RNA–Protein interactions for RNA: ENST00000556096.6

VPS33B-205, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 2

Gene VPS33B, Length 1,731 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-205ENST00000556096 DENND1AQ8TEH3 1009 aa15□□□□□ -0.01
VPS33B-205ENST00000556096 HMCESQ96FZ2 354 aa15□□□□□ -0.01
VPS33B-205ENST00000556096 CHMP6Q96FZ7 201 aa15□□□□□ -0.01
VPS33B-205ENST00000556096 OXNAD1Q96HP4 312 aaPredicted RBP15□□□□□ -0.01
VPS33B-205ENST00000556096 ZNF317Q96PQ6 595 aaPredicted RBP15□□□□□ -0.01
VPS33B-205ENST00000556096 SMYD2Q9NRG4 433 aa15□□□□□ -0.01
VPS33B-205ENST00000556096 ASB3Q9Y575 518 aa15□□□□□ -0.01
VPS33B-205ENST00000556096 NYNRINQ9P2P1 1898 aaKnown RBP14.99□□□□□ -0.01
VPS33B-205ENST00000556096 RFXAPO00287 272 aa14.99□□□□□ -0.01
VPS33B-205ENST00000556096 TYROBPO43914 113 aa14.99□□□□□ -0.01
VPS33B-205ENST00000556096 POLBP06746 335 aa14.99□□□□□ -0.01
VPS33B-205ENST00000556096 GBP2P32456 591 aaPredicted RBP14.99□□□□□ -0.01
VPS33B-205ENST00000556096 CTNNB1P35222 781 aa14.99□□□□□ -0.01
VPS33B-205ENST00000556096 CDH17Q12864 832 aa14.99□□□□□ -0.01
VPS33B-205ENST00000556096 NAB1Q13506 487 aa14.99□□□□□ -0.01
VPS33B-205ENST00000556096 FAM133BQ5BKY9 247 aaKnown RBP14.99□□□□□ -0.01
VPS33B-205ENST00000556096 SPANXN3Q5MJ09 141 aa14.99□□□□□ -0.01
VPS33B-205ENST00000556096 TRMT10BQ6PF06 316 aaKnown RBP14.99□□□□□ -0.01
VPS33B-205ENST00000556096 LGI2Q8N0V4 545 aa14.99□□□□□ -0.01
VPS33B-205ENST00000556096 ANKRD42Q8N9B4 389 aa14.99□□□□□ -0.01
VPS33B-205ENST00000556096 DNAAF3Q8N9W5 541 aa14.99□□□□□ -0.01
VPS33B-205ENST00000556096 KLHL23Q8NBE8 558 aa14.99□□□□□ -0.01
VPS33B-205ENST00000556096 ZNF473Q8WTR7 871 aaKnown RBP14.99□□□□□ -0.01
VPS33B-205ENST00000556096 CKAP2Q8WWK9 683 aa14.99□□□□□ -0.01
VPS33B-205ENST00000556096 KLF16Q9BXK1 252 aaPredicted RBP14.99□□□□□ -0.01
VPS33B-205ENST00000556096 KIF9Q9HAQ2 790 aa14.99□□□□□ -0.01
VPS33B-205ENST00000556096 SLC28A3Q9HAS3 691 aa14.99□□□□□ -0.01
VPS33B-205ENST00000556096 SAMD15Q9P1V8 674 aa14.99□□□□□ -0.01
VPS33B-205ENST00000556096 RAMP2O60895 175 aa14.98□□□□□ -0.01
VPS33B-205ENST00000556096 KRT37O76014 449 aa14.98□□□□□ -0.01
VPS33B-205ENST00000556096 STC2O76061 302 aa14.98□□□□□ -0.01
VPS33B-205ENST00000556096 MT-ND3P03897 115 aa14.98□□□□□ -0.01
VPS33B-205ENST00000556096 HLA-DQB2P05538 268 aa14.98□□□□□ -0.01
VPS33B-205ENST00000556096 SNRPAP09012 282 aaKnown RBP14.98□□□□□ -0.01
VPS33B-205ENST00000556096 KRT4P19013 534 aa14.98□□□□□ -0.01
VPS33B-205ENST00000556096 SERPINB9P50453 376 aa14.98□□□□□ -0.01
VPS33B-205ENST00000556096 CRADDP78560 199 aa14.98□□□□□ -0.01
VPS33B-205ENST00000556096 IL10RBQ08334 325 aa14.98□□□□□ -0.01
VPS33B-205ENST00000556096 SERINC3Q13530 473 aa14.98□□□□□ -0.01
VPS33B-205ENST00000556096 CRYMQ14894 314 aa14.98□□□□□ -0.01
VPS33B-205ENST00000556096 POLD3Q15054 466 aaPredicted RBP14.98□□□□□ -0.01
VPS33B-205ENST00000556096 PABPC1LQ4VXU2 614 aaKnown RBP14.98□□□□□ -0.01
VPS33B-205ENST00000556096 MARK2Q7KZI7 788 aaKnown RBP14.98□□□□□ -0.01
VPS33B-205ENST00000556096 TMEM135Q86UB9 458 aa14.98□□□□□ -0.01
VPS33B-205ENST00000556096 TEX26Q8N6G2 289 aa14.98□□□□□ -0.01
VPS33B-205ENST00000556096 MGARPQ8TDB4 240 aa14.98□□□□□ -0.01
VPS33B-205ENST00000556096 DYDC1Q8WWB3 177 aa14.98□□□□□ -0.01
VPS33B-205ENST00000556096 MTBPQ96DY7 904 aa14.98□□□□□ -0.01
VPS33B-205ENST00000556096 ZNF419Q96HQ0 510 aaPredicted RBP14.98□□□□□ -0.01
VPS33B-205ENST00000556096 TRIM56Q9BRZ2 755 aaKnown RBP14.98□□□□□ -0.01
VPS33B-205ENST00000556096 IL22Q9GZX6 179 aa14.98□□□□□ -0.01
VPS33B-205ENST00000556096 RNF38Q9H0F5 515 aa14.98□□□□□ -0.01
VPS33B-205ENST00000556096 RABEP2Q9H5N1 569 aa14.98□□□□□ -0.01
VPS33B-205ENST00000556096 PIH1D1Q9NWS0 290 aaKnown RBP14.98□□□□□ -0.01
VPS33B-205ENST00000556096 CHD7Q9P2D1 2997 aa14.98□□□□□ -0.01
VPS33B-205ENST00000556096 EPOPA6NHQ4 379 aa14.97□□□□□ -0.01
VPS33B-205ENST00000556096 USP12O75317 370 aa14.97□□□□□ -0.01
VPS33B-205ENST00000556096 SPAG7O75391 227 aa14.97□□□□□ -0.01
VPS33B-205ENST00000556096 NEBLO76041 1014 aa14.97□□□□□ -0.01
VPS33B-205ENST00000556096 F11P03951 625 aa14.97□□□□□ -0.01
VPS33B-205ENST00000556096 CNPP09543 421 aaKnown RBP14.97□□□□□ -0.01
VPS33B-205ENST00000556096 DRD4P21917 467 aa14.97□□□□□ -0.01
VPS33B-205ENST00000556096 CNTFP26441 200 aa14.97□□□□□ -0.01
VPS33B-205ENST00000556096 OR1E1P30953 314 aa14.97□□□□□ -0.01
VPS33B-205ENST00000556096 SLC6A4P31645 630 aa14.97□□□□□ -0.01
VPS33B-205ENST00000556096 BMPR1AP36894 532 aa14.97□□□□□ -0.01
VPS33B-205ENST00000556096 SLC18A2Q05940 514 aa14.97□□□□□ -0.01
VPS33B-205ENST00000556096 NIPAL4Q0D2K0 466 aa14.97□□□□□ -0.01
VPS33B-205ENST00000556096 OLIG2Q13516 323 aa14.97□□□□□ -0.01
VPS33B-205ENST00000556096 LRRC14Q15048 493 aa14.97□□□□□ -0.01
VPS33B-205ENST00000556096 RABGAP1LQ5R372 815 aa14.97□□□□□ -0.01
VPS33B-205ENST00000556096 MARC1Q5VT66 337 aa14.97□□□□□ -0.01
VPS33B-205ENST00000556096 SH2D5Q6ZV89 423 aa14.97□□□□□ -0.01
VPS33B-205ENST00000556096 TMEM150AQ86TG1 271 aa14.97□□□□□ -0.01
VPS33B-205ENST00000556096 CCDC117Q8IWD4 279 aaPredicted RBP14.97□□□□□ -0.01
VPS33B-205ENST00000556096 C4orf33Q8N1A6 199 aa14.97□□□□□ -0.01
VPS33B-205ENST00000556096 NSMCE1Q8WV22 266 aa14.97□□□□□ -0.01
VPS33B-205ENST00000556096 CDKL2Q92772 493 aa14.97□□□□□ -0.01
VPS33B-205ENST00000556096 MYEOVQ96EZ4 313 aa14.97□□□□□ -0.01
VPS33B-205ENST00000556096 SLC25A51Q9H1U9 297 aa14.97□□□□□ -0.01
VPS33B-205ENST00000556096 ENTPD7Q9NQZ7 604 aa14.97□□□□□ -0.01
VPS33B-205ENST00000556096 FAM169AQ9Y6X4 670 aa14.97□□□□□ -0.01
VPS33B-205ENST00000556096 FAM237BA0A1B0GVD1 139 aa14.97□□□□□ -0.01
VPS33B-205ENST00000556096 C2orf78A6NCI8 922 aa14.97□□□□□ -0.01
VPS33B-205ENST00000556096 J3KR12 359 aa14.97□□□□□ -0.01
VPS33B-205ENST00000556096 KRT38O76015 456 aa14.97□□□□□ -0.01
VPS33B-205ENST00000556096 USP1O94782 785 aa14.97□□□□□ -0.01
VPS33B-205ENST00000556096 ZWINTO95229 277 aa14.97□□□□□ -0.01
VPS33B-205ENST00000556096 ASMTLO95671 621 aa14.97□□□□□ -0.01
VPS33B-205ENST00000556096 LATS1O95835 1130 aa14.97□□□□□ -0.01
VPS33B-205ENST00000556096 KLKB1P03952 638 aa14.97□□□□□ -0.01
VPS33B-205ENST00000556096 ADRA1AP35348 466 aa14.97□□□□□ -0.01
VPS33B-205ENST00000556096 CCT5P48643 541 aa14.97□□□□□ -0.01
VPS33B-205ENST00000556096 CDH4P55283 916 aa14.97□□□□□ -0.01
VPS33B-205ENST00000556096 WDR4P57081 412 aaKnown RBP14.97□□□□□ -0.01
VPS33B-205ENST00000556096 IL9RQ01113 521 aa14.97□□□□□ -0.01
VPS33B-205ENST00000556096 MGAT5Q09328 741 aa14.97□□□□□ -0.01
VPS33B-205ENST00000556096 MPP3Q13368 585 aa14.97□□□□□ -0.01
VPS33B-205ENST00000556096 ARMC3Q5W041 872 aa14.97□□□□□ -0.01
VPS33B-205ENST00000556096 LILRA6Q6PI73 481 aa14.97□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms