RNA–Protein interactions for RNA: ENST00000559711.5

USP3-213, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5 BASIC

Gene USP3, Length 1,693 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-213ENST00000559711 SMYD2Q9NRG4 433 aa12.93□□□□□ -0.34
USP3-213ENST00000559711 PIH1D1Q9NWS0 290 aaKnown RBP12.93□□□□□ -0.34
USP3-213ENST00000559711 SYBUQ9NX95 663 aa12.93□□□□□ -0.34
USP3-213ENST00000559711 TMEM120BA0PK00 339 aa12.92□□□□□ -0.34
USP3-213ENST00000559711 CXorf49A8MYA2 514 aaPredicted RBP12.92□□□□□ -0.34
USP3-213ENST00000559711 GFRA2O00451 464 aa12.92□□□□□ -0.34
USP3-213ENST00000559711 RB1P06400 928 aa12.92□□□□□ -0.34
USP3-213ENST00000559711 INHBAP08476 426 aa12.92□□□□□ -0.34
USP3-213ENST00000559711 KRT15P19012 456 aa12.92□□□□□ -0.34
USP3-213ENST00000559711 ADRA1AP35348 466 aa12.92□□□□□ -0.34
USP3-213ENST00000559711 ACVRL1P37023 503 aa12.92□□□□□ -0.34
USP3-213ENST00000559711 CLCN4P51793 760 aa12.92□□□□□ -0.34
USP3-213ENST00000559711 RPS24P62847 133 aaKnown RBP12.92□□□□□ -0.34
USP3-213ENST00000559711 SLC7A9P82251 487 aa12.92□□□□□ -0.34
USP3-213ENST00000559711 SLC10A7Q0GE19 358 aa12.92□□□□□ -0.34
USP3-213ENST00000559711 CDH17Q12864 832 aa12.92□□□□□ -0.34
USP3-213ENST00000559711 MPP2Q14168 576 aa12.92□□□□□ -0.34
USP3-213ENST00000559711 CRYMQ14894 314 aa12.92□□□□□ -0.34
USP3-213ENST00000559711 TTC39BQ5VTQ0 682 aaPredicted RBP12.92□□□□□ -0.34
USP3-213ENST00000559711 ZNF449Q6P9G9 518 aa12.92□□□□□ -0.34
USP3-213ENST00000559711 TRMT10BQ6PF06 316 aaKnown RBP12.92□□□□□ -0.34
USP3-213ENST00000559711 Q6ZNB5 142 aa12.92□□□□□ -0.34
USP3-213ENST00000559711 TMEM135Q86UB9 458 aa12.92□□□□□ -0.34
USP3-213ENST00000559711 HS6ST3Q8IZP7 471 aa12.92□□□□□ -0.34
USP3-213ENST00000559711 ELMOD1Q8N336 334 aa12.92□□□□□ -0.34
USP3-213ENST00000559711 ARL14EPQ8N8R7 260 aaPredicted RBP12.92□□□□□ -0.34
USP3-213ENST00000559711 DNAAF3Q8N9W5 541 aa12.92□□□□□ -0.34
USP3-213ENST00000559711 NSMCE1Q8WV22 266 aa12.92□□□□□ -0.34
USP3-213ENST00000559711 ATXN2LQ8WWM7 1075 aaKnown RBP12.92□□□□□ -0.34
USP3-213ENST00000559711 ZNF599Q96NL3 588 aa12.92□□□□□ -0.34
USP3-213ENST00000559711 IL22Q9GZX6 179 aa12.92□□□□□ -0.34
USP3-213ENST00000559711 EPN3Q9H201 632 aa12.92□□□□□ -0.34
USP3-213ENST00000559711 TRABDQ9H4I3 376 aa12.92□□□□□ -0.34
USP3-213ENST00000559711 SP110Q9HB58 689 aa12.92□□□□□ -0.34
USP3-213ENST00000559711 TRPC7Q9HCX4 862 aa12.92□□□□□ -0.34
USP3-213ENST00000559711 SSU72Q9NP77 194 aaKnown RBP12.92□□□□□ -0.34
USP3-213ENST00000559711 TLR9Q9NR96 1032 aa12.92□□□□□ -0.34
USP3-213ENST00000559711 UBP1Q9NZI7 540 aa12.92□□□□□ -0.34
USP3-213ENST00000559711 TBC1D30Q9Y2I9 924 aa12.92□□□□□ -0.34
USP3-213ENST00000559711 IKBKGQ9Y6K9 419 aa12.92□□□□□ -0.34
USP3-213ENST00000559711 NUP205Q92621 2012 aa12.92□□□□□ -0.34
USP3-213ENST00000559711 IQANK1A0A1B0GTG1 560 aa12.91□□□□□ -0.34
USP3-213ENST00000559711 ILVBLA1L0T0 632 aa12.91□□□□□ -0.34
USP3-213ENST00000559711 PRPF4O43172 522 aaKnown RBP eCLIP12.91□□□□□ -0.34
USP3-213ENST00000559711 FAM155BO75949 473 aa12.91□□□□□ -0.34
USP3-213ENST00000559711 NEBLO76041 1014 aa12.91□□□□□ -0.34
USP3-213ENST00000559711 MT-CYBP00156 380 aaPredicted RBP12.91□□□□□ -0.34
USP3-213ENST00000559711 POLBP06746 335 aa12.91□□□□□ -0.34
USP3-213ENST00000559711 IRF1P10914 325 aa12.91□□□□□ -0.34
USP3-213ENST00000559711 PFKLP17858 780 aa12.91□□□□□ -0.34
USP3-213ENST00000559711 CDC25CP30307 473 aa12.91□□□□□ -0.34
USP3-213ENST00000559711 ZXDBP98169 803 aa12.91□□□□□ -0.34
USP3-213ENST00000559711 GNA12Q03113 381 aa12.91□□□□□ -0.34
USP3-213ENST00000559711 MPP3Q13368 585 aa12.91□□□□□ -0.34
USP3-213ENST00000559711 SPANXN3Q5MJ09 141 aa12.91□□□□□ -0.34
USP3-213ENST00000559711 PLPP4Q5VZY2 271 aa12.91□□□□□ -0.34
USP3-213ENST00000559711 DENND5AQ6IQ26 1287 aa12.91□□□□□ -0.34
USP3-213ENST00000559711 RANBP10Q6VN20 620 aa12.91□□□□□ -0.34
USP3-213ENST00000559711 SETD3Q86TU7 594 aaPredicted RBP12.91□□□□□ -0.34
USP3-213ENST00000559711 CCDC117Q8IWD4 279 aaPredicted RBP12.91□□□□□ -0.34
USP3-213ENST00000559711 PPM1NQ8N819 430 aa12.91□□□□□ -0.34
USP3-213ENST00000559711 TADA1Q96BN2 335 aa12.91□□□□□ -0.34
USP3-213ENST00000559711 IMP4Q96G21 291 aaKnown RBP12.91□□□□□ -0.34
USP3-213ENST00000559711 TBL1YQ9BQ87 522 aa12.91□□□□□ -0.34
USP3-213ENST00000559711 LBHD1Q9BQE6 289 aaPredicted RBP12.91□□□□□ -0.34
USP3-213ENST00000559711 C17orf80Q9BSJ5 609 aa12.91□□□□□ -0.34
USP3-213ENST00000559711 HTATIP2Q9BUP3 242 aa12.91□□□□□ -0.34
USP3-213ENST00000559711 CCDC134Q9H6E4 229 aa12.91□□□□□ -0.34
USP3-213ENST00000559711 PDFQ9HBH1 243 aa12.91□□□□□ -0.34
USP3-213ENST00000559711 INTS9Q9NV88 658 aaKnown RBP12.91□□□□□ -0.34
USP3-213ENST00000559711 SMPD4Q9NXE4 827 aa12.91□□□□□ -0.34
USP3-213ENST00000559711 SAMD15Q9P1V8 674 aa12.91□□□□□ -0.34
USP3-213ENST00000559711 KIAA1671Q9BY89 1806 aa12.91□□□□□ -0.34
USP3-213ENST00000559711 LAMA2P24043 3122 aaKnown RBP12.9□□□□□ -0.34
USP3-213ENST00000559711 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP12.9□□□□□ -0.34
USP3-213ENST00000559711 A0A0D9SEW6 157 aa12.9□□□□□ -0.34
USP3-213ENST00000559711 FAM237BA0A1B0GVD1 139 aa12.9□□□□□ -0.34
USP3-213ENST00000559711 A0A1B0GVM2 712 aa12.9□□□□□ -0.34
USP3-213ENST00000559711 A0A1W2PPM1 405 aa12.9□□□□□ -0.34
USP3-213ENST00000559711 TCAF2A6NFQ2 919 aa12.9□□□□□ -0.34
USP3-213ENST00000559711 HOXD9P28356 352 aaPredicted RBP12.9□□□□□ -0.34
USP3-213ENST00000559711 SGSHP51688 502 aa12.9□□□□□ -0.34
USP3-213ENST00000559711 PPARDQ03181 441 aa12.9□□□□□ -0.34
USP3-213ENST00000559711 NIPAL4Q0D2K0 466 aa12.9□□□□□ -0.34
USP3-213ENST00000559711 ZNF177Q13360 481 aaPredicted RBP12.9□□□□□ -0.34
USP3-213ENST00000559711 NAB1Q13506 487 aa12.9□□□□□ -0.34
USP3-213ENST00000559711 CAMK1Q14012 370 aa12.9□□□□□ -0.34
USP3-213ENST00000559711 CERCAMQ5T4B2 595 aa12.9□□□□□ -0.34
USP3-213ENST00000559711 TMCO4Q5TGY1 634 aa12.9□□□□□ -0.34
USP3-213ENST00000559711 KDELC1Q6UW63 502 aa12.9□□□□□ -0.34
USP3-213ENST00000559711 LEKR1Q6ZMV7 388 aa12.9□□□□□ -0.34
USP3-213ENST00000559711 CTAGE3PQ8IX95 158 aa12.9□□□□□ -0.34
USP3-213ENST00000559711 FAM217AQ8IXS0 508 aa12.9□□□□□ -0.34
USP3-213ENST00000559711 OR52K2Q8NGK3 314 aa12.9□□□□□ -0.34
USP3-213ENST00000559711 PABPC5Q96DU9 382 aaKnown RBP12.9□□□□□ -0.34
USP3-213ENST00000559711 MRGPRX2Q96LB1 330 aa12.9□□□□□ -0.34
USP3-213ENST00000559711 SMC6Q96SB8 1091 aa12.9□□□□□ -0.34
USP3-213ENST00000559711 NT5MQ9NPB1 228 aa12.9□□□□□ -0.34
USP3-213ENST00000559711 KCNK9Q9NPC2 374 aa12.9□□□□□ -0.34
USP3-213ENST00000559711 VPS45Q9NRW7 570 aa12.9□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms