RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 LIN7CQ9NUP9 197 aaKnown RBP4.87□□□□□ -1.63
VPS13C-208ENST00000559119 IGSF9Q9P2J2 1179 aa4.87□□□□□ -1.63
VPS13C-208ENST00000559119 PCDHA10Q9Y5I2 948 aa4.87□□□□□ -1.63
VPS13C-208ENST00000559119 RAI2Q9Y5P3 530 aa4.87□□□□□ -1.63
VPS13C-208ENST00000559119 TMEM247A6NEH6 219 aa4.86□□□□□ -1.63
VPS13C-208ENST00000559119 PLA2G6O60733 806 aa4.86□□□□□ -1.63
VPS13C-208ENST00000559119 SOX30O94993 753 aa4.86□□□□□ -1.63
VPS13C-208ENST00000559119 IGLV2-11P01706 119 aa4.86□□□□□ -1.63
VPS13C-208ENST00000559119 UMODP07911 640 aa4.86□□□□□ -1.63
VPS13C-208ENST00000559119 F7P08709 466 aaPredicted RBP4.86□□□□□ -1.63
VPS13C-208ENST00000559119 PRPH2P23942 346 aa4.86□□□□□ -1.63
VPS13C-208ENST00000559119 PRKCHP24723 683 aa4.86□□□□□ -1.63
VPS13C-208ENST00000559119 GSTM2P28161 218 aa4.86□□□□□ -1.63
VPS13C-208ENST00000559119 C21orf33P30042 268 aaPredicted RBP4.86□□□□□ -1.63
VPS13C-208ENST00000559119 GRSF1Q12849 480 aaKnown RBP eCLIP4.86□□□□□ -1.63
VPS13C-208ENST00000559119 LONRF1Q17RB8 773 aa4.86□□□□□ -1.63
VPS13C-208ENST00000559119 EFHC1Q5JVL4 640 aa4.86□□□□□ -1.63
VPS13C-208ENST00000559119 DSTYKQ6XUX3 929 aa4.86□□□□□ -1.63
VPS13C-208ENST00000559119 C11orf96Q7Z7L8 435 aa4.86□□□□□ -1.63
VPS13C-208ENST00000559119 ANKRD13AQ8IZ07 590 aa4.86□□□□□ -1.63
VPS13C-208ENST00000559119 TMEM163Q8TC26 289 aa4.86□□□□□ -1.63
VPS13C-208ENST00000559119 IFT27Q9BW83 186 aa4.86□□□□□ -1.63
VPS13C-208ENST00000559119 HDHD5Q9BXW7 423 aa4.86□□□□□ -1.63
VPS13C-208ENST00000559119 PDE11AQ9HCR9 933 aa4.86□□□□□ -1.63
VPS13C-208ENST00000559119 TMEM248Q9NWD8 314 aa4.86□□□□□ -1.63
VPS13C-208ENST00000559119 CNTN6Q9UQ52 1028 aa4.86□□□□□ -1.63
VPS13C-208ENST00000559119 C11orf97A0A1B0GVM6 126 aaPredicted RBP4.85□□□□□ -1.63
VPS13C-208ENST00000559119 C17orf102A2RUQ5 167 aa4.85□□□□□ -1.63
VPS13C-208ENST00000559119 EYA2O00167 538 aa4.85□□□□□ -1.63
VPS13C-208ENST00000559119 HSPB6O14558 160 aa4.85□□□□□ -1.63
VPS13C-208ENST00000559119 CGAP01215 116 aa4.85□□□□□ -1.63
VPS13C-208ENST00000559119 TRIM27P14373 513 aa4.85□□□□□ -1.63
VPS13C-208ENST00000559119 KRTAP10-5P60370 271 aa4.85□□□□□ -1.63
VPS13C-208ENST00000559119 BTBD16Q32M84 506 aa4.85□□□□□ -1.63
VPS13C-208ENST00000559119 ATG9BQ674R7 924 aa4.85□□□□□ -1.63
VPS13C-208ENST00000559119 ZDHHC23Q8IYP9 409 aa4.85□□□□□ -1.63
VPS13C-208ENST00000559119 VPS52Q8N1B4 723 aa4.85□□□□□ -1.63
VPS13C-208ENST00000559119 NODALQ96S42 347 aa4.85□□□□□ -1.63
VPS13C-208ENST00000559119 NPAS1Q99742 590 aa4.85□□□□□ -1.63
VPS13C-208ENST00000559119 SLC25A33Q9BSK2 321 aa4.85□□□□□ -1.63
VPS13C-208ENST00000559119 TRIM31Q9BZY9 425 aa4.85□□□□□ -1.63
VPS13C-208ENST00000559119 XRN2Q9H0D6 950 aaKnown RBP eCLIP4.85□□□□□ -1.63
VPS13C-208ENST00000559119 IL25Q9H293 177 aa4.85□□□□□ -1.63
VPS13C-208ENST00000559119 IGLV5-52A0A0A0MRZ9 124 aa4.84□□□□□ -1.63
VPS13C-208ENST00000559119 IGHV4-28A0A0C4DH34 117 aa4.84□□□□□ -1.63
VPS13C-208ENST00000559119 RNMTO43148 476 aaKnown RBP4.84□□□□□ -1.63
VPS13C-208ENST00000559119 ASNA1O43681 348 aa4.84□□□□□ -1.63
VPS13C-208ENST00000559119 MMP3P08254 477 aa4.84□□□□□ -1.63
VPS13C-208ENST00000559119 TYK2P29597 1187 aa4.84□□□□□ -1.63
VPS13C-208ENST00000559119 RFC1P35251 1148 aaPredicted RBP4.84□□□□□ -1.63
VPS13C-208ENST00000559119 TM4SF4P48230 202 aa4.84□□□□□ -1.63
VPS13C-208ENST00000559119 CLCNKBP51801 687 aa4.84□□□□□ -1.63
VPS13C-208ENST00000559119 ALKBH1Q13686 389 aaKnown RBP4.84□□□□□ -1.63
VPS13C-208ENST00000559119 PKP1Q13835 747 aa4.84□□□□□ -1.63
VPS13C-208ENST00000559119 TBRG1Q3YBR2 411 aa4.84□□□□□ -1.63
VPS13C-208ENST00000559119 KIAA1324Q6UXG2 1013 aaKnown RBP4.84□□□□□ -1.63
VPS13C-208ENST00000559119 PJA1Q8NG27 643 aa4.84□□□□□ -1.63
VPS13C-208ENST00000559119 LILRB1Q8NHL6 650 aaPredicted RBP4.84□□□□□ -1.63
VPS13C-208ENST00000559119 FAR1Q8WVX9 515 aa4.84□□□□□ -1.63
VPS13C-208ENST00000559119 ADGRG7Q96K78 797 aa4.84□□□□□ -1.63
VPS13C-208ENST00000559119 CCDC138Q96M89 665 aa4.84□□□□□ -1.63
VPS13C-208ENST00000559119 FRG2BQ96QU4 278 aa4.84□□□□□ -1.63
VPS13C-208ENST00000559119 EPYCQ99645 322 aa4.84□□□□□ -1.63
VPS13C-208ENST00000559119 SEL1LQ9UBV2 794 aa4.84□□□□□ -1.63
VPS13C-208ENST00000559119 AGO1Q9UL18 857 aaKnown RBP4.84□□□□□ -1.63
VPS13C-208ENST00000559119 EFCAB8A8MWE9 144 aa4.83□□□□□ -1.64
VPS13C-208ENST00000559119 FCGR2AP12318 317 aa4.83□□□□□ -1.64
VPS13C-208ENST00000559119 BNC1Q01954 994 aa4.83□□□□□ -1.64
VPS13C-208ENST00000559119 CDK18Q07002 472 aa4.83□□□□□ -1.64
VPS13C-208ENST00000559119 ACSM2AQ08AH3 577 aa4.83□□□□□ -1.64
VPS13C-208ENST00000559119 SF3B4Q15427 424 aaKnown RBP eCLIP4.83□□□□□ -1.64
VPS13C-208ENST00000559119 RETSATQ6NUM9 610 aa4.83□□□□□ -1.64
VPS13C-208ENST00000559119 MTFR2Q6P444 385 aa4.83□□□□□ -1.64
VPS13C-208ENST00000559119 RNF144BQ7Z419 303 aa4.83□□□□□ -1.64
VPS13C-208ENST00000559119 SERPINA11Q86U17 422 aa4.83□□□□□ -1.64
VPS13C-208ENST00000559119 RSC1A1Q92681 617 aa4.83□□□□□ -1.64
VPS13C-208ENST00000559119 KCNJ9Q92806 393 aa4.83□□□□□ -1.64
VPS13C-208ENST00000559119 KIAA1191Q96A73 305 aa4.83□□□□□ -1.64
VPS13C-208ENST00000559119 TXNDC15Q96J42 360 aa4.83□□□□□ -1.64
VPS13C-208ENST00000559119 DONSONQ9NYP3 566 aa4.83□□□□□ -1.64
VPS13C-208ENST00000559119 KLHL42Q9P2K6 505 aa4.83□□□□□ -1.64
VPS13C-208ENST00000559119 MST1RQ04912 1400 aa4.82□□□□□ -1.64
VPS13C-208ENST00000559119 FAM90A18PA6NE21 464 aa4.82□□□□□ -1.64
VPS13C-208ENST00000559119 FAM90A16PA6NEW6 464 aa4.82□□□□□ -1.64
VPS13C-208ENST00000559119 FAM90A9PA6NNJ1 464 aa4.82□□□□□ -1.64
VPS13C-208ENST00000559119 FAM90A5PA8MXJ8 464 aa4.82□□□□□ -1.64
VPS13C-208ENST00000559119 GRM8O00222 908 aa4.82□□□□□ -1.64
VPS13C-208ENST00000559119 SP1P08047 785 aa4.82□□□□□ -1.64
VPS13C-208ENST00000559119 FAM90A15PP0C7V4 464 aa4.82□□□□□ -1.64
VPS13C-208ENST00000559119 FAM90A14PP0C7W9 464 aa4.82□□□□□ -1.64
VPS13C-208ENST00000559119 MRGPRG-AS1Q2M3A8 158 aa4.82□□□□□ -1.64
VPS13C-208ENST00000559119 TRIM60Q495X7 471 aa4.82□□□□□ -1.64
VPS13C-208ENST00000559119 SYTL3Q4VX76 610 aa4.82□□□□□ -1.64
VPS13C-208ENST00000559119 ATPAF1Q5TC12 328 aaPredicted RBP4.82□□□□□ -1.64
VPS13C-208ENST00000559119 TMEM268Q5VZI3 342 aa4.82□□□□□ -1.64
VPS13C-208ENST00000559119 PARD3BQ8TEW8 1205 aa4.82□□□□□ -1.64
VPS13C-208ENST00000559119 HDAC7Q8WUI4 952 aa4.82□□□□□ -1.64
VPS13C-208ENST00000559119 PKP4Q99569 1192 aa4.82□□□□□ -1.64
VPS13C-208ENST00000559119 SPRY4Q9C004 299 aa4.82□□□□□ -1.64
VPS13C-208ENST00000559119 BRD8Q9H0E9 1235 aa4.82□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms