RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 INPP5FQ9Y2H2 1132 aa10.26□□□□□ -0.77
VPS53-220ENST00000576149 AAR2Q9Y312 384 aaKnown RBP10.26□□□□□ -0.77
VPS53-220ENST00000576149 TNFRSF10BO14763 440 aa10.26□□□□□ -0.77
VPS53-220ENST00000576149 FGF10O15520 208 aaPredicted RBP10.26□□□□□ -0.77
VPS53-220ENST00000576149 SEPT4O43236 478 aa10.26□□□□□ -0.77
VPS53-220ENST00000576149 PAGE1O75459 146 aa10.26□□□□□ -0.77
VPS53-220ENST00000576149 ITGB1P05556 798 aa10.26□□□□□ -0.77
VPS53-220ENST00000576149 ASGR1P07306 291 aa10.26□□□□□ -0.77
VPS53-220ENST00000576149 HTR7P34969 479 aa10.26□□□□□ -0.77
VPS53-220ENST00000576149 HADHAP40939 763 aa10.26□□□□□ -0.77
VPS53-220ENST00000576149 ABCG1P45844 678 aa10.26□□□□□ -0.77
VPS53-220ENST00000576149 IDH3AP50213 366 aa10.26□□□□□ -0.77
VPS53-220ENST00000576149 SLC5A3P53794 718 aa10.26□□□□□ -0.77
VPS53-220ENST00000576149 CLNS1AP54105 237 aaKnown RBP10.26□□□□□ -0.77
VPS53-220ENST00000576149 IRF9Q00978 393 aa10.26□□□□□ -0.77
VPS53-220ENST00000576149 TSPY1Q01534 308 aa10.26□□□□□ -0.77
VPS53-220ENST00000576149 DLG2Q15700 870 aa10.26□□□□□ -0.77
VPS53-220ENST00000576149 DNAL1Q4LDG9 190 aa10.26□□□□□ -0.77
VPS53-220ENST00000576149 ARTNQ5T4W7 220 aa10.26□□□□□ -0.77
VPS53-220ENST00000576149 PDPK2PQ6A1A2 396 aa10.26□□□□□ -0.77
VPS53-220ENST00000576149 RGMBQ6NW40 437 aa10.26□□□□□ -0.77
VPS53-220ENST00000576149 ATPAF2Q8N5M1 289 aa10.26□□□□□ -0.77
VPS53-220ENST00000576149 LZTR1Q8N653 840 aa10.26□□□□□ -0.77
VPS53-220ENST00000576149 SPATA22Q8NHS9 363 aa10.26□□□□□ -0.77
VPS53-220ENST00000576149 USP33Q8TEY7 942 aa10.26□□□□□ -0.77
VPS53-220ENST00000576149 SUSD3Q96L08 255 aa10.26□□□□□ -0.77
VPS53-220ENST00000576149 FCRL5Q96RD9 977 aa10.26□□□□□ -0.77
VPS53-220ENST00000576149 IL12RB2Q99665 862 aa10.26□□□□□ -0.77
VPS53-220ENST00000576149 SMOC2Q9H3U7 446 aa10.26□□□□□ -0.77
VPS53-220ENST00000576149 NSMCE4AQ9NXX6 385 aa10.26□□□□□ -0.77
VPS53-220ENST00000576149 PCDHB12Q9Y5F1 795 aa10.26□□□□□ -0.77
VPS53-220ENST00000576149 MAFKO60675 156 aa10.25□□□□□ -0.77
VPS53-220ENST00000576149 TM7SF2O76062 418 aa10.25□□□□□ -0.77
VPS53-220ENST00000576149 KLHL2O95198 593 aa10.25□□□□□ -0.77
VPS53-220ENST00000576149 PSMG1O95456 288 aa10.25□□□□□ -0.77
VPS53-220ENST00000576149 MYL4P12829 197 aa10.25□□□□□ -0.77
VPS53-220ENST00000576149 TYMPP19971 482 aa10.25□□□□□ -0.77
VPS53-220ENST00000576149 YY1P25490 414 aa10.25□□□□□ -0.77
VPS53-220ENST00000576149 CCR1P32246 355 aa10.25□□□□□ -0.77
VPS53-220ENST00000576149 GCKP35557 465 aa10.25□□□□□ -0.77
VPS53-220ENST00000576149 SATB1Q01826 763 aa10.25□□□□□ -0.77
VPS53-220ENST00000576149 TAF11Q15544 211 aa10.25□□□□□ -0.77
VPS53-220ENST00000576149 BTBD8Q5XKL5 378 aa10.25□□□□□ -0.77
VPS53-220ENST00000576149 SPATA2LQ8IUW3 424 aaPredicted RBP10.25□□□□□ -0.77
VPS53-220ENST00000576149 ACVR1CQ8NER5 493 aa10.25□□□□□ -0.77
VPS53-220ENST00000576149 CASP10Q92851 521 aa10.25□□□□□ -0.77
VPS53-220ENST00000576149 CCDC97Q96F63 343 aaPredicted RBP10.25□□□□□ -0.77
VPS53-220ENST00000576149 ZNF419Q96HQ0 510 aaPredicted RBP10.25□□□□□ -0.77
VPS53-220ENST00000576149 NAF1Q96HR8 494 aaKnown RBP10.25□□□□□ -0.77
VPS53-220ENST00000576149 FAM161BQ96MY7 647 aa10.25□□□□□ -0.77
VPS53-220ENST00000576149 GPR22Q99680 433 aa10.25□□□□□ -0.77
VPS53-220ENST00000576149 CATSPERBQ9H7T0 1116 aa10.25□□□□□ -0.77
VPS53-220ENST00000576149 STOML1Q9UBI4 398 aa10.25□□□□□ -0.77
VPS53-220ENST00000576149 SFMBT1Q9UHJ3 866 aa10.25□□□□□ -0.77
VPS53-220ENST00000576149 SEC23IPQ9Y6Y8 1000 aaKnown RBP10.25□□□□□ -0.77
VPS53-220ENST00000576149 ARHGEF37A1IGU5 675 aa10.25□□□□□ -0.77
VPS53-220ENST00000576149 F8W810 466 aa10.25□□□□□ -0.77
VPS53-220ENST00000576149 F8W8V4 182 aa10.25□□□□□ -0.77
VPS53-220ENST00000576149 GOLGA8TH3BQL2 631 aa10.25□□□□□ -0.77
VPS53-220ENST00000576149 MATN3O15232 486 aa10.25□□□□□ -0.77
VPS53-220ENST00000576149 SIN3BO75182 1162 aa10.25□□□□□ -0.77
VPS53-220ENST00000576149 KRT36O76013 467 aa10.25□□□□□ -0.77
VPS53-220ENST00000576149 ANXA9O76027 345 aa10.25□□□□□ -0.77
VPS53-220ENST00000576149 MT-CYBP00156 380 aaPredicted RBP10.25□□□□□ -0.77
VPS53-220ENST00000576149 PGFP49763 221 aa10.25□□□□□ -0.77
VPS53-220ENST00000576149 PPP2R5DQ14738 602 aa10.25□□□□□ -0.77
VPS53-220ENST00000576149 GRM3Q14832 879 aa10.25□□□□□ -0.77
VPS53-220ENST00000576149 RCN1Q15293 331 aa10.25□□□□□ -0.77
VPS53-220ENST00000576149 ANO4Q32M45 955 aa10.25□□□□□ -0.77
VPS53-220ENST00000576149 PCID2Q5JVF3 399 aa10.25□□□□□ -0.77
VPS53-220ENST00000576149 PKN3Q6P5Z2 889 aa10.25□□□□□ -0.77
VPS53-220ENST00000576149 NAPRTQ6XQN6 538 aa10.25□□□□□ -0.77
VPS53-220ENST00000576149 C11orf96Q7Z7L8 435 aa10.25□□□□□ -0.77
VPS53-220ENST00000576149 SCD5Q86SK9 330 aa10.25□□□□□ -0.77
VPS53-220ENST00000576149 SAPCD2Q86UD0 394 aa10.25□□□□□ -0.77
VPS53-220ENST00000576149 ZNF598Q86UK7 904 aaKnown RBP10.25□□□□□ -0.77
VPS53-220ENST00000576149 ZC3HC1Q86WB0 502 aaKnown RBP10.25□□□□□ -0.77
VPS53-220ENST00000576149 SCUBE1Q8IWY4 988 aa10.25□□□□□ -0.77
VPS53-220ENST00000576149 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP10.25□□□□□ -0.77
VPS53-220ENST00000576149 FCRL2Q96LA5 508 aaPredicted RBP10.25□□□□□ -0.77
VPS53-220ENST00000576149 TBL1YQ9BQ87 522 aa10.25□□□□□ -0.77
VPS53-220ENST00000576149 SLC39A8Q9C0K1 460 aa10.25□□□□□ -0.77
VPS53-220ENST00000576149 RHOJQ9H4E5 214 aa10.25□□□□□ -0.77
VPS53-220ENST00000576149 CXorf56Q9H5V9 222 aa10.25□□□□□ -0.77
VPS53-220ENST00000576149 NMRAL1Q9HBL8 299 aa10.25□□□□□ -0.77
VPS53-220ENST00000576149 GLOD4Q9HC38 313 aa10.25□□□□□ -0.77
VPS53-220ENST00000576149 GABRQQ9UN88 632 aa10.25□□□□□ -0.77
VPS53-220ENST00000576149 NUP205Q92621 2012 aa10.25□□□□□ -0.77
VPS53-220ENST00000576149 PALM2-AKAP2B1ALY0 433 aaPredicted RBP10.24□□□□□ -0.77
VPS53-220ENST00000576149 TMEM114B3SHH9 223 aa10.24□□□□□ -0.77
VPS53-220ENST00000576149 INPPL1O15357 1258 aa10.24□□□□□ -0.77
VPS53-220ENST00000576149 MSI1O43347 362 aaKnown RBP10.24□□□□□ -0.77
VPS53-220ENST00000576149 TRIM13O60858 407 aa10.24□□□□□ -0.77
VPS53-220ENST00000576149 SLC10A3P09131 477 aa10.24□□□□□ -0.77
VPS53-220ENST00000576149 SKIP12755 728 aa10.24□□□□□ -0.77
VPS53-220ENST00000576149 CPOXP36551 454 aa10.24□□□□□ -0.77
VPS53-220ENST00000576149 GRIK1P39086 918 aa10.24□□□□□ -0.77
VPS53-220ENST00000576149 THOC5Q13769 683 aaKnown RBP10.24□□□□□ -0.77
VPS53-220ENST00000576149 KCNA10Q16322 511 aa10.24□□□□□ -0.77
VPS53-220ENST00000576149 CMPK2Q5EBM0 449 aa10.24□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms