RNA–Protein interactions for RNA: ENST00000553868.1

SHMT2-208, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 941 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-208ENST00000553868 PYROXD2Q8N2H3 581 aa14.85□□□□□ -0.03
SHMT2-208ENST00000553868 ATL2Q8NHH9 583 aa14.85□□□□□ -0.03
SHMT2-208ENST00000553868 PCDH19Q8TAB3 1148 aa14.85□□□□□ -0.03
SHMT2-208ENST00000553868 SHKBP1Q8TBC3 707 aa14.85□□□□□ -0.03
SHMT2-208ENST00000553868 C1orf54Q8WWF1 131 aa14.85□□□□□ -0.03
SHMT2-208ENST00000553868 RHOXF2Q9BQY4 288 aa14.85□□□□□ -0.03
SHMT2-208ENST00000553868 HERPUD2Q9BSE4 406 aa14.85□□□□□ -0.03
SHMT2-208ENST00000553868 RAB17Q9H0T7 212 aa14.85□□□□□ -0.03
SHMT2-208ENST00000553868 TRPC7Q9HCX4 862 aa14.85□□□□□ -0.03
SHMT2-208ENST00000553868 GON4LQ3T8J9 2241 aa14.84□□□□□ -0.03
SHMT2-208ENST00000553868 TRAV19A0A0A6YYK7 116 aa14.84□□□□□ -0.03
SHMT2-208ENST00000553868 LIASO43766 372 aa14.84□□□□□ -0.03
SHMT2-208ENST00000553868 RNF40O75150 1001 aa14.84□□□□□ -0.03
SHMT2-208ENST00000553868 ECEL1O95672 775 aa14.84□□□□□ -0.03
SHMT2-208ENST00000553868 MBL2P11226 248 aaPredicted RBP14.84□□□□□ -0.03
SHMT2-208ENST00000553868 BCKDHBP21953 392 aa14.84□□□□□ -0.03
SHMT2-208ENST00000553868 SERPINB6P35237 376 aa14.84□□□□□ -0.03
SHMT2-208ENST00000553868 OTUD4Q01804 1114 aaKnown RBP14.84□□□□□ -0.03
SHMT2-208ENST00000553868 BYSLQ13895 437 aaKnown RBP14.84□□□□□ -0.03
SHMT2-208ENST00000553868 DPYSQ14117 519 aa14.84□□□□□ -0.03
SHMT2-208ENST00000553868 PMS2CLQ68D20 193 aa14.84□□□□□ -0.03
SHMT2-208ENST00000553868 CYP2U1Q7Z449 544 aa14.84□□□□□ -0.03
SHMT2-208ENST00000553868 PQLC3Q8N755 202 aa14.84□□□□□ -0.03
SHMT2-208ENST00000553868 PLD5Q8N7P1 536 aa14.84□□□□□ -0.03
SHMT2-208ENST00000553868 ACTL9Q8TC94 416 aa14.84□□□□□ -0.03
SHMT2-208ENST00000553868 PIGKQ92643 395 aa14.84□□□□□ -0.03
SHMT2-208ENST00000553868 SLCO2A1Q92959 643 aa14.84□□□□□ -0.03
SHMT2-208ENST00000553868 AZIN2Q96A70 460 aa14.84□□□□□ -0.03
SHMT2-208ENST00000553868 HAUS1Q96CS2 278 aa14.84□□□□□ -0.03
SHMT2-208ENST00000553868 TBC1D31Q96DN5 1066 aa14.84□□□□□ -0.03
SHMT2-208ENST00000553868 CCDC114Q96M63 670 aa14.84□□□□□ -0.03
SHMT2-208ENST00000553868 DDX50Q9BQ39 737 aaKnown RBP14.84□□□□□ -0.03
SHMT2-208ENST00000553868 LRRC1Q9BTT6 524 aa14.84□□□□□ -0.03
SHMT2-208ENST00000553868 LRRC3Q9BY71 257 aa14.84□□□□□ -0.03
SHMT2-208ENST00000553868 SIK2Q9H0K1 926 aa14.84□□□□□ -0.03
SHMT2-208ENST00000553868 ATXN3LQ9H3M9 355 aa14.84□□□□□ -0.03
SHMT2-208ENST00000553868 CATSPERBQ9H7T0 1116 aa14.84□□□□□ -0.03
SHMT2-208ENST00000553868 FSCN3Q9NQT6 498 aa14.84□□□□□ -0.03
SHMT2-208ENST00000553868 ARHGEF4Q9NR80 690 aa14.84□□□□□ -0.03
SHMT2-208ENST00000553868 AMACRQ9UHK6 382 aa14.84□□□□□ -0.03
SHMT2-208ENST00000553868 DRG1Q9Y295 367 aaKnown RBP14.84□□□□□ -0.03
SHMT2-208ENST00000553868 R3HDM2Q9Y2K5 976 aaKnown RBP14.84□□□□□ -0.03
SHMT2-208ENST00000553868 UTP11Q9Y3A2 253 aaKnown RBP14.84□□□□□ -0.03
SHMT2-208ENST00000553868 RAD54BQ9Y620 910 aa14.84□□□□□ -0.03
SHMT2-208ENST00000553868 ADAMTS9Q9P2N4 1935 aa14.84□□□□□ -0.03
SHMT2-208ENST00000553868 H0Y626 953 aa14.83□□□□□ -0.04
SHMT2-208ENST00000553868 DYNC1I1O14576 645 aa14.83□□□□□ -0.04
SHMT2-208ENST00000553868 RAD51CO43502 376 aa14.83□□□□□ -0.04
SHMT2-208ENST00000553868 LRIG2O94898 1065 aa14.83□□□□□ -0.04
SHMT2-208ENST00000553868 TRIM16O95361 564 aa14.83□□□□□ -0.04
SHMT2-208ENST00000553868 LATS1O95835 1130 aa14.83□□□□□ -0.04
SHMT2-208ENST00000553868 OLFM2O95897 454 aa14.83□□□□□ -0.04
SHMT2-208ENST00000553868 EGFP01133 1207 aa14.83□□□□□ -0.04
SHMT2-208ENST00000553868 HMBSP08397 361 aa14.83□□□□□ -0.04
SHMT2-208ENST00000553868 HDCP19113 662 aa14.83□□□□□ -0.04
SHMT2-208ENST00000553868 AMPD1P23109 780 aa14.83□□□□□ -0.04
SHMT2-208ENST00000553868 EPHB2P29323 1055 aa14.83□□□□□ -0.04
SHMT2-208ENST00000553868 EIF3EP60228 445 aaKnown RBP14.83□□□□□ -0.04
SHMT2-208ENST00000553868 ADCY2Q08462 1091 aa14.83□□□□□ -0.04
SHMT2-208ENST00000553868 XRCC4Q13426 336 aa14.83□□□□□ -0.04
SHMT2-208ENST00000553868 SNX1Q13596 522 aa14.83□□□□□ -0.04
SHMT2-208ENST00000553868 NOMO1Q15155 1222 aa14.83□□□□□ -0.04
SHMT2-208ENST00000553868 PPP1R7Q15435 360 aa14.83□□□□□ -0.04
SHMT2-208ENST00000553868 TRIM61Q5EBN2 209 aa14.83□□□□□ -0.04
SHMT2-208ENST00000553868 TMCO3Q6UWJ1 677 aa14.83□□□□□ -0.04
SHMT2-208ENST00000553868 GAREM2Q75VX8 874 aa14.83□□□□□ -0.04
SHMT2-208ENST00000553868 TMEM150AQ86TG1 271 aa14.83□□□□□ -0.04
SHMT2-208ENST00000553868 IFT20Q8IY31 132 aa14.83□□□□□ -0.04
SHMT2-208ENST00000553868 CAMKK1Q8N5S9 505 aa14.83□□□□□ -0.04
SHMT2-208ENST00000553868 PNPLA1Q8N8W4 532 aa14.83□□□□□ -0.04
SHMT2-208ENST00000553868 CCHCR1Q8TD31 782 aa14.83□□□□□ -0.04
SHMT2-208ENST00000553868 ATG4AQ8WYN0 398 aa14.83□□□□□ -0.04
SHMT2-208ENST00000553868 SLC39A7Q92504 469 aa14.83□□□□□ -0.04
SHMT2-208ENST00000553868 CHFRQ96EP1 664 aa14.83□□□□□ -0.04
SHMT2-208ENST00000553868 FERMT1Q9BQL6 677 aa14.83□□□□□ -0.04
SHMT2-208ENST00000553868 KLF16Q9BXK1 252 aaPredicted RBP14.83□□□□□ -0.04
SHMT2-208ENST00000553868 ANLNQ9NQW6 1124 aa14.83□□□□□ -0.04
SHMT2-208ENST00000553868 TMPRSS4Q9NRS4 437 aa14.83□□□□□ -0.04
SHMT2-208ENST00000553868 MBD1Q9UIS9 605 aaPredicted RBP14.83□□□□□ -0.04
SHMT2-208ENST00000553868 ZNF148Q9UQR1 794 aa14.83□□□□□ -0.04
SHMT2-208ENST00000553868 RAI2Q9Y5P3 530 aa14.83□□□□□ -0.04
SHMT2-208ENST00000553868 HS3ST4Q9Y661 456 aa14.83□□□□□ -0.04
SHMT2-208ENST00000553868 ZNF638Q14966 1978 aaKnown RBP14.82□□□□□ -0.04
SHMT2-208ENST00000553868 A0A1W2PRU2 124 aa14.82□□□□□ -0.04
SHMT2-208ENST00000553868 CFAP69A5D8W1 941 aa14.82□□□□□ -0.04
SHMT2-208ENST00000553868 C2orf78A6NCI8 922 aa14.82□□□□□ -0.04
SHMT2-208ENST00000553868 I6L893 689 aaPredicted RBP14.82□□□□□ -0.04
SHMT2-208ENST00000553868 HEXIM1O94992 359 aaKnown RBP14.82□□□□□ -0.04
SHMT2-208ENST00000553868 ITGAVP06756 1048 aa14.82□□□□□ -0.04
SHMT2-208ENST00000553868 PI4KAP42356 2102 aa14.82□□□□□ -0.04
SHMT2-208ENST00000553868 DHPSP49366 369 aaPredicted RBP14.82□□□□□ -0.04
SHMT2-208ENST00000553868 SLC7A9P82251 487 aa14.82□□□□□ -0.04
SHMT2-208ENST00000553868 PAFAH1B3Q15102 231 aaKnown RBP14.82□□□□□ -0.04
SHMT2-208ENST00000553868 NAIF1Q69YI7 327 aaPredicted RBP14.82□□□□□ -0.04
SHMT2-208ENST00000553868 RWDD4Q6NW29 188 aaKnown RBP14.82□□□□□ -0.04
SHMT2-208ENST00000553868 TTC27Q6P3X3 843 aa14.82□□□□□ -0.04
SHMT2-208ENST00000553868 GSTA5Q7RTV2 222 aa14.82□□□□□ -0.04
SHMT2-208ENST00000553868 ZNF605Q86T29 641 aa14.82□□□□□ -0.04
SHMT2-208ENST00000553868 CHSY1Q86X52 802 aa14.82□□□□□ -0.04
SHMT2-208ENST00000553868 DDX42Q86XP3 938 aaKnown RBP eCLIP14.82□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms