RNA–Protein interactions for RNA: ENST00000556486.5

SCFD1-220, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 974 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-220ENST00000556486 RNF139Q8WU17 664 aa10.37□□□□□ -0.75
SCFD1-220ENST00000556486 SLC35F5Q8WV83 523 aa10.37□□□□□ -0.75
SCFD1-220ENST00000556486 IRGQQ8WZA9 623 aa10.37□□□□□ -0.75
SCFD1-220ENST00000556486 EEF2KMTQ96G04 330 aa10.37□□□□□ -0.75
SCFD1-220ENST00000556486 IPO9Q96P70 1041 aaKnown RBP10.37□□□□□ -0.75
SCFD1-220ENST00000556486 LRRC4Q9HBW1 653 aa10.37□□□□□ -0.75
SCFD1-220ENST00000556486 ABCB8Q9NUT2 735 aa10.37□□□□□ -0.75
SCFD1-220ENST00000556486 HESX1Q9UBX0 185 aa10.37□□□□□ -0.75
SCFD1-220ENST00000556486 CLCA2Q9UQC9 943 aa10.37□□□□□ -0.75
SCFD1-220ENST00000556486 NYNRINQ9P2P1 1898 aaKnown RBP10.36□□□□□ -0.75
SCFD1-220ENST00000556486 A0A1W2PP55 124 aa10.36□□□□□ -0.75
SCFD1-220ENST00000556486 A0A1W2PPC4 97 aa10.36□□□□□ -0.75
SCFD1-220ENST00000556486 VILLO15195 856 aa10.36□□□□□ -0.75
SCFD1-220ENST00000556486 KLK10O43240 276 aa10.36□□□□□ -0.75
SCFD1-220ENST00000556486 WISP1O95388 367 aa10.36□□□□□ -0.75
SCFD1-220ENST00000556486 DLDP09622 509 aaKnown RBP10.36□□□□□ -0.75
SCFD1-220ENST00000556486 MYF5P13349 255 aa10.36□□□□□ -0.75
SCFD1-220ENST00000556486 C6P13671 934 aa10.36□□□□□ -0.75
SCFD1-220ENST00000556486 CES1P23141 567 aa10.36□□□□□ -0.75
SCFD1-220ENST00000556486 SGSHP51688 502 aa10.36□□□□□ -0.75
SCFD1-220ENST00000556486 TMPRSS3P57727 454 aa10.36□□□□□ -0.75
SCFD1-220ENST00000556486 DAOAP59103 153 aa10.36□□□□□ -0.75
SCFD1-220ENST00000556486 NFKB2Q00653 900 aa10.36□□□□□ -0.75
SCFD1-220ENST00000556486 TYRO3Q06418 890 aa10.36□□□□□ -0.75
SCFD1-220ENST00000556486 KCNJ12Q14500 433 aa10.36□□□□□ -0.75
SCFD1-220ENST00000556486 STILQ15468 1287 aa10.36□□□□□ -0.75
SCFD1-220ENST00000556486 TTC31Q49AM3 519 aaPredicted RBP10.36□□□□□ -0.75
SCFD1-220ENST00000556486 NUGGCQ68CJ6 796 aa10.36□□□□□ -0.75
SCFD1-220ENST00000556486 AHI1Q8N157 1196 aa10.36□□□□□ -0.75
SCFD1-220ENST00000556486 KDM1BQ8NB78 822 aa10.36□□□□□ -0.75
SCFD1-220ENST00000556486 WFDC5Q8TCV5 224 aa10.36□□□□□ -0.75
SCFD1-220ENST00000556486 TMA16Q96EY4 203 aaKnown RBP10.36□□□□□ -0.75
SCFD1-220ENST00000556486 LMLNQ96KR4 655 aa10.36□□□□□ -0.75
SCFD1-220ENST00000556486 ARMCX3Q9UH62 379 aaPredicted RBP10.36□□□□□ -0.75
SCFD1-220ENST00000556486 GGA2Q9UJY4 613 aa10.36□□□□□ -0.75
SCFD1-220ENST00000556486 PLA2G4CQ9UP65 541 aa10.36□□□□□ -0.75
SCFD1-220ENST00000556486 PTPN13Q12923 2485 aa10.35□□□□□ -0.75
SCFD1-220ENST00000556486 DOCK9Q9BZ29 2069 aa10.35□□□□□ -0.75
SCFD1-220ENST00000556486 MID1O15344 667 aa10.35□□□□□ -0.75
SCFD1-220ENST00000556486 PAPSS1O43252 624 aaPredicted RBP10.35□□□□□ -0.75
SCFD1-220ENST00000556486 RNASEH2AO75792 299 aaKnown RBP10.35□□□□□ -0.75
SCFD1-220ENST00000556486 ATP5BP06576 529 aaKnown RBP10.35□□□□□ -0.75
SCFD1-220ENST00000556486 C1SP09871 688 aa10.35□□□□□ -0.75
SCFD1-220ENST00000556486 PABPC1P11940 636 aaKnown RBP10.35□□□□□ -0.75
SCFD1-220ENST00000556486 CD38P28907 300 aa10.35□□□□□ -0.75
SCFD1-220ENST00000556486 RPL34P49207 117 aaKnown RBP10.35□□□□□ -0.75
SCFD1-220ENST00000556486 PMS1P54277 932 aaKnown RBP10.35□□□□□ -0.75
SCFD1-220ENST00000556486 GALCP54803 685 aa10.35□□□□□ -0.75
SCFD1-220ENST00000556486 PCBP4P57723 403 aaKnown RBP10.35□□□□□ -0.75
SCFD1-220ENST00000556486 GABREP78334 506 aa10.35□□□□□ -0.75
SCFD1-220ENST00000556486 RHDQ02161 417 aa10.35□□□□□ -0.75
SCFD1-220ENST00000556486 PNOCQ13519 176 aa10.35□□□□□ -0.75
SCFD1-220ENST00000556486 SERINC3Q13530 473 aa10.35□□□□□ -0.75
SCFD1-220ENST00000556486 CNGA2Q16280 664 aa10.35□□□□□ -0.75
SCFD1-220ENST00000556486 FAM133BQ5BKY9 247 aaKnown RBP10.35□□□□□ -0.75
SCFD1-220ENST00000556486 DCAF17Q5H9S7 520 aaPredicted RBP10.35□□□□□ -0.75
SCFD1-220ENST00000556486 PIK3R6Q5UE93 754 aa10.35□□□□□ -0.75
SCFD1-220ENST00000556486 BROXQ5VW32 411 aa10.35□□□□□ -0.75
SCFD1-220ENST00000556486 TCERG1LQ5VWI1 586 aa10.35□□□□□ -0.75
SCFD1-220ENST00000556486 ZNF776Q68DI1 518 aaPredicted RBP10.35□□□□□ -0.75
SCFD1-220ENST00000556486 ANKRD40Q6AI12 368 aa10.35□□□□□ -0.75
SCFD1-220ENST00000556486 BEND5Q7L4P6 421 aa10.35□□□□□ -0.75
SCFD1-220ENST00000556486 UNC45BQ8IWX7 931 aa10.35□□□□□ -0.75
SCFD1-220ENST00000556486 DHX40Q8IX18 779 aaKnown RBP10.35□□□□□ -0.75
SCFD1-220ENST00000556486 ELOA2Q8IYF1 753 aaPredicted RBP10.35□□□□□ -0.75
SCFD1-220ENST00000556486 SIX6OS1Q8N1H7 587 aa10.35□□□□□ -0.75
SCFD1-220ENST00000556486 ZNF248Q8NDW4 579 aa10.35□□□□□ -0.75
SCFD1-220ENST00000556486 KCNE4Q8WWG9 221 aa10.35□□□□□ -0.75
SCFD1-220ENST00000556486 NDRG1Q92597 394 aaKnown RBP10.35□□□□□ -0.75
SCFD1-220ENST00000556486 TTC9Q92623 222 aa10.35□□□□□ -0.75
SCFD1-220ENST00000556486 GOLGA1Q92805 767 aa10.35□□□□□ -0.75
SCFD1-220ENST00000556486 SERAC1Q96JX3 654 aa10.35□□□□□ -0.75
SCFD1-220ENST00000556486 HSFY1Q96LI6 401 aa10.35□□□□□ -0.75
SCFD1-220ENST00000556486 TSG101Q99816 390 aa10.35□□□□□ -0.75
SCFD1-220ENST00000556486 SGK2Q9HBY8 427 aa10.35□□□□□ -0.75
SCFD1-220ENST00000556486 METTL14Q9HCE5 456 aaKnown RBP10.35□□□□□ -0.75
SCFD1-220ENST00000556486 GDF3Q9NR23 364 aa10.35□□□□□ -0.75
SCFD1-220ENST00000556486 FBXL12Q9NXK8 326 aa10.35□□□□□ -0.75
SCFD1-220ENST00000556486 SFMBT1Q9UHJ3 866 aa10.35□□□□□ -0.75
SCFD1-220ENST00000556486 SCML1Q9UN30 329 aa10.35□□□□□ -0.75
SCFD1-220ENST00000556486 UBR5O95071 2799 aaPredicted RBP10.34□□□□□ -0.75
SCFD1-220ENST00000556486 A0A1W2PR77 199 aa10.34□□□□□ -0.75
SCFD1-220ENST00000556486 CAPN8A6NHC0 703 aa10.34□□□□□ -0.75
SCFD1-220ENST00000556486 P4HA2O15460 535 aa10.34□□□□□ -0.75
SCFD1-220ENST00000556486 DFNA5O60443 496 aa10.34□□□□□ -0.75
SCFD1-220ENST00000556486 FBXO21O94952 628 aa10.34□□□□□ -0.75
SCFD1-220ENST00000556486 MT-CO3P00414 261 aa10.34□□□□□ -0.75
SCFD1-220ENST00000556486 CD19P15391 556 aa10.34□□□□□ -0.75
SCFD1-220ENST00000556486 CKMT2P17540 419 aa10.34□□□□□ -0.75
SCFD1-220ENST00000556486 CD70P32970 193 aa10.34□□□□□ -0.75
SCFD1-220ENST00000556486 EIF4A3P38919 411 aaKnown RBP10.34□□□□□ -0.75
SCFD1-220ENST00000556486 PPP1R2P41236 205 aa10.34□□□□□ -0.75
SCFD1-220ENST00000556486 CTSOP43234 321 aaPredicted RBP10.34□□□□□ -0.75
SCFD1-220ENST00000556486 SLC11A2P49281 568 aa10.34□□□□□ -0.75
SCFD1-220ENST00000556486 FMO5P49326 533 aa10.34□□□□□ -0.75
SCFD1-220ENST00000556486 ARRB1P49407 418 aaPredicted RBP10.34□□□□□ -0.75
SCFD1-220ENST00000556486 PPP2CBP62714 309 aa10.34□□□□□ -0.75
SCFD1-220ENST00000556486 PPP2CAP67775 309 aa10.34□□□□□ -0.75
SCFD1-220ENST00000556486 GCNT1Q02742 428 aa10.34□□□□□ -0.75
SCFD1-220ENST00000556486 SRSF1Q07955 248 aaKnown RBP eCLIP10.34□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms