RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 IPMKQ8NFU5 416 aa20.64■□□□□ 0.89
CLN3-230ENST00000568076 MAGEC3Q8TD91 643 aa20.64■□□□□ 0.89
CLN3-230ENST00000568076 CASD1Q96PB1 797 aa20.64■□□□□ 0.89
CLN3-230ENST00000568076 CAB39LQ9H9S4 337 aa20.64■□□□□ 0.89
CLN3-230ENST00000568076 THAP1Q9NVV9 213 aa20.64■□□□□ 0.89
CLN3-230ENST00000568076 MARCH5Q9NX47 278 aa20.64■□□□□ 0.89
CLN3-230ENST00000568076 LNPEPQ9UIQ6 1025 aa20.64■□□□□ 0.89
CLN3-230ENST00000568076 HBS1LQ9Y450 684 aaKnown RBP20.64■□□□□ 0.89
CLN3-230ENST00000568076 AP3B1O00203 1094 aa20.63■□□□□ 0.89
CLN3-230ENST00000568076 TBX4P57082 545 aa20.63■□□□□ 0.89
CLN3-230ENST00000568076 MPP3Q13368 585 aa20.63■□□□□ 0.89
CLN3-230ENST00000568076 DLG2Q15700 870 aa20.63■□□□□ 0.89
CLN3-230ENST00000568076 ATG14Q6ZNE5 492 aa20.63■□□□□ 0.89
CLN3-230ENST00000568076 CRLF3Q8IUI8 442 aa20.63■□□□□ 0.89
CLN3-230ENST00000568076 PLD6Q8N2A8 252 aaKnown RBP20.63■□□□□ 0.89
CLN3-230ENST00000568076 DBF4BQ8NFT6 615 aa20.63■□□□□ 0.89
CLN3-230ENST00000568076 PTCD3Q96EY7 689 aaKnown RBP20.63■□□□□ 0.89
CLN3-230ENST00000568076 TBC1D10AQ9BXI6 508 aa20.63■□□□□ 0.89
CLN3-230ENST00000568076 CRISPLD1Q9H336 500 aa20.63■□□□□ 0.89
CLN3-230ENST00000568076 CREBZFQ9NS37 354 aa20.63■□□□□ 0.89
CLN3-230ENST00000568076 RBM22Q9NW64 420 aaKnown RBP eCLIP20.63■□□□□ 0.89
CLN3-230ENST00000568076 FAM92AA1XBS5 289 aa20.63■□□□□ 0.89
CLN3-230ENST00000568076 LYPLA1O75608 230 aaPredicted RBP20.63■□□□□ 0.89
CLN3-230ENST00000568076 COL6A1P12109 1028 aa20.63■□□□□ 0.89
CLN3-230ENST00000568076 ADRA1AP35348 466 aa20.63■□□□□ 0.89
CLN3-230ENST00000568076 SERPINB8P50452 374 aa20.63■□□□□ 0.89
CLN3-230ENST00000568076 ZBTB16Q05516 673 aa20.63■□□□□ 0.89
CLN3-230ENST00000568076 EFEMP1Q12805 493 aa20.63■□□□□ 0.89
CLN3-230ENST00000568076 MS4A13Q5J8X5 152 aa20.63■□□□□ 0.89
CLN3-230ENST00000568076 RSPO2Q6UXX9 243 aaPredicted RBP20.63■□□□□ 0.89
CLN3-230ENST00000568076 C10orf107Q8IVU9 208 aa20.63■□□□□ 0.89
CLN3-230ENST00000568076 RAB3IPQ96QF0 476 aaPredicted RBP20.63■□□□□ 0.89
CLN3-230ENST00000568076 FICDQ9BVA6 458 aa20.63■□□□□ 0.89
CLN3-230ENST00000568076 CFHR5Q9BXR6 569 aa20.63■□□□□ 0.89
CLN3-230ENST00000568076 NMUR2Q9GZQ4 415 aa20.63■□□□□ 0.89
CLN3-230ENST00000568076 ELAC1Q9H777 363 aaKnown RBP20.63■□□□□ 0.89
CLN3-230ENST00000568076 HMX1Q9NP08 348 aaPredicted RBP20.63■□□□□ 0.89
CLN3-230ENST00000568076 PRDM5Q9NQX1 630 aaPredicted RBP20.63■□□□□ 0.89
CLN3-230ENST00000568076 ANXA9O76027 345 aa20.62■□□□□ 0.89
CLN3-230ENST00000568076 VNN2O95498 520 aa20.62■□□□□ 0.89
CLN3-230ENST00000568076 PEX11BO96011 259 aa20.62■□□□□ 0.89
CLN3-230ENST00000568076 ARPP19P56211 112 aa20.62■□□□□ 0.89
CLN3-230ENST00000568076 TCTN1Q2MV58 587 aa20.62■□□□□ 0.89
CLN3-230ENST00000568076 ICE2Q659A1 982 aa20.62■□□□□ 0.89
CLN3-230ENST00000568076 TIGD7Q6NT04 549 aaPredicted RBP20.62■□□□□ 0.89
CLN3-230ENST00000568076 COPG2Q9UBF2 871 aa20.62■□□□□ 0.89
CLN3-230ENST00000568076 IPO11Q9UI26 975 aaKnown RBP20.62■□□□□ 0.89
CLN3-230ENST00000568076 SLC27A5Q9Y2P5 690 aa20.62■□□□□ 0.89
CLN3-230ENST00000568076 FCHO1O14526 889 aa20.61■□□□□ 0.89
CLN3-230ENST00000568076 FGFR3P22607 806 aa20.61■□□□□ 0.89
CLN3-230ENST00000568076 DNAJB2P25686 324 aa20.61■□□□□ 0.89
CLN3-230ENST00000568076 PTPN4P29074 926 aa20.61■□□□□ 0.89
CLN3-230ENST00000568076 SLC11A1P49279 550 aa20.61■□□□□ 0.89
CLN3-230ENST00000568076 CSE1LP55060 971 aaKnown RBP20.61■□□□□ 0.89
CLN3-230ENST00000568076 AQP5P55064 265 aa20.61■□□□□ 0.89
CLN3-230ENST00000568076 IRF9Q00978 393 aa20.61■□□□□ 0.89
CLN3-230ENST00000568076 POU6F1Q14863 301 aa20.61■□□□□ 0.89
CLN3-230ENST00000568076 PSMD5Q16401 504 aa20.61■□□□□ 0.89
CLN3-230ENST00000568076 DEFB115Q30KQ5 88 aa20.61■□□□□ 0.89
CLN3-230ENST00000568076 PCID2Q5JVF3 399 aa20.61■□□□□ 0.89
CLN3-230ENST00000568076 ZNF280DQ6N043 979 aa20.61■□□□□ 0.89
CLN3-230ENST00000568076 PKN3Q6P5Z2 889 aa20.61■□□□□ 0.89
CLN3-230ENST00000568076 CCDC91Q7Z6B0 441 aa20.61■□□□□ 0.89
CLN3-230ENST00000568076 TFAP2DQ7Z6R9 452 aa20.61■□□□□ 0.89
CLN3-230ENST00000568076 ABI1Q8IZP0 508 aa20.61■□□□□ 0.89
CLN3-230ENST00000568076 ARHGAP18Q8N392 663 aa20.61■□□□□ 0.89
CLN3-230ENST00000568076 DDX51Q8N8A6 666 aaKnown RBP eCLIP20.61■□□□□ 0.89
CLN3-230ENST00000568076 PPP1R14CQ8TAE6 165 aa20.61■□□□□ 0.89
CLN3-230ENST00000568076 PCDHB7Q9Y5E2 793 aa20.61■□□□□ 0.89
CLN3-230ENST00000568076 OR6C75A6NL08 312 aa20.61■□□□□ 0.89
CLN3-230ENST00000568076 CNTN5O94779 1100 aa20.61■□□□□ 0.89
CLN3-230ENST00000568076 SLC2A3P11169 496 aa20.61■□□□□ 0.89
CLN3-230ENST00000568076 YWHAQP27348 245 aa20.61■□□□□ 0.89
CLN3-230ENST00000568076 ARRB2P32121 409 aa20.61■□□□□ 0.89
CLN3-230ENST00000568076 RASSF2P50749 326 aa20.61■□□□□ 0.89
CLN3-230ENST00000568076 GEMP55040 296 aa20.61■□□□□ 0.89
CLN3-230ENST00000568076 CDK18Q07002 472 aa20.61■□□□□ 0.89
CLN3-230ENST00000568076 ALFQ53S48 1182 aa20.61■□□□□ 0.89
CLN3-230ENST00000568076 CLEC14AQ86T13 490 aa20.61■□□□□ 0.89
CLN3-230ENST00000568076 LONP2Q86WA8 852 aa20.61■□□□□ 0.89
CLN3-230ENST00000568076 UMODL1-AS1Q8N2C9 162 aa20.61■□□□□ 0.89
CLN3-230ENST00000568076 AGAP11Q8TF27 550 aa20.61■□□□□ 0.89
CLN3-230ENST00000568076 FBXO32Q969P5 355 aa20.61■□□□□ 0.89
CLN3-230ENST00000568076 VPS39Q96JC1 886 aa20.61■□□□□ 0.89
CLN3-230ENST00000568076 MRGPRX2Q96LB1 330 aa20.61■□□□□ 0.89
CLN3-230ENST00000568076 MIPEPQ99797 713 aa20.61■□□□□ 0.89
CLN3-230ENST00000568076 GPBP1L1Q9HC44 474 aaPredicted RBP20.61■□□□□ 0.89
CLN3-230ENST00000568076 ARMCX1Q9P291 453 aa20.61■□□□□ 0.89
CLN3-230ENST00000568076 PHF24Q9UPV7 400 aa20.61■□□□□ 0.89
CLN3-230ENST00000568076 BPTFQ12830 3046 aa20.6■□□□□ 0.89
CLN3-230ENST00000568076 FNDC1Q4ZHG4 1894 aaPredicted RBP20.6■□□□□ 0.89
CLN3-230ENST00000568076 A0A096LPK6 155 aa20.6■□□□□ 0.89
CLN3-230ENST00000568076 MTMR11A4FU01 709 aa20.6■□□□□ 0.89
CLN3-230ENST00000568076 PMPCBO75439 489 aa20.6■□□□□ 0.89
CLN3-230ENST00000568076 PBX3P40426 434 aa20.6■□□□□ 0.89
CLN3-230ENST00000568076 CSRP3P50461 194 aa20.6■□□□□ 0.89
CLN3-230ENST00000568076 CDK7P50613 346 aa20.6■□□□□ 0.89
CLN3-230ENST00000568076 RASIP1Q5U651 963 aa20.6■□□□□ 0.89
CLN3-230ENST00000568076 PDPK2PQ6A1A2 396 aa20.6■□□□□ 0.89
CLN3-230ENST00000568076 LRRC49Q8IUZ0 686 aa20.6■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms