□ -0.6
LIG1-211ENST00000596457 ARRDC1-AS1Q9H2J1 176 aa11.32□□□□□ -0.6
LIG1-211ENST00000596457 NOL6Q9H6R4 1146 aaKnown RBP11.32□□□□□ -0.6
LIG1-211ENST00000596457 PCDH18Q9HCL0 1135 aa11.32□□□□□ -0.6
LIG1-211ENST00000596457 ITM2CQ9NQX7 267 aa11.32□□□□□ -0.6
LIG1-211ENST00000596457 NCKAP1Q9Y2A7 1128 aa11.32□□□□□ -0.6
LIG1-211ENST00000596457 FCF1Q9Y324 198 aaKnown RBP11.32□□□□□ -0.6
LIG1-211ENST00000596457 MFHAS1Q9Y4C4 1052 aa11.32□□□□□ -0.6
LIG1-211ENST00000596457 FARP1Q9Y4F1 1045 aaPredicted RBP11.32□□□□□ -0.6
LIG1-211ENST00000596457 FAM208BQ5VWN6 2430 aa11.31□□□□□ -0.6
LIG1-211ENST00000596457 PLXND1Q9Y4D7 1925 aa11.31□□□□□ -0.6
LIG1-211ENST00000596457 CHD5Q8TDI0 1954 aa11.31□□□□□ -0.6
LIG1-211ENST00000596457 RCCD1A6NED2 376 aa11.31□□□□□ -0.6
LIG1-211ENST00000596457 ARHGAP42A6NI28 874 aa11.31□□□□□ -0.6
LIG1-211ENST00000596457 ZMPSTE24O75844 475 aa11.31□□□□□ -0.6
LIG1-211ENST00000596457 KRT7P08729 469 aa11.31□□□□□ -0.6
LIG1-211ENST00000596457 COMTP21964 271 aa11.31□□□□□ -0.6
LIG1-211ENST00000596457 FECHP22830 423 aa11.31□□□□□ -0.6
LIG1-211ENST00000596457 CD6P30203 668 aa11.31□□□□□ -0.6
LIG1-211ENST00000596457 SLC8A1P32418 973 aa11.31□□□□□ -0.6
LIG1-211ENST00000596457 MAN1A1P33908 653 aa11.31□□□□□ -0.6
LIG1-211ENST00000596457 RECQLP46063 649 aaPredicted RBP11.31□□□□□ -0.6
LIG1-211ENST00000596457 HCAR3P49019 387 aa11.31□□□□□ -0.6
LIG1-211ENST00000596457 PAPOLAP51003 745 aaKnown RBP11.31□□□□□ -0.6
LIG1-211ENST00000596457 GSDMDP57764 484 aa11.31□□□□□ -0.6
LIG1-211ENST00000596457 YBEYP58557 167 aaPredicted RBP11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms