RNA–Protein interactions for RNA: ENST00000567992.1

CLK3-220, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 603 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-220ENST00000567992 ERCC2P18074 760 aa10.01□□□□□ -0.81
CLK3-220ENST00000567992 ETFBP38117 255 aa10.01□□□□□ -0.81
CLK3-220ENST00000567992 PTGER3P43115 390 aa10.01□□□□□ -0.81
CLK3-220ENST00000567992 MAGEA1P43355 309 aa10.01□□□□□ -0.81
CLK3-220ENST00000567992 CLCN6P51797 869 aa10.01□□□□□ -0.81
CLK3-220ENST00000567992 ZNF135P52742 658 aaPredicted RBP10.01□□□□□ -0.81
CLK3-220ENST00000567992 METAP1P53582 386 aa10.01□□□□□ -0.81
CLK3-220ENST00000567992 HADHBP55084 474 aaKnown RBP10.01□□□□□ -0.81
CLK3-220ENST00000567992 YBEYP58557 167 aaPredicted RBP10.01□□□□□ -0.81
CLK3-220ENST00000567992 ZBTB16Q05516 673 aa10.01□□□□□ -0.81
CLK3-220ENST00000567992 SERINC3Q13530 473 aa10.01□□□□□ -0.81
CLK3-220ENST00000567992 BYSLQ13895 437 aaKnown RBP10.01□□□□□ -0.81
CLK3-220ENST00000567992 ELAVL3Q14576 367 aaKnown RBP10.01□□□□□ -0.81
CLK3-220ENST00000567992 POLD3Q15054 466 aaPredicted RBP10.01□□□□□ -0.81
CLK3-220ENST00000567992 CST6Q15828 149 aa10.01□□□□□ -0.81
CLK3-220ENST00000567992 PARP15Q460N3 678 aa10.01□□□□□ -0.81
CLK3-220ENST00000567992 ATP13A4Q4VNC1 1196 aa10.01□□□□□ -0.81
CLK3-220ENST00000567992 ZNF776Q68DI1 518 aaPredicted RBP10.01□□□□□ -0.81
CLK3-220ENST00000567992 IL31Q6EBC2 164 aa10.01□□□□□ -0.81
CLK3-220ENST00000567992 RETSATQ6NUM9 610 aa10.01□□□□□ -0.81
CLK3-220ENST00000567992 TMTC1Q8IUR5 882 aa10.01□□□□□ -0.81
CLK3-220ENST00000567992 MMAAQ8IVH4 418 aaKnown RBP10.01□□□□□ -0.81
CLK3-220ENST00000567992 TP53INP2Q8IXH6 220 aa10.01□□□□□ -0.81
CLK3-220ENST00000567992 RHOT2Q8IXI1 618 aa10.01□□□□□ -0.81
CLK3-220ENST00000567992 AADATQ8N5Z0 425 aa10.01□□□□□ -0.81
CLK3-220ENST00000567992 ATP11CQ8NB49 1132 aa10.01□□□□□ -0.81
CLK3-220ENST00000567992 NETO2Q8NC67 525 aa10.01□□□□□ -0.81
CLK3-220ENST00000567992 OR2A12Q8NGT7 310 aa10.01□□□□□ -0.81
CLK3-220ENST00000567992 HSPH1Q92598 858 aa10.01□□□□□ -0.81
CLK3-220ENST00000567992 FAM131CQ96AQ9 280 aa10.01□□□□□ -0.81
CLK3-220ENST00000567992 CELF6Q96J87 481 aaKnown RBP10.01□□□□□ -0.81
CLK3-220ENST00000567992 LOXL4Q96JB6 756 aa10.01□□□□□ -0.81
CLK3-220ENST00000567992 CSPG4P5Q96PW8 444 aa10.01□□□□□ -0.81
CLK3-220ENST00000567992 PABPC3Q9H361 631 aaKnown RBP10.01□□□□□ -0.81
CLK3-220ENST00000567992 PDFQ9HBH1 243 aa10.01□□□□□ -0.81
CLK3-220ENST00000567992 ETNK2Q9NVF9 386 aa10.01□□□□□ -0.81
CLK3-220ENST00000567992 KLHL11Q9NVR0 708 aa10.01□□□□□ -0.81
CLK3-220ENST00000567992 WSB2Q9NYS7 404 aaPredicted RBP10.01□□□□□ -0.81
CLK3-220ENST00000567992 SERGEFQ9UGK8 458 aa10.01□□□□□ -0.81
CLK3-220ENST00000567992 LCMT1Q9UIC8 334 aa10.01□□□□□ -0.81
CLK3-220ENST00000567992 SALL4Q9UJQ4 1053 aa10.01□□□□□ -0.81
CLK3-220ENST00000567992 SARDHQ9UL12 918 aa10.01□□□□□ -0.81
CLK3-220ENST00000567992 PCDHA13Q9Y5I0 950 aa10.01□□□□□ -0.81
CLK3-220ENST00000567992 EPN1Q9Y6I3 576 aaPredicted RBP10.01□□□□□ -0.81
CLK3-220ENST00000567992 CEP250Q9BV73 2442 aa10□□□□□ -0.81
CLK3-220ENST00000567992 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa10□□□□□ -0.81
CLK3-220ENST00000567992 H3BRJ5 948 aa10□□□□□ -0.81
CLK3-220ENST00000567992 MCF2LO15068 1137 aa10□□□□□ -0.81
CLK3-220ENST00000567992 ALOX15BO15296 676 aa10□□□□□ -0.81
CLK3-220ENST00000567992 MID1O15344 667 aa10□□□□□ -0.81
CLK3-220ENST00000567992 ZBTB24O43167 697 aaPredicted RBP10□□□□□ -0.81
CLK3-220ENST00000567992 CD6P30203 668 aa10□□□□□ -0.81
CLK3-220ENST00000567992 DRD3P35462 400 aa10□□□□□ -0.81
CLK3-220ENST00000567992 CYLC1P35663 651 aaPredicted RBP10□□□□□ -0.81
CLK3-220ENST00000567992 NNMTP40261 264 aa10□□□□□ -0.81
CLK3-220ENST00000567992 ARHGAP25P42331 645 aa10□□□□□ -0.81
CLK3-220ENST00000567992 PSMD8P48556 350 aa10□□□□□ -0.81
CLK3-220ENST00000567992 NDST2P52849 883 aa10□□□□□ -0.81
CLK3-220ENST00000567992 RPL6Q02878 288 aaKnown RBP10□□□□□ -0.81
CLK3-220ENST00000567992 DPYSL3Q14195 570 aa10□□□□□ -0.81
CLK3-220ENST00000567992 MESDQ14696 234 aa10□□□□□ -0.81
CLK3-220ENST00000567992 ELF2Q15723 593 aa10□□□□□ -0.81
CLK3-220ENST00000567992 SPDYCQ5MJ68 293 aa10□□□□□ -0.81
CLK3-220ENST00000567992 PLA2G2CQ5R387 149 aa10□□□□□ -0.81
CLK3-220ENST00000567992 PEAR1Q5VY43 1037 aaPredicted RBP10□□□□□ -0.81
CLK3-220ENST00000567992 LEKR1Q6ZMV7 388 aa10□□□□□ -0.81
CLK3-220ENST00000567992 SLC41A1Q8IVJ1 513 aa10□□□□□ -0.81
CLK3-220ENST00000567992 TMEFF1Q8IYR6 380 aa10□□□□□ -0.81
CLK3-220ENST00000567992 CHST14Q8NCH0 376 aa10□□□□□ -0.81
CLK3-220ENST00000567992 ACRBPQ8NEB7 543 aa10□□□□□ -0.81
CLK3-220ENST00000567992 TOE1Q96GM8 510 aaKnown RBP10□□□□□ -0.81
CLK3-220ENST00000567992 BAG1Q99933 345 aaPredicted RBP10□□□□□ -0.81
CLK3-220ENST00000567992 CEP44Q9C0F1 390 aa10□□□□□ -0.81
CLK3-220ENST00000567992 SLC39A8Q9C0K1 460 aa10□□□□□ -0.81
CLK3-220ENST00000567992 TNKS2Q9H2K2 1166 aa10□□□□□ -0.81
CLK3-220ENST00000567992 NCDNQ9UBB6 729 aa10□□□□□ -0.81
CLK3-220ENST00000567992 GMEB2Q9UKD1 530 aa10□□□□□ -0.81
CLK3-220ENST00000567992 RAB23Q9ULC3 237 aa10□□□□□ -0.81
CLK3-220ENST00000567992 PPM1HQ9ULR3 514 aa10□□□□□ -0.81
CLK3-220ENST00000567992 FCF1Q9Y324 198 aaKnown RBP10□□□□□ -0.81
CLK3-220ENST00000567992 PCDH15Q96QU1 1955 aa10□□□□□ -0.81
CLK3-220ENST00000567992 RALGAPA1Q6GYQ0 2036 aa10□□□□□ -0.81
CLK3-220ENST00000567992 SPTBN4Q9H254 2564 aa10□□□□□ -0.81
CLK3-220ENST00000567992 A0A0A6YYK5 440 aaPredicted RBP9.99□□□□□ -0.81
CLK3-220ENST00000567992 BCLAF3A2AJT9 711 aaKnown RBP9.99□□□□□ -0.81
CLK3-220ENST00000567992 TMEM110-MUSTN1A8MSY1 372 aa9.99□□□□□ -0.81
CLK3-220ENST00000567992 J3KR12 359 aa9.99□□□□□ -0.81
CLK3-220ENST00000567992 BUB1BO60566 1050 aaPredicted RBP9.99□□□□□ -0.81
CLK3-220ENST00000567992 RHOBTB1O94844 696 aa9.99□□□□□ -0.81
CLK3-220ENST00000567992 DNTTP04053 509 aa9.99□□□□□ -0.81
CLK3-220ENST00000567992 AMPD1P23109 780 aa9.99□□□□□ -0.81
CLK3-220ENST00000567992 OXTRP30559 389 aa9.99□□□□□ -0.81
CLK3-220ENST00000567992 ACSL1P33121 698 aa9.99□□□□□ -0.81
CLK3-220ENST00000567992 GJC1P36383 396 aa9.99□□□□□ -0.81
CLK3-220ENST00000567992 CDH6P55285 790 aa9.99□□□□□ -0.81
CLK3-220ENST00000567992 SLC20A2Q08357 652 aa9.99□□□□□ -0.81
CLK3-220ENST00000567992 SPEM2Q0P670 501 aa9.99□□□□□ -0.81
CLK3-220ENST00000567992 MMRN1Q13201 1228 aa9.99□□□□□ -0.81
CLK3-220ENST00000567992 SPA17Q15506 151 aa9.99□□□□□ -0.81
CLK3-220ENST00000567992 HADHQ16836 314 aaKnown RBP9.99□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms