RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 HNRNPDQ14103 355 aaKnown RBP7.63□□□□□ -1.19
LIMA1-213ENST00000552720 GRAMD1BQ3KR37 738 aa7.63□□□□□ -1.19
LIMA1-213ENST00000552720 LSM12Q3MHD2 195 aaKnown RBP7.63□□□□□ -1.19
LIMA1-213ENST00000552720 CWF19L1Q69YN2 538 aaKnown RBP7.63□□□□□ -1.19
LIMA1-213ENST00000552720 FASTKD5Q7L8L6 764 aaKnown RBP7.63□□□□□ -1.19
LIMA1-213ENST00000552720 ADGRG6Q86SQ4 1221 aa7.63□□□□□ -1.19
LIMA1-213ENST00000552720 KBTBD6Q86V97 674 aa7.63□□□□□ -1.19
LIMA1-213ENST00000552720 GALNT15Q8N3T1 639 aa7.63□□□□□ -1.19
LIMA1-213ENST00000552720 FBXO22Q8NEZ5 403 aa7.63□□□□□ -1.19
LIMA1-213ENST00000552720 ZMIZ2Q8NF64 920 aa7.63□□□□□ -1.19
LIMA1-213ENST00000552720 KCTD4Q8WVF5 259 aa7.63□□□□□ -1.19
LIMA1-213ENST00000552720 USP13Q92995 863 aaPredicted RBP7.63□□□□□ -1.19
LIMA1-213ENST00000552720 ZNF419Q96HQ0 510 aaPredicted RBP7.63□□□□□ -1.19
LIMA1-213ENST00000552720 TNIP3Q96KP6 325 aa7.63□□□□□ -1.19
LIMA1-213ENST00000552720 ZNF560Q96MR9 790 aa7.63□□□□□ -1.19
LIMA1-213ENST00000552720 CATSPER2Q96P56 530 aa7.63□□□□□ -1.19
LIMA1-213ENST00000552720 TRAPPC9Q96Q05 1148 aa7.63□□□□□ -1.19
LIMA1-213ENST00000552720 SLC2A13Q96QE2 648 aa7.63□□□□□ -1.19
LIMA1-213ENST00000552720 GCNAQ96QF7 691 aa7.63□□□□□ -1.19
LIMA1-213ENST00000552720 FERMT1Q9BQL6 677 aa7.63□□□□□ -1.19
LIMA1-213ENST00000552720 ACE2Q9BYF1 805 aaPredicted RBP7.63□□□□□ -1.19
LIMA1-213ENST00000552720 OXSMQ9NWU1 459 aa7.63□□□□□ -1.19
LIMA1-213ENST00000552720 DDIT4Q9NX09 232 aa7.63□□□□□ -1.19
LIMA1-213ENST00000552720 PDP2Q9P2J9 529 aa7.63□□□□□ -1.19
LIMA1-213ENST00000552720 ZDHHC2Q9UIJ5 367 aa7.63□□□□□ -1.19
LIMA1-213ENST00000552720 STAP1Q9ULZ2 295 aa7.63□□□□□ -1.19
LIMA1-213ENST00000552720 ARHGAP26Q9UNA1 814 aa7.63□□□□□ -1.19
LIMA1-213ENST00000552720 IPPQ9Y573 584 aa7.63□□□□□ -1.19
LIMA1-213ENST00000552720 CDY2AQ9Y6F7 541 aa7.63□□□□□ -1.19
LIMA1-213ENST00000552720 CDY1Q9Y6F8 540 aa7.63□□□□□ -1.19
LIMA1-213ENST00000552720 SCN4AP35499 1836 aa7.63□□□□□ -1.19
LIMA1-213ENST00000552720 HTTP42858 3142 aa7.63□□□□□ -1.19
LIMA1-213ENST00000552720 A0A1B0GVG6 124 aa7.63□□□□□ -1.19
LIMA1-213ENST00000552720 MYBPHLA2RUH7 354 aa7.63□□□□□ -1.19
LIMA1-213ENST00000552720 PTGESO14684 152 aa7.63□□□□□ -1.19
LIMA1-213ENST00000552720 CFLARO15519 480 aa7.63□□□□□ -1.19
LIMA1-213ENST00000552720 TREHO43280 583 aa7.63□□□□□ -1.19
LIMA1-213ENST00000552720 GRID2O43424 1007 aa7.63□□□□□ -1.19
LIMA1-213ENST00000552720 AP1G2O75843 785 aa7.63□□□□□ -1.19
LIMA1-213ENST00000552720 MT-CYBP00156 380 aaPredicted RBP7.63□□□□□ -1.19
LIMA1-213ENST00000552720 JCHAINP01591 159 aa7.63□□□□□ -1.19
LIMA1-213ENST00000552720 CD4P01730 458 aa7.63□□□□□ -1.19
LIMA1-213ENST00000552720 UQCRBP14927 111 aa7.63□□□□□ -1.19
LIMA1-213ENST00000552720 DPP6P42658 865 aa7.63□□□□□ -1.19
LIMA1-213ENST00000552720 GRIA4P48058 902 aa7.63□□□□□ -1.19
LIMA1-213ENST00000552720 MPP1Q00013 466 aa7.63□□□□□ -1.19
LIMA1-213ENST00000552720 CTBP1Q13363 440 aa7.63□□□□□ -1.19
LIMA1-213ENST00000552720 MED21Q13503 144 aa7.63□□□□□ -1.19
LIMA1-213ENST00000552720 SNX17Q15036 470 aa7.63□□□□□ -1.19
LIMA1-213ENST00000552720 DGKDQ16760 1214 aa7.63□□□□□ -1.19
LIMA1-213ENST00000552720 CNPY1Q3B7I2 92 aa7.63□□□□□ -1.19
LIMA1-213ENST00000552720 SV2CQ496J9 727 aa7.63□□□□□ -1.19
LIMA1-213ENST00000552720 DUSP28Q4G0W2 176 aa7.63□□□□□ -1.19
LIMA1-213ENST00000552720 ARL13AQ5H913 290 aaPredicted RBP7.63□□□□□ -1.19
LIMA1-213ENST00000552720 ZNF280DQ6N043 979 aa7.63□□□□□ -1.19
LIMA1-213ENST00000552720 ACAD11Q709F0 780 aa7.63□□□□□ -1.19
LIMA1-213ENST00000552720 LIMS2Q7Z4I7 341 aa7.63□□□□□ -1.19
LIMA1-213ENST00000552720 DPP9Q86TI2 863 aa7.63□□□□□ -1.19
LIMA1-213ENST00000552720 SLC41A1Q8IVJ1 513 aa7.63□□□□□ -1.19
LIMA1-213ENST00000552720 MFSD6LQ8IWD5 586 aa7.63□□□□□ -1.19
LIMA1-213ENST00000552720 DENND6AQ8IWF6 608 aa7.63□□□□□ -1.19
LIMA1-213ENST00000552720 CNTD1Q8N815 330 aa7.63□□□□□ -1.19
LIMA1-213ENST00000552720 SMG8Q8ND04 991 aaKnown RBP7.63□□□□□ -1.19
LIMA1-213ENST00000552720 FAM156AQ8NDB6 213 aa7.63□□□□□ -1.19
LIMA1-213ENST00000552720 SHCBP1Q8NEM2 672 aa7.63□□□□□ -1.19
LIMA1-213ENST00000552720 SMOQ99835 787 aa7.63□□□□□ -1.19
LIMA1-213ENST00000552720 OMDQ99983 421 aa7.63□□□□□ -1.19
LIMA1-213ENST00000552720 MCMBPQ9BTE3 642 aa7.63□□□□□ -1.19
LIMA1-213ENST00000552720 C1QTNF1Q9BXJ1 281 aa7.63□□□□□ -1.19
LIMA1-213ENST00000552720 FTHL17Q9BXU8 183 aa7.63□□□□□ -1.19
LIMA1-213ENST00000552720 INPP5FQ9Y2H2 1132 aa7.63□□□□□ -1.19
LIMA1-213ENST00000552720 AK5Q9Y6K8 562 aa7.63□□□□□ -1.19
LIMA1-213ENST00000552720 MYOCOSA0A1B0GUC4 107 aa7.62□□□□□ -1.19
LIMA1-213ENST00000552720 MATN2O00339 956 aa7.62□□□□□ -1.19
LIMA1-213ENST00000552720 FBXO21O94952 628 aa7.62□□□□□ -1.19
LIMA1-213ENST00000552720 SLC35E2BP0CK96 405 aa7.62□□□□□ -1.19
LIMA1-213ENST00000552720 MYL4P12829 197 aa7.62□□□□□ -1.19
LIMA1-213ENST00000552720 VCLP18206 1134 aa7.62□□□□□ -1.19
LIMA1-213ENST00000552720 XRCC1P18887 633 aaPredicted RBP7.62□□□□□ -1.19
LIMA1-213ENST00000552720 CDK7P50613 346 aa7.62□□□□□ -1.19
LIMA1-213ENST00000552720 THOP1P52888 689 aa7.62□□□□□ -1.19
LIMA1-213ENST00000552720 DAOAP59103 153 aa7.62□□□□□ -1.19
LIMA1-213ENST00000552720 CCNA1P78396 465 aa7.62□□□□□ -1.19
LIMA1-213ENST00000552720 MRPS22P82650 360 aaKnown RBP7.62□□□□□ -1.19
LIMA1-213ENST00000552720 PDCD2Q16342 344 aaPredicted RBP7.62□□□□□ -1.19
LIMA1-213ENST00000552720 KDELC2Q7Z4H8 507 aa7.62□□□□□ -1.19
LIMA1-213ENST00000552720 CEP97Q8IW35 865 aa7.62□□□□□ -1.19
LIMA1-213ENST00000552720 LSMEM2Q8N112 164 aa7.62□□□□□ -1.19
LIMA1-213ENST00000552720 NPLOC4Q8TAT6 608 aa7.62□□□□□ -1.19
LIMA1-213ENST00000552720 ZSCAN18Q8TBC5 510 aaPredicted RBP7.62□□□□□ -1.19
LIMA1-213ENST00000552720 RCN3Q96D15 328 aa7.62□□□□□ -1.19
LIMA1-213ENST00000552720 SGF29Q96ES7 293 aa7.62□□□□□ -1.19
LIMA1-213ENST00000552720 MAML3Q96JK9 1138 aa7.62□□□□□ -1.19
LIMA1-213ENST00000552720 SCYL1Q96KG9 808 aa7.62□□□□□ -1.19
LIMA1-213ENST00000552720 RTKNQ9BST9 563 aa7.62□□□□□ -1.19
LIMA1-213ENST00000552720 ILKAPQ9H0C8 392 aaPredicted RBP7.62□□□□□ -1.19
LIMA1-213ENST00000552720 TKTL2Q9H0I9 626 aa7.62□□□□□ -1.19
LIMA1-213ENST00000552720 GBA3Q9H227 469 aa7.62□□□□□ -1.19
LIMA1-213ENST00000552720 SUDS3Q9H7L9 328 aaPredicted RBP7.62□□□□□ -1.19
LIMA1-213ENST00000552720 ZDHHC7Q9NXF8 308 aa7.62□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms