RNA–Protein interactions for RNA: ENST00000578595.1

SS18-209, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 406 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-209ENST00000578595 MIR1-1HGQ9H1L0 117 aa19.93■□□□□ 0.78
SS18-209ENST00000578595 MAGEH1Q9H213 219 aa19.93■□□□□ 0.78
SS18-209ENST00000578595 TNKS2Q9H2K2 1166 aa19.93■□□□□ 0.78
SS18-209ENST00000578595 NHEJ1Q9H9Q4 299 aaPredicted RBP19.93■□□□□ 0.78
SS18-209ENST00000578595 ZNF212Q9UDV6 495 aa19.93■□□□□ 0.78
SS18-209ENST00000578595 CDV3Q9UKY7 258 aaKnown RBP19.93■□□□□ 0.78
SS18-209ENST00000578595 NEU3Q9UQ49 428 aa19.93■□□□□ 0.78
SS18-209ENST00000578595 HS3ST2Q9Y278 367 aa19.93■□□□□ 0.78
SS18-209ENST00000578595 ANKRD36A6QL64 1941 aa19.93■□□□□ 0.78
SS18-209ENST00000578595 PLXNA2O75051 1894 aa19.92■□□□□ 0.78
SS18-209ENST00000578595 DOCK9Q9BZ29 2069 aa19.92■□□□□ 0.78
SS18-209ENST00000578595 LOC105378220A0A1B0GUY1 285 aaPredicted RBP19.92■□□□□ 0.78
SS18-209ENST00000578595 TMEM110-MUSTN1A8MSY1 372 aa19.92■□□□□ 0.78
SS18-209ENST00000578595 C1QTNF3-AMACRE9PGA6 284 aa19.92■□□□□ 0.78
SS18-209ENST00000578595 MYO1FO00160 1098 aa19.92■□□□□ 0.78
SS18-209ENST00000578595 KHNYNO15037 678 aaKnown RBP19.92■□□□□ 0.78
SS18-209ENST00000578595 FOXD2O60548 495 aaPredicted RBP19.92■□□□□ 0.78
SS18-209ENST00000578595 ADH1BP00325 375 aa19.92■□□□□ 0.78
SS18-209ENST00000578595 ZNF806P0C7X5 589 aa19.92■□□□□ 0.78
SS18-209ENST00000578595 SLC8A1P32418 973 aa19.92■□□□□ 0.78
SS18-209ENST00000578595 ACSL1P33121 698 aa19.92■□□□□ 0.78
SS18-209ENST00000578595 DPP6P42658 865 aa19.92■□□□□ 0.78
SS18-209ENST00000578595 WDR45BQ5MNZ6 344 aa19.92■□□□□ 0.78
SS18-209ENST00000578595 DCAF12L1Q5VU92 463 aa19.92■□□□□ 0.78
SS18-209ENST00000578595 LEKR1Q6ZMV7 388 aa19.92■□□□□ 0.78
SS18-209ENST00000578595 SYT12Q8IV01 421 aa19.92■□□□□ 0.78
SS18-209ENST00000578595 RYBPQ8N488 228 aaPredicted RBP19.92■□□□□ 0.78
SS18-209ENST00000578595 HDDC3Q8N4P3 179 aa19.92■□□□□ 0.78
SS18-209ENST00000578595 ARFGAP1Q8N6T3 406 aa19.92■□□□□ 0.78
SS18-209ENST00000578595 FRS2Q8WU20 508 aa19.92■□□□□ 0.78
SS18-209ENST00000578595 KCTD15Q96SI1 283 aaPredicted RBP19.92■□□□□ 0.78
SS18-209ENST00000578595 RETREG1Q9H6L5 497 aa19.92■□□□□ 0.78
SS18-209ENST00000578595 SCML1Q9UN30 329 aa19.92■□□□□ 0.78
SS18-209ENST00000578595 CACNA1EQ15878 2313 aa19.91■□□□□ 0.78
SS18-209ENST00000578595 PATE3B3GLJ2 98 aa19.91■□□□□ 0.78
SS18-209ENST00000578595 SMAD6O43541 496 aaKnown RBP19.91■□□□□ 0.78
SS18-209ENST00000578595 SEMA4FO95754 770 aa19.91■□□□□ 0.78
SS18-209ENST00000578595 TGM1P22735 817 aa19.91■□□□□ 0.78
SS18-209ENST00000578595 MAOBP27338 520 aa19.91■□□□□ 0.78
SS18-209ENST00000578595 SERPINH1P50454 418 aaKnown RBP19.91■□□□□ 0.78
SS18-209ENST00000578595 CLCN6P51797 869 aa19.91■□□□□ 0.78
SS18-209ENST00000578595 ACAP1Q15027 740 aa19.91■□□□□ 0.78
SS18-209ENST00000578595 TRIM61Q5EBN2 209 aa19.91■□□□□ 0.78
SS18-209ENST00000578595 KCNT1Q5JUK3 1230 aa19.91■□□□□ 0.78
SS18-209ENST00000578595 PLA2G2CQ5R387 149 aa19.91■□□□□ 0.78
SS18-209ENST00000578595 ZFYVE27Q5T4F4 411 aa19.91■□□□□ 0.78
SS18-209ENST00000578595 ARTNQ5T4W7 220 aa19.91■□□□□ 0.78
SS18-209ENST00000578595 ARHGEF2Q92974 986 aaKnown RBP19.91■□□□□ 0.78
SS18-209ENST00000578595 FAM129BQ96TA1 746 aa19.91■□□□□ 0.78
SS18-209ENST00000578595 STAU2Q9NUL3 570 aaKnown RBP eCLIP19.91■□□□□ 0.78
SS18-209ENST00000578595 SERGEFQ9UGK8 458 aa19.91■□□□□ 0.78
SS18-209ENST00000578595 FCF1Q9Y324 198 aaKnown RBP19.91■□□□□ 0.78
SS18-209ENST00000578595 PRR5-ARHGAP8B1AHC4 643 aa19.9■□□□□ 0.78
SS18-209ENST00000578595 EIF3CLB5ME19 914 aaKnown RBP19.9■□□□□ 0.78
SS18-209ENST00000578595 BUB1O43683 1085 aa19.9■□□□□ 0.78
SS18-209ENST00000578595 GDF9O60383 454 aa19.9■□□□□ 0.78
SS18-209ENST00000578595 FSBPO95073 299 aa19.9■□□□□ 0.78
SS18-209ENST00000578595 IGLV3-19P01714 112 aa19.9■□□□□ 0.78
SS18-209ENST00000578595 TCF4P15884 667 aa19.9■□□□□ 0.78
SS18-209ENST00000578595 GOT1P17174 413 aa19.9■□□□□ 0.78
SS18-209ENST00000578595 C5AR1P21730 350 aa19.9■□□□□ 0.78
SS18-209ENST00000578595 PCK1P35558 622 aa19.9■□□□□ 0.78
SS18-209ENST00000578595 ARL4AP40617 200 aa19.9■□□□□ 0.78
SS18-209ENST00000578595 VASPP50552 380 aaPredicted RBP19.9■□□□□ 0.78
SS18-209ENST00000578595 GEMIN4P57678 1058 aaKnown RBP19.9■□□□□ 0.78
SS18-209ENST00000578595 ARF5P84085 180 aa19.9■□□□□ 0.78
SS18-209ENST00000578595 ARHGAP8P85298 464 aa19.9■□□□□ 0.78
SS18-209ENST00000578595 TBX2Q13207 712 aaPredicted RBP19.9■□□□□ 0.78
SS18-209ENST00000578595 SEMA3BQ13214 749 aa19.9■□□□□ 0.78
SS18-209ENST00000578595 RSPO4Q2I0M5 234 aaPredicted RBP19.9■□□□□ 0.78
SS18-209ENST00000578595 FAM46CQ5VWP2 391 aa19.9■□□□□ 0.78
SS18-209ENST00000578595 PIP4K2CQ8TBX8 421 aa19.9■□□□□ 0.78
SS18-209ENST00000578595 GRIN3AQ8TCU5 1115 aa19.9■□□□□ 0.78
SS18-209ENST00000578595 CELF6Q96J87 481 aaKnown RBP19.9■□□□□ 0.78
SS18-209ENST00000578595 EIF3CQ99613 913 aaKnown RBP19.9■□□□□ 0.78
SS18-209ENST00000578595 EDEM2Q9BV94 578 aa19.9■□□□□ 0.78
SS18-209ENST00000578595 NUSAP1Q9BXS6 441 aaKnown RBP19.9■□□□□ 0.78
SS18-209ENST00000578595 TM6SF2Q9BZW4 377 aa19.9■□□□□ 0.78
SS18-209ENST00000578595 SGK2Q9HBY8 427 aa19.9■□□□□ 0.78
SS18-209ENST00000578595 TMEM74BQ9NUR3 256 aa19.9■□□□□ 0.78
SS18-209ENST00000578595 DONSONQ9NYP3 566 aa19.9■□□□□ 0.78
SS18-209ENST00000578595 ACTL7AQ9Y615 435 aa19.9■□□□□ 0.78
SS18-209ENST00000578595 RASA4BC9J798 803 aa19.89■□□□□ 0.77
SS18-209ENST00000578595 H3BRJ5 948 aa19.89■□□□□ 0.77
SS18-209ENST00000578595 KPNA3O00505 521 aaPredicted RBP19.89■□□□□ 0.77
SS18-209ENST00000578595 RASA4O43374 803 aa19.89■□□□□ 0.77
SS18-209ENST00000578595 GNSP15586 552 aa19.89■□□□□ 0.77
SS18-209ENST00000578595 HTR7P34969 479 aa19.89■□□□□ 0.77
SS18-209ENST00000578595 ID4P47928 161 aa19.89■□□□□ 0.77
SS18-209ENST00000578595 KRT81Q14533 505 aa19.89■□□□□ 0.77
SS18-209ENST00000578595 ASTE1Q2TB18 679 aaPredicted RBP19.89■□□□□ 0.77
SS18-209ENST00000578595 RFX8Q6ZV50 586 aa19.89■□□□□ 0.77
SS18-209ENST00000578595 USP30Q70CQ3 517 aa19.89■□□□□ 0.77
SS18-209ENST00000578595 RABEPKQ7Z6M1 372 aa19.89■□□□□ 0.77
SS18-209ENST00000578595 OR14C36Q8NHC7 312 aa19.89■□□□□ 0.77
SS18-209ENST00000578595 HMCESQ96FZ2 354 aa19.89■□□□□ 0.77
SS18-209ENST00000578595 ZNF419Q96HQ0 510 aaPredicted RBP19.89■□□□□ 0.77
SS18-209ENST00000578595 MRFAP1L1Q96HT8 127 aa19.89■□□□□ 0.77
SS18-209ENST00000578595 ANP32EQ9BTT0 268 aa19.89■□□□□ 0.77
SS18-209ENST00000578595 C6orf106Q9H6K1 298 aaPredicted RBP19.89■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms