RNA–Protein interactions for RNA: ENST00000557427.5

SHMT2-230, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-230ENST00000557427 BSNQ9UPA5 3926 aa12.91□□□□□ -0.34
SHMT2-230ENST00000557427 TP53BP1Q12888 1972 aaPredicted RBP12.91□□□□□ -0.34
SHMT2-230ENST00000557427 ARID1BQ8NFD5 2236 aaPredicted RBP12.91□□□□□ -0.34
SHMT2-230ENST00000557427 TEP1Q99973 2627 aaKnown RBP12.91□□□□□ -0.34
SHMT2-230ENST00000557427 O00370 1275 aa12.91□□□□□ -0.34
SHMT2-230ENST00000557427 XPO1O14980 1071 aaKnown RBP12.91□□□□□ -0.34
SHMT2-230ENST00000557427 ATP8B1O43520 1251 aa12.91□□□□□ -0.34
SHMT2-230ENST00000557427 SRGAP2O75044 1071 aa12.91□□□□□ -0.34
SHMT2-230ENST00000557427 PALMO75781 387 aa12.91□□□□□ -0.34
SHMT2-230ENST00000557427 ZBED1O96006 694 aa12.91□□□□□ -0.34
SHMT2-230ENST00000557427 WNT1P04628 370 aa12.91□□□□□ -0.34
SHMT2-230ENST00000557427 USP8P40818 1118 aa12.91□□□□□ -0.34
SHMT2-230ENST00000557427 PSEN1P49768 467 aa12.91□□□□□ -0.34
SHMT2-230ENST00000557427 ZNF132P52740 706 aa12.91□□□□□ -0.34
SHMT2-230ENST00000557427 BCAT1P54687 386 aa12.91□□□□□ -0.34
SHMT2-230ENST00000557427 UCNP55089 124 aa12.91□□□□□ -0.34
SHMT2-230ENST00000557427 NAP1L1P55209 391 aaKnown RBP12.91□□□□□ -0.34
SHMT2-230ENST00000557427 PCBP4P57723 403 aaKnown RBP12.91□□□□□ -0.34
SHMT2-230ENST00000557427 YWHAGP61981 247 aaKnown RBP eCLIP12.91□□□□□ -0.34
SHMT2-230ENST00000557427 VAC14Q08AM6 782 aa12.91□□□□□ -0.34
SHMT2-230ENST00000557427 BST2Q10589 180 aaKnown RBP12.91□□□□□ -0.34
SHMT2-230ENST00000557427 CNGA2Q16280 664 aa12.91□□□□□ -0.34
SHMT2-230ENST00000557427 RAB41Q5JT25 222 aa12.91□□□□□ -0.34
SHMT2-230ENST00000557427 MEI1Q5TIA1 1274 aa12.91□□□□□ -0.34
SHMT2-230ENST00000557427 BROXQ5VW32 411 aa12.91□□□□□ -0.34
SHMT2-230ENST00000557427 LCLAT1Q6UWP7 414 aa12.91□□□□□ -0.34
SHMT2-230ENST00000557427 TADA2BQ86TJ2 420 aa12.91□□□□□ -0.34
SHMT2-230ENST00000557427 CREG2Q8IUH2 290 aa12.91□□□□□ -0.34
SHMT2-230ENST00000557427 FAM71AQ8IYT1 594 aa12.91□□□□□ -0.34
SHMT2-230ENST00000557427 SHC3Q92529 594 aa12.91□□□□□ -0.34
SHMT2-230ENST00000557427 CALR3Q96L12 384 aaKnown RBP12.91□□□□□ -0.34
SHMT2-230ENST00000557427 ELF4Q99607 663 aaPredicted RBP12.91□□□□□ -0.34
SHMT2-230ENST00000557427 ZSWIM1Q9BR11 485 aa12.91□□□□□ -0.34
SHMT2-230ENST00000557427 TLR10Q9BXR5 811 aa12.91□□□□□ -0.34
SHMT2-230ENST00000557427 PARD6BQ9BYG5 372 aa12.91□□□□□ -0.34
SHMT2-230ENST00000557427 ANKZF1Q9H8Y5 726 aa12.91□□□□□ -0.34
SHMT2-230ENST00000557427 CLIC5Q9NZA1 410 aa12.91□□□□□ -0.34
SHMT2-230ENST00000557427 ANKMY1Q9P2S6 941 aa12.91□□□□□ -0.34
SHMT2-230ENST00000557427 RASAL2Q9UJF2 1139 aa12.91□□□□□ -0.34
SHMT2-230ENST00000557427 LSM7Q9UK45 103 aaKnown RBP12.91□□□□□ -0.34
SHMT2-230ENST00000557427 CLCA2Q9UQC9 943 aa12.91□□□□□ -0.34
SHMT2-230ENST00000557427 PCDHB1Q9Y5F3 818 aa12.91□□□□□ -0.34
SHMT2-230ENST00000557427 GRID2IPA4D2P6 1211 aa12.9□□□□□ -0.34
SHMT2-230ENST00000557427 CCDC151A5D8V7 595 aa12.9□□□□□ -0.34
SHMT2-230ENST00000557427 CES2O00748 559 aa12.9□□□□□ -0.34
SHMT2-230ENST00000557427 VILLO15195 856 aa12.9□□□□□ -0.34
SHMT2-230ENST00000557427 KLK10O43240 276 aa12.9□□□□□ -0.34
SHMT2-230ENST00000557427 DFNA5O60443 496 aa12.9□□□□□ -0.34
SHMT2-230ENST00000557427 SYNCRIPO60506 623 aaKnown RBP12.9□□□□□ -0.34
SHMT2-230ENST00000557427 ACADMP11310 421 aa12.9□□□□□ -0.34
SHMT2-230ENST00000557427 CD27P26842 260 aa12.9□□□□□ -0.34
SHMT2-230ENST00000557427 GALCP54803 685 aa12.9□□□□□ -0.34
SHMT2-230ENST00000557427 GCNT1Q02742 428 aa12.9□□□□□ -0.34
SHMT2-230ENST00000557427 ADIGQ0VDE8 80 aa12.9□□□□□ -0.34
SHMT2-230ENST00000557427 NFATC3Q12968 1075 aa12.9□□□□□ -0.34
SHMT2-230ENST00000557427 ZNF234Q14588 700 aa12.9□□□□□ -0.34
SHMT2-230ENST00000557427 TCEAL1Q15170 157 aa12.9□□□□□ -0.34
SHMT2-230ENST00000557427 SMYD5Q6GMV2 418 aa12.9□□□□□ -0.34
SHMT2-230ENST00000557427 PMF1Q6P1K2 205 aa12.9□□□□□ -0.34
SHMT2-230ENST00000557427 TMCO3Q6UWJ1 677 aa12.9□□□□□ -0.34
SHMT2-230ENST00000557427 SLFN11Q7Z7L1 901 aa12.9□□□□□ -0.34
SHMT2-230ENST00000557427 SIX6OS1Q8N1H7 587 aa12.9□□□□□ -0.34
SHMT2-230ENST00000557427 ARHGAP18Q8N392 663 aa12.9□□□□□ -0.34
SHMT2-230ENST00000557427 EXD3Q8N9H8 876 aa12.9□□□□□ -0.34
SHMT2-230ENST00000557427 SORCS1Q8WY21 1168 aa12.9□□□□□ -0.34
SHMT2-230ENST00000557427 EDEM1Q92611 657 aa12.9□□□□□ -0.34
SHMT2-230ENST00000557427 SLC27A6Q9Y2P4 619 aa12.9□□□□□ -0.34
SHMT2-230ENST00000557427 RELNP78509 3460 aa12.9□□□□□ -0.34
SHMT2-230ENST00000557427 MYO9AB2RTY4 2548 aa12.9□□□□□ -0.34
SHMT2-230ENST00000557427 PLXNA2O75051 1894 aa12.89□□□□□ -0.35
SHMT2-230ENST00000557427 AHCTF1Q8WYP5 2266 aa12.89□□□□□ -0.35
SHMT2-230ENST00000557427 SLC12A8A0AV02 714 aa12.89□□□□□ -0.35
SHMT2-230ENST00000557427 TARSL2A2RTX5 802 aaKnown RBP12.89□□□□□ -0.35
SHMT2-230ENST00000557427 ANKRD62A6NC57 917 aa12.89□□□□□ -0.35
SHMT2-230ENST00000557427 YJEFN3A6XGL0 299 aa12.89□□□□□ -0.35
SHMT2-230ENST00000557427 E7ENQ6 273 aa12.89□□□□□ -0.35
SHMT2-230ENST00000557427 M0QYV0 167 aa12.89□□□□□ -0.35
SHMT2-230ENST00000557427 ZNF185O15231 689 aa12.89□□□□□ -0.35
SHMT2-230ENST00000557427 FSBPO95073 299 aa12.89□□□□□ -0.35
SHMT2-230ENST00000557427 ZRANB2O95218 330 aaKnown RBP eCLIP12.89□□□□□ -0.35
SHMT2-230ENST00000557427 MPOP05164 745 aa12.89□□□□□ -0.35
SHMT2-230ENST00000557427 IGHV4-34P06331 123 aa12.89□□□□□ -0.35
SHMT2-230ENST00000557427 ITGAVP06756 1048 aa12.89□□□□□ -0.35
SHMT2-230ENST00000557427 C7P10643 843 aa12.89□□□□□ -0.35
SHMT2-230ENST00000557427 COG7P83436 770 aa12.89□□□□□ -0.35
SHMT2-230ENST00000557427 NFKB2Q00653 900 aa12.89□□□□□ -0.35
SHMT2-230ENST00000557427 BNIP3Q12983 259 aa12.89□□□□□ -0.35
SHMT2-230ENST00000557427 BSPRYQ5W0U4 402 aa12.89□□□□□ -0.35
SHMT2-230ENST00000557427 TMEM215Q68D42 235 aa12.89□□□□□ -0.35
SHMT2-230ENST00000557427 PM20D1Q6GTS8 502 aa12.89□□□□□ -0.35
SHMT2-230ENST00000557427 WDR93Q6P2C0 686 aa12.89□□□□□ -0.35
SHMT2-230ENST00000557427 KLHDC10Q6PID8 442 aa12.89□□□□□ -0.35
SHMT2-230ENST00000557427 KDM7AQ6ZMT4 941 aa12.89□□□□□ -0.35
SHMT2-230ENST00000557427 SYCE1Q8N0S2 351 aa12.89□□□□□ -0.35
SHMT2-230ENST00000557427 MMGT1Q8N4V1 131 aa12.89□□□□□ -0.35
SHMT2-230ENST00000557427 LRRC57Q8N9N7 239 aa12.89□□□□□ -0.35
SHMT2-230ENST00000557427 NOA1Q8NC60 698 aaKnown RBP12.89□□□□□ -0.35
SHMT2-230ENST00000557427 TPCN2Q8NHX9 752 aa12.89□□□□□ -0.35
SHMT2-230ENST00000557427 RNF139Q8WU17 664 aa12.89□□□□□ -0.35
SHMT2-230ENST00000557427 SLC35F5Q8WV83 523 aa12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms