RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 Q6ZVU0 165 aa19.97■□□□□ 0.79
CLN3-225ENST00000566824 STK40Q8N2I9 435 aa19.97■□□□□ 0.79
CLN3-225ENST00000566824 PGBD3Q8N328 593 aa19.97■□□□□ 0.79
CLN3-225ENST00000566824 ATP11CQ8NB49 1132 aa19.97■□□□□ 0.79
CLN3-225ENST00000566824 TNKS2Q9H2K2 1166 aa19.97■□□□□ 0.79
CLN3-225ENST00000566824 BCCIPQ9P287 314 aaKnown RBP eCLIP19.97■□□□□ 0.79
CLN3-225ENST00000566824 RCOR3Q9P2K3 495 aaPredicted RBP19.97■□□□□ 0.79
CLN3-225ENST00000566824 SUN2Q9UH99 717 aa19.97■□□□□ 0.79
CLN3-225ENST00000566824 FCF1Q9Y324 198 aaKnown RBP19.97■□□□□ 0.79
CLN3-225ENST00000566824 SDK1Q7Z5N4 2213 aa19.97■□□□□ 0.79
CLN3-225ENST00000566824 NUMA1Q14980 2115 aa19.97■□□□□ 0.79
CLN3-225ENST00000566824 DMDP11532 3685 aa19.96■□□□□ 0.79
CLN3-225ENST00000566824 WDR87Q6ZQQ6 2873 aa19.96■□□□□ 0.79
CLN3-225ENST00000566824 EDDM13A0A1B0GTR0 161 aa19.96■□□□□ 0.79
CLN3-225ENST00000566824 RNF103O00237 685 aa19.96■□□□□ 0.79
CLN3-225ENST00000566824 DFFAO00273 331 aa19.96■□□□□ 0.79
CLN3-225ENST00000566824 SERPINH1P50454 418 aaKnown RBP19.96■□□□□ 0.79
CLN3-225ENST00000566824 PARP15Q460N3 678 aa19.96■□□□□ 0.79
CLN3-225ENST00000566824 NCBP2-AS2Q69YL0 99 aa19.96■□□□□ 0.79
CLN3-225ENST00000566824 TMCO3Q6UWJ1 677 aa19.96■□□□□ 0.79
CLN3-225ENST00000566824 MFSD7Q6UXD7 560 aa19.96■□□□□ 0.79
CLN3-225ENST00000566824 ZNF354CQ86Y25 554 aa19.96■□□□□ 0.79
CLN3-225ENST00000566824 TMPRSS6Q8IU80 811 aa19.96■□□□□ 0.79
CLN3-225ENST00000566824 FAM160A2Q8N612 972 aaPredicted RBP19.96■□□□□ 0.79
CLN3-225ENST00000566824 OR2T3Q8NH03 318 aa19.96■□□□□ 0.79
CLN3-225ENST00000566824 ZNF670Q9BS34 389 aa19.96■□□□□ 0.79
CLN3-225ENST00000566824 PDFQ9HBH1 243 aa19.96■□□□□ 0.79
CLN3-225ENST00000566824 GUCA1BQ9UMX6 200 aa19.96■□□□□ 0.79
CLN3-225ENST00000566824 SPAG17Q6Q759 2223 aa19.96■□□□□ 0.79
CLN3-225ENST00000566824 PSTPIP1O43586 416 aa19.95■□□□□ 0.78
CLN3-225ENST00000566824 MFSD11O43934 449 aa19.95■□□□□ 0.78
CLN3-225ENST00000566824 ALDH1A2O94788 518 aa19.95■□□□□ 0.78
CLN3-225ENST00000566824 MAP3K6O95382 1288 aa19.95■□□□□ 0.78
CLN3-225ENST00000566824 ETFBP38117 255 aa19.95■□□□□ 0.78
CLN3-225ENST00000566824 METAP1P53582 386 aa19.95■□□□□ 0.78
CLN3-225ENST00000566824 NRLP54845 237 aa19.95■□□□□ 0.78
CLN3-225ENST00000566824 RPS14P62263 151 aaKnown RBP19.95■□□□□ 0.78
CLN3-225ENST00000566824 NHLH1Q02575 133 aa19.95■□□□□ 0.78
CLN3-225ENST00000566824 E2F5Q15329 346 aa19.95■□□□□ 0.78
CLN3-225ENST00000566824 C22orf39Q6P5X5 142 aa19.95■□□□□ 0.78
CLN3-225ENST00000566824 KIAA1324Q6UXG2 1013 aaKnown RBP19.95■□□□□ 0.78
CLN3-225ENST00000566824 NT5DC3Q86UY8 548 aa19.95■□□□□ 0.78
CLN3-225ENST00000566824 KIAA1524Q8TCG1 905 aa19.95■□□□□ 0.78
CLN3-225ENST00000566824 LRRN4Q8WUT4 740 aa19.95■□□□□ 0.78
CLN3-225ENST00000566824 RNF157Q96PX1 679 aa19.95■□□□□ 0.78
CLN3-225ENST00000566824 FAM126AQ9BYI3 521 aaPredicted RBP19.95■□□□□ 0.78
CLN3-225ENST00000566824 PRDM16Q9HAZ2 1276 aa19.95■□□□□ 0.78
CLN3-225ENST00000566824 LZTFL1Q9NQ48 299 aa19.95■□□□□ 0.78
CLN3-225ENST00000566824 PACSIN2Q9UNF0 486 aaPredicted RBP19.95■□□□□ 0.78
CLN3-225ENST00000566824 PPP2R2CQ9Y2T4 447 aa19.95■□□□□ 0.78
CLN3-225ENST00000566824 PCDHGA2Q9Y5H1 932 aa19.95■□□□□ 0.78
CLN3-225ENST00000566824 GPR179Q6PRD1 2367 aa19.95■□□□□ 0.78
CLN3-225ENST00000566824 CCDC163A0A0D9SF12 145 aa19.94■□□□□ 0.78
CLN3-225ENST00000566824 BNIP3LO60238 219 aa19.94■□□□□ 0.78
CLN3-225ENST00000566824 FTCDO95954 541 aa19.94■□□□□ 0.78
CLN3-225ENST00000566824 PTMAP06454 111 aaKnown RBP19.94■□□□□ 0.78
CLN3-225ENST00000566824 CCDC175P0C221 793 aa19.94■□□□□ 0.78
CLN3-225ENST00000566824 NNMTP40261 264 aa19.94■□□□□ 0.78
CLN3-225ENST00000566824 GBE1Q04446 702 aa19.94■□□□□ 0.78
CLN3-225ENST00000566824 ADCY2Q08462 1091 aa19.94■□□□□ 0.78
CLN3-225ENST00000566824 SLC10A2Q12908 348 aaPredicted RBP19.94■□□□□ 0.78
CLN3-225ENST00000566824 MAP7D1Q3KQU3 841 aa19.94■□□□□ 0.78
CLN3-225ENST00000566824 RETSATQ6NUM9 610 aa19.94■□□□□ 0.78
CLN3-225ENST00000566824 CHST14Q8NCH0 376 aa19.94■□□□□ 0.78
CLN3-225ENST00000566824 ALG3Q92685 438 aa19.94■□□□□ 0.78
CLN3-225ENST00000566824 ANP32BQ92688 251 aaKnown RBP19.94■□□□□ 0.78
CLN3-225ENST00000566824 VOPP1Q96AW1 172 aa19.94■□□□□ 0.78
CLN3-225ENST00000566824 HERPUD2Q9BSE4 406 aa19.94■□□□□ 0.78
CLN3-225ENST00000566824 RSPH9Q9H1X1 276 aaPredicted RBP19.94■□□□□ 0.78
CLN3-225ENST00000566824 DDX56Q9NY93 547 aaKnown RBP19.94■□□□□ 0.78
CLN3-225ENST00000566824 MBD1Q9UIS9 605 aaPredicted RBP19.94■□□□□ 0.78
CLN3-225ENST00000566824 MYO15AQ9UKN7 3530 aa19.94■□□□□ 0.78
CLN3-225ENST00000566824 CEP192Q8TEP8 1941 aa19.94■□□□□ 0.78
CLN3-225ENST00000566824 TARSL2A2RTX5 802 aaKnown RBP19.93■□□□□ 0.78
CLN3-225ENST00000566824 PRAMEF11O60813 436 aa19.93■□□□□ 0.78
CLN3-225ENST00000566824 KRT10P13645 584 aa19.93■□□□□ 0.78
CLN3-225ENST00000566824 BCKDHBP21953 392 aa19.93■□□□□ 0.78
CLN3-225ENST00000566824 CTNNA1P35221 906 aaKnown RBP19.93■□□□□ 0.78
CLN3-225ENST00000566824 CDKN2BP42772 138 aa19.93■□□□□ 0.78
CLN3-225ENST00000566824 PEX5P50542 639 aa19.93■□□□□ 0.78
CLN3-225ENST00000566824 PAFAH1B3Q15102 231 aaKnown RBP19.93■□□□□ 0.78
CLN3-225ENST00000566824 CYTH1Q15438 398 aa19.93■□□□□ 0.78
CLN3-225ENST00000566824 TAZQ16635 292 aa19.93■□□□□ 0.78
CLN3-225ENST00000566824 SPOCD1Q6ZMY3 1216 aa19.93■□□□□ 0.78
CLN3-225ENST00000566824 MAP7D3Q8IWC1 876 aa19.93■□□□□ 0.78
CLN3-225ENST00000566824 KATNAL2Q8IYT4 538 aa19.93■□□□□ 0.78
CLN3-225ENST00000566824 PLD5Q8N7P1 536 aa19.93■□□□□ 0.78
CLN3-225ENST00000566824 OR2A12Q8NGT7 310 aa19.93■□□□□ 0.78
CLN3-225ENST00000566824 SARDHQ9UL12 918 aa19.93■□□□□ 0.78
CLN3-225ENST00000566824 HPCAL4Q9UM19 191 aa19.93■□□□□ 0.78
CLN3-225ENST00000566824 PCDHA3Q9Y5H8 950 aa19.93■□□□□ 0.78
CLN3-225ENST00000566824 THADAQ6YHU6 1953 aa19.93■□□□□ 0.78
CLN3-225ENST00000566824 ARHGAP42A6NI28 874 aa19.92■□□□□ 0.78
CLN3-225ENST00000566824 TMCC1O94876 653 aa19.92■□□□□ 0.78
CLN3-225ENST00000566824 CTSLP07711 333 aa19.92■□□□□ 0.78
CLN3-225ENST00000566824 C7P10643 843 aa19.92■□□□□ 0.78
CLN3-225ENST00000566824 CTNNA2P26232 953 aa19.92■□□□□ 0.78
CLN3-225ENST00000566824 P2RY2P41231 377 aa19.92■□□□□ 0.78
CLN3-225ENST00000566824 NBL1P41271 181 aa19.92■□□□□ 0.78
CLN3-225ENST00000566824 SLC20A2Q08357 652 aa19.92■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 56.2 ms