RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 GLRX5Q86SX6 157 aa15.23■□□□□ 0.03
CLN3-213ENST00000565047 CCDC185Q8N715 623 aa15.23■□□□□ 0.03
CLN3-213ENST00000565047 C3orf20Q8ND61 904 aa15.23■□□□□ 0.03
CLN3-213ENST00000565047 GANCQ8TET4 914 aa15.23■□□□□ 0.03
CLN3-213ENST00000565047 OR8D1Q8WZ84 308 aa15.23■□□□□ 0.03
CLN3-213ENST00000565047 SLC6A18Q96N87 628 aa15.23■□□□□ 0.03
CLN3-213ENST00000565047 C2orf49Q9BVC5 232 aaPredicted RBP15.23■□□□□ 0.03
CLN3-213ENST00000565047 ZYG11BQ9C0D3 744 aa15.23■□□□□ 0.03
CLN3-213ENST00000565047 MUC3BQ9H195 1237 aa15.23■□□□□ 0.03
CLN3-213ENST00000565047 KDM4CQ9H3R0 1056 aa15.23■□□□□ 0.03
CLN3-213ENST00000565047 TM7SF3Q9NS93 570 aa15.23■□□□□ 0.03
CLN3-213ENST00000565047 OR12D3Q9UGF7 316 aa15.23■□□□□ 0.03
CLN3-213ENST00000565047 FAM47DPA6NHR8 397 aa15.22■□□□□ 0.03
CLN3-213ENST00000565047 KCNK3O14649 394 aa15.22■□□□□ 0.03
CLN3-213ENST00000565047 RTN2O75298 545 aa15.22■□□□□ 0.03
CLN3-213ENST00000565047 DKK1O94907 266 aa15.22■□□□□ 0.03
CLN3-213ENST00000565047 RRM1P23921 792 aa15.22■□□□□ 0.03
CLN3-213ENST00000565047 SDC4P31431 198 aa15.22■□□□□ 0.03
CLN3-213ENST00000565047 NSFP46459 744 aaKnown RBP15.22■□□□□ 0.03
CLN3-213ENST00000565047 CLCN6P51797 869 aa15.22■□□□□ 0.03
CLN3-213ENST00000565047 GNA12Q03113 381 aa15.22■□□□□ 0.03
CLN3-213ENST00000565047 C1QBPQ07021 282 aaKnown RBP15.22■□□□□ 0.03
CLN3-213ENST00000565047 CNTN1Q12860 1018 aa15.22■□□□□ 0.03
CLN3-213ENST00000565047 SHBQ15464 509 aa15.22■□□□□ 0.03
CLN3-213ENST00000565047 TRIP6Q15654 476 aaKnown RBP15.22■□□□□ 0.03
CLN3-213ENST00000565047 CDO1Q16878 200 aa15.22■□□□□ 0.03
CLN3-213ENST00000565047 ACCSLQ4AC99 568 aa15.22■□□□□ 0.03
CLN3-213ENST00000565047 PIP5KL1Q5T9C9 394 aa15.22■□□□□ 0.03
CLN3-213ENST00000565047 LINGO4Q6UY18 593 aa15.22■□□□□ 0.03
CLN3-213ENST00000565047 CHST14Q8NCH0 376 aa15.22■□□□□ 0.03
CLN3-213ENST00000565047 OR14C36Q8NHC7 312 aa15.22■□□□□ 0.03
CLN3-213ENST00000565047 PIP4K2CQ8TBX8 421 aa15.22■□□□□ 0.03
CLN3-213ENST00000565047 NTAN1Q96AB6 310 aa15.22■□□□□ 0.03
CLN3-213ENST00000565047 PCMTD1Q96MG8 357 aaPredicted RBP15.22■□□□□ 0.03
CLN3-213ENST00000565047 NAP1L5Q96NT1 182 aaPredicted RBP15.22■□□□□ 0.03
CLN3-213ENST00000565047 SCNM1Q9BWG6 230 aa15.22■□□□□ 0.03
CLN3-213ENST00000565047 RETREG1Q9H6L5 497 aa15.22■□□□□ 0.03
CLN3-213ENST00000565047 TOR4AQ9NXH8 423 aa15.22■□□□□ 0.03
CLN3-213ENST00000565047 TAS2R14Q9NYV8 317 aa15.22■□□□□ 0.03
CLN3-213ENST00000565047 MYO6Q9UM54 1294 aa15.22■□□□□ 0.03
CLN3-213ENST00000565047 KNL1Q8NG31 2342 aa15.22■□□□□ 0.03
CLN3-213ENST00000565047 CHD5Q8TDI0 1954 aa15.22■□□□□ 0.03
CLN3-213ENST00000565047 MAP1BP46821 2468 aaKnown RBP15.21■□□□□ 0.03
CLN3-213ENST00000565047 CXorf51AA0A1B0GTR3 108 aa15.21■□□□□ 0.03
CLN3-213ENST00000565047 H0Y8X5 98 aa15.21■□□□□ 0.03
CLN3-213ENST00000565047 LRIG2O94898 1065 aa15.21■□□□□ 0.03
CLN3-213ENST00000565047 CALB1P05937 261 aa15.21■□□□□ 0.03
CLN3-213ENST00000565047 RPL7AP62424 266 aaKnown RBP15.21■□□□□ 0.03
CLN3-213ENST00000565047 SCAPQ12770 1279 aa15.21■□□□□ 0.03
CLN3-213ENST00000565047 TEAD4Q15561 434 aa15.21■□□□□ 0.03
CLN3-213ENST00000565047 FAM46CQ5VWP2 391 aa15.21■□□□□ 0.03
CLN3-213ENST00000565047 E4F1Q66K89 784 aaPredicted RBP15.21■□□□□ 0.03
CLN3-213ENST00000565047 ACAD10Q6JQN1 1059 aa15.21■□□□□ 0.03
CLN3-213ENST00000565047 CAVIN1Q6NZI2 390 aaKnown RBP15.21■□□□□ 0.03
CLN3-213ENST00000565047 RAB44Q7Z6P3 723 aaPredicted RBP15.21■□□□□ 0.03
CLN3-213ENST00000565047 ATP11CQ8NB49 1132 aa15.21■□□□□ 0.03
CLN3-213ENST00000565047 TMIEQ8NEW7 156 aa15.21■□□□□ 0.03
CLN3-213ENST00000565047 FAM172AQ8WUF8 416 aa15.21■□□□□ 0.03
CLN3-213ENST00000565047 GATA6Q92908 595 aa15.21■□□□□ 0.03
CLN3-213ENST00000565047 ARRDC3Q96B67 414 aa15.21■□□□□ 0.03
CLN3-213ENST00000565047 TTYH3Q9C0H2 523 aa15.21■□□□□ 0.03
CLN3-213ENST00000565047 NAT10Q9H0A0 1025 aaKnown RBP15.21■□□□□ 0.03
CLN3-213ENST00000565047 TMEM248Q9NWD8 314 aa15.21■□□□□ 0.03
CLN3-213ENST00000565047 TPX2Q9ULW0 747 aaKnown RBP15.21■□□□□ 0.03
CLN3-213ENST00000565047 BTBD3Q9Y2F9 522 aa15.21■□□□□ 0.03
CLN3-213ENST00000565047 ACTL7AQ9Y615 435 aa15.21■□□□□ 0.03
CLN3-213ENST00000565047 AKAP13Q12802 2813 aa15.21■□□□□ 0.03
CLN3-213ENST00000565047 USP24Q9UPU5 2620 aa15.21■□□□□ 0.03
CLN3-213ENST00000565047 TMEM131Q92545 1883 aa15.2■□□□□ 0.02
CLN3-213ENST00000565047 A0A1B0GTH6 734 aa15.2■□□□□ 0.02
CLN3-213ENST00000565047 A0A1W2PQC6 194 aa15.2■□□□□ 0.02
CLN3-213ENST00000565047 HYAL3O43820 417 aaPredicted RBP15.2■□□□□ 0.02
CLN3-213ENST00000565047 PCDHGA12O60330 932 aa15.2■□□□□ 0.02
CLN3-213ENST00000565047 PLEKP08567 350 aaPredicted RBP15.2■□□□□ 0.02
CLN3-213ENST00000565047 FERP16591 822 aa15.2■□□□□ 0.02
CLN3-213ENST00000565047 RHOQP17081 205 aa15.2■□□□□ 0.02
CLN3-213ENST00000565047 GPD1P21695 349 aa15.2■□□□□ 0.02
CLN3-213ENST00000565047 CHRNA3P32297 505 aa15.2■□□□□ 0.02
CLN3-213ENST00000565047 ACVRL1P37023 503 aa15.2■□□□□ 0.02
CLN3-213ENST00000565047 SERPINH1P50454 418 aaKnown RBP15.2■□□□□ 0.02
CLN3-213ENST00000565047 ZNF143P52747 638 aaPredicted RBP15.2■□□□□ 0.02
CLN3-213ENST00000565047 OGDHQ02218 1023 aa15.2■□□□□ 0.02
CLN3-213ENST00000565047 SLC20A2Q08357 652 aa15.2■□□□□ 0.02
CLN3-213ENST00000565047 NR1I3Q14994 352 aa15.2■□□□□ 0.02
CLN3-213ENST00000565047 POM121L1PQ3SYA9 428 aa15.2■□□□□ 0.02
CLN3-213ENST00000565047 C22orf39Q6P5X5 142 aa15.2■□□□□ 0.02
CLN3-213ENST00000565047 DPY19L3Q6ZPD9 716 aa15.2■□□□□ 0.02
CLN3-213ENST00000565047 DSG4Q86SJ6 1040 aa15.2■□□□□ 0.02
CLN3-213ENST00000565047 SLCO6A1Q86UG4 719 aa15.2■□□□□ 0.02
CLN3-213ENST00000565047 TRIM69Q86WT6 500 aa15.2■□□□□ 0.02
CLN3-213ENST00000565047 MCOLN2Q8IZK6 566 aa15.2■□□□□ 0.02
CLN3-213ENST00000565047 ARHGEF2Q92974 986 aaKnown RBP15.2■□□□□ 0.02
CLN3-213ENST00000565047 CEP44Q9C0F1 390 aa15.2■□□□□ 0.02
CLN3-213ENST00000565047 NOL6Q9H6R4 1146 aaKnown RBP15.2■□□□□ 0.02
CLN3-213ENST00000565047 AIPL1Q9NZN9 384 aa15.2■□□□□ 0.02
CLN3-213ENST00000565047 WASF2Q9Y6W5 498 aa15.2■□□□□ 0.02
CLN3-213ENST00000565047 TBC1D3DA0A087WVF3 549 aa15.19■□□□□ 0.02
CLN3-213ENST00000565047 TBC1D3IA0A087WXS9 549 aa15.19■□□□□ 0.02
CLN3-213ENST00000565047 TBC1D3EA0A087X179 549 aa15.19■□□□□ 0.02
CLN3-213ENST00000565047 TBC1D3KA0A087X1G2 549 aa15.19■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms