RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 PACSIN2Q9UNF0 486 aaPredicted RBP10.29□□□□□ -0.76
USP3-216ENST00000559873 FARP1Q9Y4F1 1045 aaPredicted RBP10.29□□□□□ -0.76
USP3-216ENST00000559873 TARSL2A2RTX5 802 aaKnown RBP10.28□□□□□ -0.76
USP3-216ENST00000559873 APOC4-APOC2K7ER74 178 aa10.28□□□□□ -0.76
USP3-216ENST00000559873 SGK1O00141 431 aa10.28□□□□□ -0.76
USP3-216ENST00000559873 DDX3YO15523 660 aaKnown RBP10.28□□□□□ -0.76
USP3-216ENST00000559873 PI15O43692 258 aa10.28□□□□□ -0.76
USP3-216ENST00000559873 ATP9BO43861 1147 aa10.28□□□□□ -0.76
USP3-216ENST00000559873 PRAMEF11O60813 436 aa10.28□□□□□ -0.76
USP3-216ENST00000559873 RNASEH1O60930 286 aaKnown RBP10.28□□□□□ -0.76
USP3-216ENST00000559873 ZMPSTE24O75844 475 aa10.28□□□□□ -0.76
USP3-216ENST00000559873 NEBLO76041 1014 aa10.28□□□□□ -0.76
USP3-216ENST00000559873 APBB3O95704 486 aa10.28□□□□□ -0.76
USP3-216ENST00000559873 APOC2P02655 101 aa10.28□□□□□ -0.76
USP3-216ENST00000559873 SRCP12931 536 aa10.28□□□□□ -0.76
USP3-216ENST00000559873 ACVRL1P37023 503 aa10.28□□□□□ -0.76
USP3-216ENST00000559873 GARSP41250 739 aaKnown RBP10.28□□□□□ -0.76
USP3-216ENST00000559873 CTSOP43234 321 aaPredicted RBP10.28□□□□□ -0.76
USP3-216ENST00000559873 STK19P49842 368 aaPredicted RBP10.28□□□□□ -0.76
USP3-216ENST00000559873 PAPOLAP51003 745 aaKnown RBP10.28□□□□□ -0.76
USP3-216ENST00000559873 GBE1Q04446 702 aa10.28□□□□□ -0.76
USP3-216ENST00000559873 ZNF33AQ06730 810 aa10.28□□□□□ -0.76
USP3-216ENST00000559873 GALNT2Q10471 571 aa10.28□□□□□ -0.76
USP3-216ENST00000559873 SFSWAPQ12872 951 aaKnown RBP10.28□□□□□ -0.76
USP3-216ENST00000559873 ELAVL3Q14576 367 aaKnown RBP10.28□□□□□ -0.76
USP3-216ENST00000559873 PDK1Q15118 436 aa10.28□□□□□ -0.76
USP3-216ENST00000559873 INO80DQ53TQ3 878 aaPredicted RBP10.28□□□□□ -0.76
USP3-216ENST00000559873 EMC10Q5UCC4 262 aa10.28□□□□□ -0.76
USP3-216ENST00000559873 C22orf39Q6P5X5 142 aa10.28□□□□□ -0.76
USP3-216ENST00000559873 BBS12Q6ZW61 710 aa10.28□□□□□ -0.76
USP3-216ENST00000559873 C1orf210Q8IVY1 113 aa10.28□□□□□ -0.76
USP3-216ENST00000559873 SFTPA1Q8IWL2 248 aa10.28□□□□□ -0.76
USP3-216ENST00000559873 ARHGAP12Q8IWW6 846 aa10.28□□□□□ -0.76
USP3-216ENST00000559873 CAMKK1Q8N5S9 505 aa10.28□□□□□ -0.76
USP3-216ENST00000559873 PCDH20Q8N6Y1 951 aaKnown RBP10.28□□□□□ -0.76
USP3-216ENST00000559873 PLD5Q8N7P1 536 aa10.28□□□□□ -0.76
USP3-216ENST00000559873 TTC13Q8NBP0 860 aa10.28□□□□□ -0.76
USP3-216ENST00000559873 MAIP1Q8WWC4 291 aa10.28□□□□□ -0.76
USP3-216ENST00000559873 P3H4Q92791 437 aa10.28□□□□□ -0.76
USP3-216ENST00000559873 HAUS1Q96CS2 278 aa10.28□□□□□ -0.76
USP3-216ENST00000559873 RPL10LQ96L21 214 aaKnown RBP10.28□□□□□ -0.76
USP3-216ENST00000559873 MRGPRX3Q96LB0 322 aa10.28□□□□□ -0.76
USP3-216ENST00000559873 CINPQ9BW66 212 aaPredicted RBP10.28□□□□□ -0.76
USP3-216ENST00000559873 KLC2Q9H0B6 622 aa10.28□□□□□ -0.76
USP3-216ENST00000559873 TMEM245Q9H330 911 aa10.28□□□□□ -0.76
USP3-216ENST00000559873 NOL6Q9H6R4 1146 aaKnown RBP10.28□□□□□ -0.76
USP3-216ENST00000559873 ETNK2Q9NVF9 386 aa10.28□□□□□ -0.76
USP3-216ENST00000559873 BCCIPQ9P287 314 aaKnown RBP eCLIP10.28□□□□□ -0.76
USP3-216ENST00000559873 IPO11Q9UI26 975 aaKnown RBP10.28□□□□□ -0.76
USP3-216ENST00000559873 FBXO4Q9UKT5 387 aa10.28□□□□□ -0.76
USP3-216ENST00000559873 HEY1Q9Y5J3 304 aa10.28□□□□□ -0.76
USP3-216ENST00000559873 MUC22E2RYF6 1773 aaPredicted RBP10.28□□□□□ -0.76
USP3-216ENST00000559873 TCRBV21S2A2A0A5A6 115 aa10.27□□□□□ -0.77
USP3-216ENST00000559873 USP27XA6NNY8 438 aa10.27□□□□□ -0.77
USP3-216ENST00000559873 MCF2LO15068 1137 aa10.27□□□□□ -0.77
USP3-216ENST00000559873 ALOX15BO15296 676 aa10.27□□□□□ -0.77
USP3-216ENST00000559873 ADAM23O75077 832 aa10.27□□□□□ -0.77
USP3-216ENST00000559873 IGSF6O95976 241 aa10.27□□□□□ -0.77
USP3-216ENST00000559873 PYGMP11217 842 aa10.27□□□□□ -0.77
USP3-216ENST00000559873 KRT10P13645 584 aa10.27□□□□□ -0.77
USP3-216ENST00000559873 GLDCP23378 1020 aa10.27□□□□□ -0.77
USP3-216ENST00000559873 PRKCHP24723 683 aa10.27□□□□□ -0.77
USP3-216ENST00000559873 HSPA9P38646 679 aaKnown RBP10.27□□□□□ -0.77
USP3-216ENST00000559873 WASP42768 502 aa10.27□□□□□ -0.77
USP3-216ENST00000559873 MAPK8P45983 427 aa10.27□□□□□ -0.77
USP3-216ENST00000559873 NUMBP49757 651 aa10.27□□□□□ -0.77
USP3-216ENST00000559873 RENBPP51606 427 aa10.27□□□□□ -0.77
USP3-216ENST00000559873 RHOAP61586 193 aa10.27□□□□□ -0.77
USP3-216ENST00000559873 GNG11P61952 73 aa10.27□□□□□ -0.77
USP3-216ENST00000559873 SNRPD1P62314 119 aaKnown RBP10.27□□□□□ -0.77
USP3-216ENST00000559873 ZNF235Q14590 738 aa10.27□□□□□ -0.77
USP3-216ENST00000559873 DLG2Q15700 870 aa10.27□□□□□ -0.77
USP3-216ENST00000559873 TTC31Q49AM3 519 aaPredicted RBP10.27□□□□□ -0.77
USP3-216ENST00000559873 LINGO4Q6UY18 593 aa10.27□□□□□ -0.77
USP3-216ENST00000559873 SLC35F6Q8N357 371 aa10.27□□□□□ -0.77
USP3-216ENST00000559873 FATE1Q969F0 183 aa10.27□□□□□ -0.77
USP3-216ENST00000559873 ISG20Q96AZ6 181 aaKnown RBP10.27□□□□□ -0.77
USP3-216ENST00000559873 HDAC11Q96DB2 347 aa10.27□□□□□ -0.77
USP3-216ENST00000559873 GDAP1L1Q96MZ0 367 aa10.27□□□□□ -0.77
USP3-216ENST00000559873 ACOX2Q99424 681 aa10.27□□□□□ -0.77
USP3-216ENST00000559873 LRFN3Q9BTN0 628 aa10.27□□□□□ -0.77
USP3-216ENST00000559873 FAM126AQ9BYI3 521 aaPredicted RBP10.27□□□□□ -0.77
USP3-216ENST00000559873 PDFQ9HBH1 243 aa10.27□□□□□ -0.77
USP3-216ENST00000559873 ZDHHC4Q9NPG8 344 aa10.27□□□□□ -0.77
USP3-216ENST00000559873 PRMT8Q9NR22 394 aaPredicted RBP10.27□□□□□ -0.77
USP3-216ENST00000559873 DTLQ9NZJ0 730 aa10.27□□□□□ -0.77
USP3-216ENST00000559873 SEPT3Q9UH03 358 aa10.27□□□□□ -0.77
USP3-216ENST00000559873 ZKSCAN5Q9Y2L8 839 aa10.27□□□□□ -0.77
USP3-216ENST00000559873 CHD5Q8TDI0 1954 aa10.26□□□□□ -0.77
USP3-216ENST00000559873 TTC34A8MYJ7 566 aa10.26□□□□□ -0.77
USP3-216ENST00000559873 C1QTNF3-AMACRE9PGA6 284 aa10.26□□□□□ -0.77
USP3-216ENST00000559873 MTSS1O43312 755 aa10.26□□□□□ -0.77
USP3-216ENST00000559873 GALR2O43603 387 aaPredicted RBP10.26□□□□□ -0.77
USP3-216ENST00000559873 SIN3BO75182 1162 aa10.26□□□□□ -0.77
USP3-216ENST00000559873 TMCC1O94876 653 aa10.26□□□□□ -0.77
USP3-216ENST00000559873 GSRP00390 522 aa10.26□□□□□ -0.77
USP3-216ENST00000559873 CHRM1P11229 460 aaPredicted RBP10.26□□□□□ -0.77
USP3-216ENST00000559873 HLA-EP13747 358 aa10.26□□□□□ -0.77
USP3-216ENST00000559873 CCNCP24863 283 aa10.26□□□□□ -0.77
USP3-216ENST00000559873 NRLP54845 237 aa10.26□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms