RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 TCN1P20061 433 aaPredicted RBP5.52□□□□□ -1.53
LIMA1-212ENST00000552491 LMO2P25791 158 aa5.52□□□□□ -1.53
LIMA1-212ENST00000552491 ADORA2BP29275 332 aa5.52□□□□□ -1.53
LIMA1-212ENST00000552491 GLRBP48167 497 aa5.52□□□□□ -1.53
LIMA1-212ENST00000552491 GMPSP49915 693 aaPredicted RBP5.52□□□□□ -1.53
LIMA1-212ENST00000552491 SERPINB8P50452 374 aa5.52□□□□□ -1.53
LIMA1-212ENST00000552491 SCNN1BP51168 640 aa5.52□□□□□ -1.53
LIMA1-212ENST00000552491 PPP2R5DQ14738 602 aa5.52□□□□□ -1.53
LIMA1-212ENST00000552491 ARL13AQ5H913 290 aaPredicted RBP5.52□□□□□ -1.53
LIMA1-212ENST00000552491 CERCAMQ5T4B2 595 aa5.52□□□□□ -1.53
LIMA1-212ENST00000552491 ZNF618Q5T7W0 954 aa5.52□□□□□ -1.53
LIMA1-212ENST00000552491 FAM72AQ5TYM5 149 aa5.52□□□□□ -1.53
LIMA1-212ENST00000552491 FAM72DQ6L9T8 149 aa5.52□□□□□ -1.53
LIMA1-212ENST00000552491 B3GNT6Q6ZMB0 384 aa5.52□□□□□ -1.53
LIMA1-212ENST00000552491 BNC2Q6ZN30 1099 aaPredicted RBP5.52□□□□□ -1.53
LIMA1-212ENST00000552491 FAM43BQ6ZT52 329 aaPredicted RBP5.52□□□□□ -1.53
LIMA1-212ENST00000552491 AMIGO2Q86SJ2 522 aa5.52□□□□□ -1.53
LIMA1-212ENST00000552491 TMEM135Q86UB9 458 aa5.52□□□□□ -1.53
LIMA1-212ENST00000552491 FAM72BQ86X60 149 aa5.52□□□□□ -1.53
LIMA1-212ENST00000552491 TMEM126BQ8IUX1 230 aa5.52□□□□□ -1.53
LIMA1-212ENST00000552491 TTC39CQ8N584 583 aa5.52□□□□□ -1.53
LIMA1-212ENST00000552491 RNF169Q8NCN4 708 aa5.52□□□□□ -1.53
LIMA1-212ENST00000552491 CCNYQ8ND76 341 aa5.52□□□□□ -1.53
LIMA1-212ENST00000552491 URGCPQ8TCY9 931 aa5.52□□□□□ -1.53
LIMA1-212ENST00000552491 AFG1LQ8WV93 481 aa5.52□□□□□ -1.53
LIMA1-212ENST00000552491 TMIGD2Q96BF3 282 aa5.52□□□□□ -1.53
LIMA1-212ENST00000552491 KLRG1Q96E93 195 aa5.52□□□□□ -1.53
LIMA1-212ENST00000552491 LRGUKQ96M69 825 aa5.52□□□□□ -1.53
LIMA1-212ENST00000552491 SPATA33Q96N06 139 aa5.52□□□□□ -1.53
LIMA1-212ENST00000552491 SERPINI1Q99574 410 aa5.52□□□□□ -1.53
LIMA1-212ENST00000552491 NPAS2Q99743 824 aa5.52□□□□□ -1.53
LIMA1-212ENST00000552491 C1QTNF1Q9BXJ1 281 aa5.52□□□□□ -1.53
LIMA1-212ENST00000552491 UNKQ9C0B0 810 aaKnown RBP5.52□□□□□ -1.53
LIMA1-212ENST00000552491 SUDS3Q9H7L9 328 aaPredicted RBP5.52□□□□□ -1.53
LIMA1-212ENST00000552491 ZNF696Q9H7X3 374 aa5.52□□□□□ -1.53
LIMA1-212ENST00000552491 NMRAL1Q9HBL8 299 aa5.52□□□□□ -1.53
LIMA1-212ENST00000552491 ANLNQ9NQW6 1124 aa5.52□□□□□ -1.53
LIMA1-212ENST00000552491 EIF2B3Q9NR50 452 aaKnown RBP5.52□□□□□ -1.53
LIMA1-212ENST00000552491 PDGFCQ9NRA1 345 aa5.52□□□□□ -1.53
LIMA1-212ENST00000552491 PRMT7Q9NVM4 692 aaPredicted RBP5.52□□□□□ -1.53
LIMA1-212ENST00000552491 OXSMQ9NWU1 459 aa5.52□□□□□ -1.53
LIMA1-212ENST00000552491 PLK2Q9NYY3 685 aa5.52□□□□□ -1.53
LIMA1-212ENST00000552491 COX16Q9P0S2 106 aa5.52□□□□□ -1.53
LIMA1-212ENST00000552491 TXNDC16Q9P2K2 825 aa5.52□□□□□ -1.53
LIMA1-212ENST00000552491 TUBGCP4Q9UGJ1 667 aa5.52□□□□□ -1.53
LIMA1-212ENST00000552491 FZD10Q9ULW2 581 aa5.52□□□□□ -1.53
LIMA1-212ENST00000552491 RAB26Q9ULW5 256 aa5.52□□□□□ -1.53
LIMA1-212ENST00000552491 PRPF19Q9UMS4 504 aaKnown RBP5.52□□□□□ -1.53
LIMA1-212ENST00000552491 RNF11Q9Y3C5 154 aa5.52□□□□□ -1.53
LIMA1-212ENST00000552491 CENPFP49454 3210 aa5.52□□□□□ -1.53
LIMA1-212ENST00000552491 POLR2AP24928 1970 aaKnown RBP5.52□□□□□ -1.53
LIMA1-212ENST00000552491 TCAF2A6NFQ2 919 aa5.51□□□□□ -1.53
LIMA1-212ENST00000552491 HACD1B0YJ81 288 aa5.51□□□□□ -1.53
LIMA1-212ENST00000552491 BTBD19C9JJ37 291 aa5.51□□□□□ -1.53
LIMA1-212ENST00000552491 PHGDHO43175 533 aaKnown RBP5.51□□□□□ -1.53
LIMA1-212ENST00000552491 STAU1O95793 577 aaKnown RBP5.51□□□□□ -1.53
LIMA1-212ENST00000552491 TPH1P17752 444 aa5.51□□□□□ -1.53
LIMA1-212ENST00000552491 SPRP35270 261 aaPredicted RBP5.51□□□□□ -1.53
LIMA1-212ENST00000552491 GARSP41250 739 aaKnown RBP5.51□□□□□ -1.53
LIMA1-212ENST00000552491 GRIA4P48058 902 aa5.51□□□□□ -1.53
LIMA1-212ENST00000552491 GLUD2P49448 558 aa5.51□□□□□ -1.53
LIMA1-212ENST00000552491 CSRP3P50461 194 aa5.51□□□□□ -1.53
LIMA1-212ENST00000552491 NAGLUP54802 743 aa5.51□□□□□ -1.53
LIMA1-212ENST00000552491 HPCAP84074 193 aa5.51□□□□□ -1.53
LIMA1-212ENST00000552491 CYLC2Q14093 348 aaPredicted RBP5.51□□□□□ -1.53
LIMA1-212ENST00000552491 GRM3Q14832 879 aa5.51□□□□□ -1.53
LIMA1-212ENST00000552491 FAM187BQ17R55 369 aa5.51□□□□□ -1.53
LIMA1-212ENST00000552491 USP41Q3LFD5 358 aa5.51□□□□□ -1.53
LIMA1-212ENST00000552491 TMEM259Q4ZIN3 620 aa5.51□□□□□ -1.53
LIMA1-212ENST00000552491 GLRA4Q5JXX5 417 aa5.51□□□□□ -1.53
LIMA1-212ENST00000552491 SPANXN3Q5MJ09 141 aa5.51□□□□□ -1.53
LIMA1-212ENST00000552491 IL23RQ5VWK5 629 aa5.51□□□□□ -1.53
LIMA1-212ENST00000552491 DCAF15Q66K64 600 aa5.51□□□□□ -1.53
LIMA1-212ENST00000552491 OLFML2BQ68BL8 750 aa5.51□□□□□ -1.53
LIMA1-212ENST00000552491 PID1Q7Z2X4 250 aa5.51□□□□□ -1.53
LIMA1-212ENST00000552491 LCA5Q86VQ0 697 aa5.51□□□□□ -1.53
LIMA1-212ENST00000552491 RIOX2Q8IUF8 465 aa5.51□□□□□ -1.53
LIMA1-212ENST00000552491 DEFB106AQ8N104 65 aa5.51□□□□□ -1.53
LIMA1-212ENST00000552491 AHI1Q8N157 1196 aa5.51□□□□□ -1.53
LIMA1-212ENST00000552491 SPATA6LQ8N4H0 392 aa5.51□□□□□ -1.53
LIMA1-212ENST00000552491 CATSPER1Q8NEC5 780 aa5.51□□□□□ -1.53
LIMA1-212ENST00000552491 RP9Q8TA86 221 aaKnown RBP5.51□□□□□ -1.53
LIMA1-212ENST00000552491 ZSCAN18Q8TBC5 510 aaPredicted RBP5.51□□□□□ -1.53
LIMA1-212ENST00000552491 FAM110BQ8TC76 370 aa5.51□□□□□ -1.53
LIMA1-212ENST00000552491 RNF139Q8WU17 664 aa5.51□□□□□ -1.53
LIMA1-212ENST00000552491 ATP6V1E2Q96A05 226 aa5.51□□□□□ -1.53
LIMA1-212ENST00000552491 C18orf25Q96B23 403 aaPredicted RBP5.51□□□□□ -1.53
LIMA1-212ENST00000552491 MLPHQ9BV36 600 aaPredicted RBP5.51□□□□□ -1.53
LIMA1-212ENST00000552491 ACE2Q9BYF1 805 aaPredicted RBP5.51□□□□□ -1.53
LIMA1-212ENST00000552491 MRPS26Q9BYN8 205 aaKnown RBP5.51□□□□□ -1.53
LIMA1-212ENST00000552491 SEMA6AQ9H2E6 1030 aa5.51□□□□□ -1.53
LIMA1-212ENST00000552491 LIN28AQ9H9Z2 209 aaKnown RBP5.51□□□□□ -1.53
LIMA1-212ENST00000552491 WDR41Q9HAD4 459 aa5.51□□□□□ -1.53
LIMA1-212ENST00000552491 CHRAC1Q9NRG0 131 aa5.51□□□□□ -1.53
LIMA1-212ENST00000552491 CEPT1Q9Y6K0 416 aa5.51□□□□□ -1.53
LIMA1-212ENST00000552491 DNAH12Q6ZR08 3092 aa5.51□□□□□ -1.53
LIMA1-212ENST00000552491 TANC1Q9C0D5 1861 aa5.51□□□□□ -1.53
LIMA1-212ENST00000552491 ZSWIM8A7E2V4 1837 aa5.51□□□□□ -1.53
LIMA1-212ENST00000552491 TMEM114B3SHH9 223 aa5.51□□□□□ -1.53
LIMA1-212ENST00000552491 TARM1B6A8C7 271 aa5.51□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms