RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 PLSCR4Q9NRQ2 329 aa3.13□□□□□ -1.91
VPS35-207ENST00000568191 CDH22Q9UJ99 828 aa3.13□□□□□ -1.91
VPS35-207ENST00000568191 CKAP5Q14008 2032 aa3.12□□□□□ -1.91
VPS35-207ENST00000568191 IFITM10A6NMD0 228 aa3.12□□□□□ -1.91
VPS35-207ENST00000568191 STRNO43815 780 aa3.12□□□□□ -1.91
VPS35-207ENST00000568191 SERPINI2O75830 405 aa3.12□□□□□ -1.91
VPS35-207ENST00000568191 ACTL6BO94805 426 aa3.12□□□□□ -1.91
VPS35-207ENST00000568191 DAOP14920 347 aa3.12□□□□□ -1.91
VPS35-207ENST00000568191 PRPH2P23942 346 aa3.12□□□□□ -1.91
VPS35-207ENST00000568191 PPM1AP35813 382 aa3.12□□□□□ -1.91
VPS35-207ENST00000568191 AMTP48728 403 aa3.12□□□□□ -1.91
VPS35-207ENST00000568191 PEX5P50542 639 aa3.12□□□□□ -1.91
VPS35-207ENST00000568191 FAM3BP58499 235 aaPredicted RBP3.12□□□□□ -1.91
VPS35-207ENST00000568191 KRTAP10-6P60371 365 aaPredicted RBP3.12□□□□□ -1.91
VPS35-207ENST00000568191 AP2B1P63010 937 aa3.12□□□□□ -1.91
VPS35-207ENST00000568191 ABATP80404 500 aa3.12□□□□□ -1.91
VPS35-207ENST00000568191 GOLGA8FQ08AF8 430 aa3.12□□□□□ -1.91
VPS35-207ENST00000568191 KIF19Q2TAC6 998 aa3.12□□□□□ -1.91
VPS35-207ENST00000568191 GXYLT1Q4G148 440 aa3.12□□□□□ -1.91
VPS35-207ENST00000568191 GFI1BQ5VTD9 330 aa3.12□□□□□ -1.91
VPS35-207ENST00000568191 GGT6Q6P531 493 aa3.12□□□□□ -1.91
VPS35-207ENST00000568191 NEK10Q6ZWH5 1172 aa3.12□□□□□ -1.91
VPS35-207ENST00000568191 CUZD1Q86UP6 607 aa3.12□□□□□ -1.91
VPS35-207ENST00000568191 TMC8Q8IU68 726 aa3.12□□□□□ -1.91
VPS35-207ENST00000568191 VPS52Q8N1B4 723 aa3.12□□□□□ -1.91
VPS35-207ENST00000568191 GALNT15Q8N3T1 639 aa3.12□□□□□ -1.91
VPS35-207ENST00000568191 TCP11L2Q8N4U5 519 aa3.12□□□□□ -1.91
VPS35-207ENST00000568191 FSIP1Q8NA03 581 aa3.12□□□□□ -1.91
VPS35-207ENST00000568191 LMO3Q8TAP4 145 aa3.12□□□□□ -1.91
VPS35-207ENST00000568191 CEP76Q8TAP6 659 aa3.12□□□□□ -1.91
VPS35-207ENST00000568191 FAR1Q8WVX9 515 aa3.12□□□□□ -1.91
VPS35-207ENST00000568191 NR4A3Q92570 626 aa3.12□□□□□ -1.91
VPS35-207ENST00000568191 C3orf49Q96BT1 292 aa3.12□□□□□ -1.91
VPS35-207ENST00000568191 C18orf8Q96DM3 657 aa3.12□□□□□ -1.91
VPS35-207ENST00000568191 LTV1Q96GA3 475 aaPredicted RBP3.12□□□□□ -1.91
VPS35-207ENST00000568191 APOLD1Q96LR9 279 aa3.12□□□□□ -1.91
VPS35-207ENST00000568191 TEFMQ96QE5 360 aaKnown RBP3.12□□□□□ -1.91
VPS35-207ENST00000568191 ELAC2Q9BQ52 826 aaKnown RBP3.12□□□□□ -1.91
VPS35-207ENST00000568191 KATNAL1Q9BW62 490 aa3.12□□□□□ -1.91
VPS35-207ENST00000568191 KLHL31Q9H511 634 aa3.12□□□□□ -1.91
VPS35-207ENST00000568191 ARNT2Q9HBZ2 717 aa3.12□□□□□ -1.91
VPS35-207ENST00000568191 SEL1LQ9UBV2 794 aa3.12□□□□□ -1.91
VPS35-207ENST00000568191 LOC102724159A0A0B4J2E5 919 aa3.11□□□□□ -1.91
VPS35-207ENST00000568191 PLSCR5A0PG75 271 aa3.11□□□□□ -1.91
VPS35-207ENST00000568191 FAM90A18PA6NE21 464 aa3.11□□□□□ -1.91
VPS35-207ENST00000568191 FAM90A16PA6NEW6 464 aa3.11□□□□□ -1.91
VPS35-207ENST00000568191 AQP12BA6NM10 295 aa3.11□□□□□ -1.91
VPS35-207ENST00000568191 FAM90A9PA6NNJ1 464 aa3.11□□□□□ -1.91
VPS35-207ENST00000568191 FAM90A5PA8MXJ8 464 aa3.11□□□□□ -1.91
VPS35-207ENST00000568191 I6L893 689 aaPredicted RBP3.11□□□□□ -1.91
VPS35-207ENST00000568191 GRM8O00222 908 aa3.11□□□□□ -1.91
VPS35-207ENST00000568191 HSPB6O14558 160 aa3.11□□□□□ -1.91
VPS35-207ENST00000568191 SYN3O14994 580 aa3.11□□□□□ -1.91
VPS35-207ENST00000568191 SLC16A5O15375 505 aa3.11□□□□□ -1.91
VPS35-207ENST00000568191 LINC01565O15544 149 aa3.11□□□□□ -1.91
VPS35-207ENST00000568191 ZNF432O94892 652 aa3.11□□□□□ -1.91
VPS35-207ENST00000568191 FAM90A15PP0C7V4 464 aa3.11□□□□□ -1.91
VPS35-207ENST00000568191 FAM90A14PP0C7W9 464 aa3.11□□□□□ -1.91
VPS35-207ENST00000568191 FCGR2AP12318 317 aa3.11□□□□□ -1.91
VPS35-207ENST00000568191 CYP4B1P13584 511 aa3.11□□□□□ -1.91
VPS35-207ENST00000568191 YWHAQP27348 245 aa3.11□□□□□ -1.91
VPS35-207ENST00000568191 SERPINA4P29622 427 aa3.11□□□□□ -1.91
VPS35-207ENST00000568191 GPR12P47775 334 aa3.11□□□□□ -1.91
VPS35-207ENST00000568191 TRAF1Q13077 416 aa3.11□□□□□ -1.91
VPS35-207ENST00000568191 PWP2Q15269 919 aaKnown RBP3.11□□□□□ -1.91
VPS35-207ENST00000568191 MTFR2Q6P444 385 aa3.11□□□□□ -1.91
VPS35-207ENST00000568191 Q6ZSV7 163 aa3.11□□□□□ -1.91
VPS35-207ENST00000568191 GALNT7Q86SF2 657 aa3.11□□□□□ -1.91
VPS35-207ENST00000568191 RBM23Q86U06 439 aaKnown RBP3.11□□□□□ -1.91
VPS35-207ENST00000568191 SERPINA11Q86U17 422 aa3.11□□□□□ -1.91
VPS35-207ENST00000568191 SLC44A2Q8IWA5 706 aaPredicted RBP3.11□□□□□ -1.91
VPS35-207ENST00000568191 CLIP4Q8N3C7 705 aa3.11□□□□□ -1.91
VPS35-207ENST00000568191 ZBTB8BQ8NAP8 495 aaPredicted RBP3.11□□□□□ -1.91
VPS35-207ENST00000568191 HDAC7Q8WUI4 952 aa3.11□□□□□ -1.91
VPS35-207ENST00000568191 STYXQ8WUJ0 223 aa3.11□□□□□ -1.91
VPS35-207ENST00000568191 ARRDC3Q96B67 414 aa3.11□□□□□ -1.91
VPS35-207ENST00000568191 RETREG1Q9H6L5 497 aa3.11□□□□□ -1.91
VPS35-207ENST00000568191 Q9N2J8 555 aa3.11□□□□□ -1.91
VPS35-207ENST00000568191 OBP2BQ9NPH6 170 aa3.11□□□□□ -1.91
VPS35-207ENST00000568191 TMEM248Q9NWD8 314 aa3.11□□□□□ -1.91
VPS35-207ENST00000568191 PAM16Q9Y3D7 125 aa3.11□□□□□ -1.91
VPS35-207ENST00000568191 MST1RQ04912 1400 aa3.1□□□□□ -1.91
VPS35-207ENST00000568191 A0A096LPK6 155 aa3.1□□□□□ -1.91
VPS35-207ENST00000568191 TNNT1P13805 278 aa3.1□□□□□ -1.91
VPS35-207ENST00000568191 GNLYP22749 145 aa3.1□□□□□ -1.91
VPS35-207ENST00000568191 C21orf33P30042 268 aaPredicted RBP3.1□□□□□ -1.91
VPS35-207ENST00000568191 PPP3CCP48454 512 aa3.1□□□□□ -1.91
VPS35-207ENST00000568191 PMS2P54278 862 aa3.1□□□□□ -1.91
VPS35-207ENST00000568191 TBX4P57082 545 aa3.1□□□□□ -1.91
VPS35-207ENST00000568191 TNFAIP2Q03169 654 aa3.1□□□□□ -1.91
VPS35-207ENST00000568191 ICA1Q05084 483 aa3.1□□□□□ -1.91
VPS35-207ENST00000568191 ZBTB16Q05516 673 aa3.1□□□□□ -1.91
VPS35-207ENST00000568191 PFKFB4Q16877 469 aa3.1□□□□□ -1.91
VPS35-207ENST00000568191 KRTAP27-1Q3LI81 207 aa3.1□□□□□ -1.91
VPS35-207ENST00000568191 MAP9Q49MG5 647 aa3.1□□□□□ -1.91
VPS35-207ENST00000568191 DCAF6Q58WW2 860 aa3.1□□□□□ -1.91
VPS35-207ENST00000568191 RUNDC3AQ59EK9 446 aa3.1□□□□□ -1.91
VPS35-207ENST00000568191 DGAT2L7PQ6IED9 249 aa3.1□□□□□ -1.91
VPS35-207ENST00000568191 TMEM71Q6P5X7 295 aa3.1□□□□□ -1.91
VPS35-207ENST00000568191 GSG1LQ6UXU4 331 aa3.1□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms