RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 A0A0D9SEW6 157 aa17.28■□□□□ 0.36
CLN3-211ENST00000564091 KPNA3O00505 521 aaPredicted RBP17.28■□□□□ 0.36
CLN3-211ENST00000564091 SMAD6O43541 496 aaKnown RBP17.28■□□□□ 0.36
CLN3-211ENST00000564091 THEGLP0DJG4 465 aa17.28■□□□□ 0.36
CLN3-211ENST00000564091 RRM1P23921 792 aa17.28■□□□□ 0.36
CLN3-211ENST00000564091 CLCN1P35523 988 aa17.28■□□□□ 0.36
CLN3-211ENST00000564091 KRT83P78385 493 aa17.28■□□□□ 0.36
CLN3-211ENST00000564091 MTA1Q13330 715 aa17.28■□□□□ 0.36
CLN3-211ENST00000564091 ILKQ13418 452 aa17.28■□□□□ 0.36
CLN3-211ENST00000564091 CAMK4Q16566 473 aa17.28■□□□□ 0.36
CLN3-211ENST00000564091 PROX2Q3B8N5 592 aa17.28■□□□□ 0.36
CLN3-211ENST00000564091 LINGO4Q6UY18 593 aa17.28■□□□□ 0.36
CLN3-211ENST00000564091 ZNF683Q8IZ20 524 aa17.28■□□□□ 0.36
CLN3-211ENST00000564091 TMEM145Q8NBT3 493 aa17.28■□□□□ 0.36
CLN3-211ENST00000564091 CHST14Q8NCH0 376 aa17.28■□□□□ 0.36
CLN3-211ENST00000564091 NPY6RQ99463 290 aa17.28■□□□□ 0.36
CLN3-211ENST00000564091 WDCPQ9H6R7 721 aa17.28■□□□□ 0.36
CLN3-211ENST00000564091 FZD3Q9NPG1 666 aa17.28■□□□□ 0.36
CLN3-211ENST00000564091 TMPRSS4Q9NRS4 437 aa17.28■□□□□ 0.36
CLN3-211ENST00000564091 UCKL1Q9NWZ5 548 aa17.28■□□□□ 0.36
CLN3-211ENST00000564091 ARHGEF38Q9NXL2 777 aa17.28■□□□□ 0.36
CLN3-211ENST00000564091 VPS51Q9UID3 782 aa17.28■□□□□ 0.36
CLN3-211ENST00000564091 EIF4E1BA6NMX2 242 aaKnown RBP17.27■□□□□ 0.36
CLN3-211ENST00000564091 ENDOD1O94919 500 aa17.27■□□□□ 0.36
CLN3-211ENST00000564091 EIF2S3P41091 472 aaKnown RBP17.27■□□□□ 0.36
CLN3-211ENST00000564091 CXCR3P49682 368 aa17.27■□□□□ 0.36
CLN3-211ENST00000564091 SULT1E1P49888 294 aa17.27■□□□□ 0.36
CLN3-211ENST00000564091 INSM1Q01101 510 aaPredicted RBP17.27■□□□□ 0.36
CLN3-211ENST00000564091 RTP5Q14D33 572 aa17.27■□□□□ 0.36
CLN3-211ENST00000564091 ZNF284Q2VY69 593 aa17.27■□□□□ 0.36
CLN3-211ENST00000564091 TFAP2DQ7Z6R9 452 aa17.27■□□□□ 0.36
CLN3-211ENST00000564091 ZNF397Q8NF99 534 aaPredicted RBP17.27■□□□□ 0.36
CLN3-211ENST00000564091 C2orf49Q9BVC5 232 aaPredicted RBP17.27■□□□□ 0.36
CLN3-211ENST00000564091 NRSN2Q9GZP1 204 aa17.27■□□□□ 0.36
CLN3-211ENST00000564091 TNKS2Q9H2K2 1166 aa17.27■□□□□ 0.36
CLN3-211ENST00000564091 KLHL11Q9NVR0 708 aa17.27■□□□□ 0.36
CLN3-211ENST00000564091 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP17.27■□□□□ 0.36
CLN3-211ENST00000564091 MPP6Q9NZW5 540 aa17.27■□□□□ 0.36
CLN3-211ENST00000564091 KIAA1468Q9P260 1216 aa17.27■□□□□ 0.36
CLN3-211ENST00000564091 CLCA2Q9UQC9 943 aa17.27■□□□□ 0.36
CLN3-211ENST00000564091 FARP1Q9Y4F1 1045 aaPredicted RBP17.27■□□□□ 0.36
CLN3-211ENST00000564091 RAI2Q9Y5P3 530 aa17.27■□□□□ 0.36
CLN3-211ENST00000564091 TMEM131Q92545 1883 aa17.27■□□□□ 0.35
CLN3-211ENST00000564091 GTPBP10A4D1E9 387 aaKnown RBP17.26■□□□□ 0.35
CLN3-211ENST00000564091 DRGXA6NNA5 263 aa17.26■□□□□ 0.35
CLN3-211ENST00000564091 FFAR2O15552 330 aa17.26■□□□□ 0.35
CLN3-211ENST00000564091 GLDCP23378 1020 aa17.26■□□□□ 0.35
CLN3-211ENST00000564091 DGKAP23743 735 aa17.26■□□□□ 0.35
CLN3-211ENST00000564091 ACP1P24666 158 aa17.26■□□□□ 0.35
CLN3-211ENST00000564091 MTIF2P46199 727 aaKnown RBP17.26■□□□□ 0.35
CLN3-211ENST00000564091 CLDN2P57739 230 aa17.26■□□□□ 0.35
CLN3-211ENST00000564091 SNX16P57768 344 aa17.26■□□□□ 0.35
CLN3-211ENST00000564091 KCNMA1Q12791 1236 aa17.26■□□□□ 0.35
CLN3-211ENST00000564091 ZNF211Q13398 564 aaPredicted RBP17.26■□□□□ 0.35
CLN3-211ENST00000564091 ARSIQ5FYB1 569 aa17.26■□□□□ 0.35
CLN3-211ENST00000564091 BRMS1LQ5PSV4 323 aa17.26■□□□□ 0.35
CLN3-211ENST00000564091 HORMAD1Q86X24 394 aa17.26■□□□□ 0.35
CLN3-211ENST00000564091 TMIEQ8NEW7 156 aa17.26■□□□□ 0.35
CLN3-211ENST00000564091 OR13H1Q8NG92 308 aa17.26■□□□□ 0.35
CLN3-211ENST00000564091 OR7D4Q8NG98 312 aa17.26■□□□□ 0.35
CLN3-211ENST00000564091 GRIN3AQ8TCU5 1115 aa17.26■□□□□ 0.35
CLN3-211ENST00000564091 TBCBQ99426 244 aa17.26■□□□□ 0.35
CLN3-211ENST00000564091 PLXNA2O75051 1894 aa17.25■□□□□ 0.35
CLN3-211ENST00000564091 PCDH8O95206 1070 aa17.25■□□□□ 0.35
CLN3-211ENST00000564091 MYF5P13349 255 aa17.25■□□□□ 0.35
CLN3-211ENST00000564091 DAB2P98082 770 aa17.25■□□□□ 0.35
CLN3-211ENST00000564091 DEUP1Q05D60 604 aa17.25■□□□□ 0.35
CLN3-211ENST00000564091 SEL1L3Q68CR1 1132 aa17.25■□□□□ 0.35
CLN3-211ENST00000564091 NEK5Q6P3R8 708 aa17.25■□□□□ 0.35
CLN3-211ENST00000564091 LRRC31Q6UY01 552 aa17.25■□□□□ 0.35
CLN3-211ENST00000564091 LRRC69Q6ZNQ3 347 aa17.25■□□□□ 0.35
CLN3-211ENST00000564091 ERN2Q76MJ5 926 aaKnown RBP17.25■□□□□ 0.35
CLN3-211ENST00000564091 ZDHHC17Q8IUH5 632 aa17.25■□□□□ 0.35
CLN3-211ENST00000564091 FAM71AQ8IYT1 594 aa17.25■□□□□ 0.35
CLN3-211ENST00000564091 DCAF4L2Q8NA75 395 aa17.25■□□□□ 0.35
CLN3-211ENST00000564091 RFFLQ8WZ73 363 aa17.25■□□□□ 0.35
CLN3-211ENST00000564091 NT5C3BQ969T7 300 aa17.25■□□□□ 0.35
CLN3-211ENST00000564091 CCDC114Q96M63 670 aa17.25■□□□□ 0.35
CLN3-211ENST00000564091 SPON2Q9BUD6 331 aa17.25■□□□□ 0.35
CLN3-211ENST00000564091 CALN1Q9BXU9 219 aa17.25■□□□□ 0.35
CLN3-211ENST00000564091 PDCL3Q9H2J4 239 aa17.25■□□□□ 0.35
CLN3-211ENST00000564091 DYRK4Q9NR20 520 aa17.25■□□□□ 0.35
CLN3-211ENST00000564091 RRN3Q9NYV6 651 aa17.25■□□□□ 0.35
CLN3-211ENST00000564091 STAP1Q9ULZ2 295 aa17.25■□□□□ 0.35
CLN3-211ENST00000564091 ZFR2Q9UPR6 939 aaKnown RBP17.25■□□□□ 0.35
CLN3-211ENST00000564091 RRP8O43159 456 aaKnown RBP17.24■□□□□ 0.35
CLN3-211ENST00000564091 BRINP1O60477 761 aa17.24■□□□□ 0.35
CLN3-211ENST00000564091 SRGAP2O75044 1071 aa17.24■□□□□ 0.35
CLN3-211ENST00000564091 MT-CO3P00414 261 aa17.24■□□□□ 0.35
CLN3-211ENST00000564091 PRNPP04156 253 aa17.24■□□□□ 0.35
CLN3-211ENST00000564091 OR1E1P30953 314 aa17.24■□□□□ 0.35
CLN3-211ENST00000564091 AKT2P31751 481 aa17.24■□□□□ 0.35
CLN3-211ENST00000564091 CCDC15Q0P6D6 951 aa17.24■□□□□ 0.35
CLN3-211ENST00000564091 C2CD6Q53TS8 623 aa17.24■□□□□ 0.35
CLN3-211ENST00000564091 ZNF542PQ5EBM4 170 aa17.24■□□□□ 0.35
CLN3-211ENST00000564091 ARTNQ5T4W7 220 aa17.24■□□□□ 0.35
CLN3-211ENST00000564091 C22orf39Q6P5X5 142 aa17.24■□□□□ 0.35
CLN3-211ENST00000564091 KDM7AQ6ZMT4 941 aa17.24■□□□□ 0.35
CLN3-211ENST00000564091 DPY19L3Q6ZPD9 716 aa17.24■□□□□ 0.35
CLN3-211ENST00000564091 TMC6Q7Z403 805 aa17.24■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 127.2 ms