RNA–Protein interactions for RNA: ENST00000564703.1

RAB40C-208, Transcript of RAB40C, member RAS oncogene family, humanhuman

TSL 3

Gene RAB40C, Length 921 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAB40C-208ENST00000564703 ZRANB2O95218 330 aaKnown RBP eCLIP16.31■□□□□ 0.2
RAB40C-208ENST00000564703 DNTTP04053 509 aa16.31■□□□□ 0.2
RAB40C-208ENST00000564703 KRT1P04264 644 aa16.31■□□□□ 0.2
RAB40C-208ENST00000564703 CD48P09326 243 aa16.31■□□□□ 0.2
RAB40C-208ENST00000564703 SRCP12931 536 aa16.31■□□□□ 0.2
RAB40C-208ENST00000564703 NDUFV2P19404 249 aa16.31■□□□□ 0.2
RAB40C-208ENST00000564703 IL4RP24394 825 aa16.31■□□□□ 0.2
RAB40C-208ENST00000564703 PAPOLAP51003 745 aaKnown RBP16.31■□□□□ 0.2
RAB40C-208ENST00000564703 ARSEP51690 589 aa16.31■□□□□ 0.2
RAB40C-208ENST00000564703 SIM2Q14190 667 aaPredicted RBP16.31■□□□□ 0.2
RAB40C-208ENST00000564703 DPYSL3Q14195 570 aa16.31■□□□□ 0.2
RAB40C-208ENST00000564703 C9orf64Q5T6V5 341 aa16.31■□□□□ 0.2
RAB40C-208ENST00000564703 ZNF776Q68DI1 518 aaPredicted RBP16.31■□□□□ 0.2
RAB40C-208ENST00000564703 C11orf74Q86VG3 221 aa16.31■□□□□ 0.2
RAB40C-208ENST00000564703 RCOR2Q8IZ40 523 aa16.31■□□□□ 0.2
RAB40C-208ENST00000564703 GANCQ8TET4 914 aa16.31■□□□□ 0.2
RAB40C-208ENST00000564703 GAB3Q8WWW8 586 aa16.31■□□□□ 0.2
RAB40C-208ENST00000564703 CASKIN2Q8WXE0 1202 aa16.31■□□□□ 0.2
RAB40C-208ENST00000564703 OR8D1Q8WZ84 308 aa16.31■□□□□ 0.2
RAB40C-208ENST00000564703 RAPGEF5Q92565 580 aa16.31■□□□□ 0.2
RAB40C-208ENST00000564703 TSC1Q92574 1164 aa16.31■□□□□ 0.2
RAB40C-208ENST00000564703 PTPRN2Q92932 1015 aa16.31■□□□□ 0.2
RAB40C-208ENST00000564703 RNF25Q96BH1 459 aaPredicted RBP16.31■□□□□ 0.2
RAB40C-208ENST00000564703 MKRN2Q9H000 416 aaKnown RBP16.31■□□□□ 0.2
RAB40C-208ENST00000564703 NOL6Q9H6R4 1146 aaKnown RBP16.31■□□□□ 0.2
RAB40C-208ENST00000564703 LRRC19Q9H756 370 aa16.31■□□□□ 0.2
RAB40C-208ENST00000564703 FAM86C1Q9NVL1 165 aa16.31■□□□□ 0.2
RAB40C-208ENST00000564703 AMFRQ9UKV5 643 aa16.31■□□□□ 0.2
RAB40C-208ENST00000564703 GUCA1BQ9UMX6 200 aa16.31■□□□□ 0.2
RAB40C-208ENST00000564703 NCKAP1Q9Y2A7 1128 aa16.31■□□□□ 0.2
RAB40C-208ENST00000564703 K7ERQ8 282 aa16.3■□□□□ 0.2
RAB40C-208ENST00000564703 DCLK1O15075 740 aa16.3■□□□□ 0.2
RAB40C-208ENST00000564703 LILRB5O75023 590 aa16.3■□□□□ 0.2
RAB40C-208ENST00000564703 CETN2P41208 172 aa16.3■□□□□ 0.2
RAB40C-208ENST00000564703 SERPINH1P50454 418 aaKnown RBP16.3■□□□□ 0.2
RAB40C-208ENST00000564703 ARF5P84085 180 aa16.3■□□□□ 0.2
RAB40C-208ENST00000564703 CCZ1BP86790 482 aa16.3■□□□□ 0.2
RAB40C-208ENST00000564703 CCZ1P86791 482 aaPredicted RBP16.3■□□□□ 0.2
RAB40C-208ENST00000564703 ZBTB16Q05516 673 aa16.3■□□□□ 0.2
RAB40C-208ENST00000564703 ELAVL3Q14576 367 aaKnown RBP16.3■□□□□ 0.2
RAB40C-208ENST00000564703 INO80DQ53TQ3 878 aaPredicted RBP16.3■□□□□ 0.2
RAB40C-208ENST00000564703 PRR23BQ6ZRT6 265 aa16.3■□□□□ 0.2
RAB40C-208ENST00000564703 VSIG1Q86XK7 387 aa16.3■□□□□ 0.2
RAB40C-208ENST00000564703 LRRC49Q8IUZ0 686 aa16.3■□□□□ 0.2
RAB40C-208ENST00000564703 STK40Q8N2I9 435 aa16.3■□□□□ 0.2
RAB40C-208ENST00000564703 PCDH20Q8N6Y1 951 aaKnown RBP16.3■□□□□ 0.2
RAB40C-208ENST00000564703 FRS2Q8WU20 508 aa16.3■□□□□ 0.2
RAB40C-208ENST00000564703 NSMCE1Q8WV22 266 aa16.3■□□□□ 0.2
RAB40C-208ENST00000564703 RLN3Q8WXF3 142 aa16.3■□□□□ 0.2
RAB40C-208ENST00000564703 RNF157Q96PX1 679 aa16.3■□□□□ 0.2
RAB40C-208ENST00000564703 CEP44Q9C0F1 390 aa16.3■□□□□ 0.2
RAB40C-208ENST00000564703 GOLPH3Q9H4A6 298 aa16.3■□□□□ 0.2
RAB40C-208ENST00000564703 SP110Q9HB58 689 aa16.3■□□□□ 0.2
RAB40C-208ENST00000564703 ITM2CQ9NQX7 267 aa16.3■□□□□ 0.2
RAB40C-208ENST00000564703 SCML1Q9UN30 329 aa16.3■□□□□ 0.2
RAB40C-208ENST00000564703 INVSQ9Y283 1065 aa16.3■□□□□ 0.2
RAB40C-208ENST00000564703 ZNF487B1APH4 448 aa16.29■□□□□ 0.2
RAB40C-208ENST00000564703 MCF2LO15068 1137 aa16.29■□□□□ 0.2
RAB40C-208ENST00000564703 SMAD6O43541 496 aaKnown RBP16.29■□□□□ 0.2
RAB40C-208ENST00000564703 PALMO75781 387 aa16.29■□□□□ 0.2
RAB40C-208ENST00000564703 IL1BP01584 269 aa16.29■□□□□ 0.2
RAB40C-208ENST00000564703 ZFXP17010 805 aaPredicted RBP16.29■□□□□ 0.2
RAB40C-208ENST00000564703 NBL1P41271 181 aa16.29■□□□□ 0.2
RAB40C-208ENST00000564703 COPAP53621 1224 aa16.29■□□□□ 0.2
RAB40C-208ENST00000564703 SNRPD1P62314 119 aaKnown RBP16.29■□□□□ 0.2
RAB40C-208ENST00000564703 NHLH1Q02575 133 aa16.29■□□□□ 0.2
RAB40C-208ENST00000564703 TTC31Q49AM3 519 aaPredicted RBP16.29■□□□□ 0.2
RAB40C-208ENST00000564703 FAM46CQ5VWP2 391 aa16.29■□□□□ 0.2
RAB40C-208ENST00000564703 SLC36A4Q6YBV0 504 aa16.29■□□□□ 0.2
RAB40C-208ENST00000564703 LEKR1Q6ZMV7 388 aa16.29■□□□□ 0.2
RAB40C-208ENST00000564703 Q6ZVU0 165 aa16.29■□□□□ 0.2
RAB40C-208ENST00000564703 PEX26Q7Z412 305 aa16.29■□□□□ 0.2
RAB40C-208ENST00000564703 RFX6Q8HWS3 928 aa16.29■□□□□ 0.2
RAB40C-208ENST00000564703 MMAAQ8IVH4 418 aaKnown RBP16.29■□□□□ 0.2
RAB40C-208ENST00000564703 CCDC50Q8IVM0 306 aa16.29■□□□□ 0.2
RAB40C-208ENST00000564703 RYBPQ8N488 228 aaPredicted RBP16.29■□□□□ 0.2
RAB40C-208ENST00000564703 PCDH19Q8TAB3 1148 aa16.29■□□□□ 0.2
RAB40C-208ENST00000564703 UBE2Q2Q8WVN8 375 aa16.29■□□□□ 0.2
RAB40C-208ENST00000564703 ISG20Q96AZ6 181 aaKnown RBP16.29■□□□□ 0.2
RAB40C-208ENST00000564703 KLC2Q9H0B6 622 aa16.29■□□□□ 0.2
RAB40C-208ENST00000564703 SLC6A17Q9H1V8 727 aa16.29■□□□□ 0.2
RAB40C-208ENST00000564703 RSPH9Q9H1X1 276 aaPredicted RBP16.29■□□□□ 0.2
RAB40C-208ENST00000564703 CD248Q9HCU0 757 aa16.29■□□□□ 0.2
RAB40C-208ENST00000564703 ETNK2Q9NVF9 386 aa16.29■□□□□ 0.2
RAB40C-208ENST00000564703 UBA2Q9UBT2 640 aaPredicted RBP16.29■□□□□ 0.2
RAB40C-208ENST00000564703 TRIM10Q9UDY6 481 aa16.29■□□□□ 0.2
RAB40C-208ENST00000564703 IPO11Q9UI26 975 aaKnown RBP16.29■□□□□ 0.2
RAB40C-208ENST00000564703 FCF1Q9Y324 198 aaKnown RBP16.29■□□□□ 0.2
RAB40C-208ENST00000564703 CACNA1HO95180 2353 aa16.28■□□□□ 0.2
RAB40C-208ENST00000564703 CCDC66A2RUB6 948 aa16.28■□□□□ 0.2
RAB40C-208ENST00000564703 C1QTNF3-AMACRE9PGA6 284 aa16.28■□□□□ 0.2
RAB40C-208ENST00000564703 ALOX15BO15296 676 aa16.28■□□□□ 0.2
RAB40C-208ENST00000564703 PRAMEF11O60813 436 aa16.28■□□□□ 0.2
RAB40C-208ENST00000564703 NDUFS2O75306 463 aa16.28■□□□□ 0.2
RAB40C-208ENST00000564703 RHOBTB1O94844 696 aa16.28■□□□□ 0.2
RAB40C-208ENST00000564703 VAV1P15498 845 aa16.28■□□□□ 0.2
RAB40C-208ENST00000564703 MX2P20592 715 aa16.28■□□□□ 0.2
RAB40C-208ENST00000564703 OXTRP30559 389 aa16.28■□□□□ 0.2
RAB40C-208ENST00000564703 SLC8A1P32418 973 aa16.28■□□□□ 0.2
RAB40C-208ENST00000564703 P2RY2P41231 377 aa16.28■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms