RNA–Protein interactions for RNA: ENST00000549414.6

CUX1-213, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,452 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-213ENST00000549414 VPS9D1Q9Y2B5 631 aa16.53■□□□□ 0.24
CUX1-213ENST00000549414 PCDHB12Q9Y5F1 795 aa16.53■□□□□ 0.24
CUX1-213ENST00000549414 CFAP99D6REC4 459 aa16.53■□□□□ 0.24
CUX1-213ENST00000549414 SP100P23497 879 aaPredicted RBP16.53■□□□□ 0.24
CUX1-213ENST00000549414 RPL9P32969 192 aaKnown RBP16.53■□□□□ 0.24
CUX1-213ENST00000549414 ADCK2Q7Z695 626 aa16.53■□□□□ 0.24
CUX1-213ENST00000549414 CFAP52Q8N1V2 620 aa16.53■□□□□ 0.24
CUX1-213ENST00000549414 SPATA22Q8NHS9 363 aa16.53■□□□□ 0.24
CUX1-213ENST00000549414 ADGRE3Q9BY15 652 aa16.53■□□□□ 0.24
CUX1-213ENST00000549414 ASPSCR1Q9BZE9 553 aa16.53■□□□□ 0.24
CUX1-213ENST00000549414 TM6SF2Q9BZW4 377 aa16.53■□□□□ 0.24
CUX1-213ENST00000549414 CAAP1Q9H8G2 361 aa16.53■□□□□ 0.24
CUX1-213ENST00000549414 RABGEF1Q9UJ41 708 aa16.53■□□□□ 0.24
CUX1-213ENST00000549414 C4BP0C0L5 1744 aa16.53■□□□□ 0.24
CUX1-213ENST00000549414 GRIA1P42261 906 aa16.53■□□□□ 0.24
CUX1-213ENST00000549414 XRCC4Q13426 336 aa16.53■□□□□ 0.24
CUX1-213ENST00000549414 CYP2R1Q6VVX0 501 aa16.53■□□□□ 0.24
CUX1-213ENST00000549414 MCRS1Q96EZ8 462 aa16.53■□□□□ 0.24
CUX1-213ENST00000549414 TMEM109Q9BVC6 243 aa16.53■□□□□ 0.24
CUX1-213ENST00000549414 POLR1EQ9GZS1 481 aaKnown RBP16.53■□□□□ 0.24
CUX1-213ENST00000549414 IGFLR1Q9H665 355 aa16.53■□□□□ 0.24
CUX1-213ENST00000549414 UBA2Q9UBT2 640 aaPredicted RBP16.53■□□□□ 0.24
CUX1-213ENST00000549414 PTPRZ1P23471 2315 aaPredicted RBP16.52■□□□□ 0.24
CUX1-213ENST00000549414 hCG_2014768A0A024R1R8 64 aa16.52■□□□□ 0.24
CUX1-213ENST00000549414 KLRC2P26717 231 aa16.52■□□□□ 0.24
CUX1-213ENST00000549414 EPHA3P29320 983 aa16.52■□□□□ 0.24
CUX1-213ENST00000549414 CRABP2P29373 138 aa16.52■□□□□ 0.24
CUX1-213ENST00000549414 EEF1DP29692 281 aaKnown RBP16.52■□□□□ 0.24
CUX1-213ENST00000549414 PPP3CCP48454 512 aa16.52■□□□□ 0.24
CUX1-213ENST00000549414 PCDH20Q8N6Y1 951 aaKnown RBP16.52■□□□□ 0.24
CUX1-213ENST00000549414 SLC35B2Q8TB61 432 aa16.52■□□□□ 0.24
CUX1-213ENST00000549414 ZSCAN18Q8TBC5 510 aaPredicted RBP16.52■□□□□ 0.24
CUX1-213ENST00000549414 ECSITQ9BQ95 431 aa16.52■□□□□ 0.24
CUX1-213ENST00000549414 ATP6AP2A0A1C7CYW4 349 aa16.52■□□□□ 0.24
CUX1-213ENST00000549414 SLCO1B7G3V0H7 640 aa16.52■□□□□ 0.24
CUX1-213ENST00000549414 ATP6AP2O75787 350 aa16.52■□□□□ 0.24
CUX1-213ENST00000549414 LRIG2O94898 1065 aa16.52■□□□□ 0.24
CUX1-213ENST00000549414 METTL18O95568 372 aa16.52■□□□□ 0.24
CUX1-213ENST00000549414 ACADSP16219 412 aa16.52■□□□□ 0.24
CUX1-213ENST00000549414 EPHB3P54753 998 aa16.52■□□□□ 0.24
CUX1-213ENST00000549414 WASHC2DQ5SRD0 308 aa16.52■□□□□ 0.24
CUX1-213ENST00000549414 IYDQ6PHW0 289 aa16.52■□□□□ 0.24
CUX1-213ENST00000549414 FAR2Q96K12 515 aa16.52■□□□□ 0.24
CUX1-213ENST00000549414 CAPNS2Q96L46 248 aa16.52■□□□□ 0.24
CUX1-213ENST00000549414 RHOBTB2Q9BYZ6 727 aa16.52■□□□□ 0.24
CUX1-213ENST00000549414 XPR1Q9UBH6 696 aa16.52■□□□□ 0.24
CUX1-213ENST00000549414 FBXO5Q9UKT4 447 aa16.52■□□□□ 0.24
CUX1-213ENST00000549414 KRT36O76013 467 aa16.52■□□□□ 0.23
CUX1-213ENST00000549414 HNRNPLP14866 589 aaKnown RBP eCLIP16.52■□□□□ 0.236e-8■■■■■ 28.9
CUX1-213ENST00000549414 ITGALP20701 1170 aa16.52■□□□□ 0.23
CUX1-213ENST00000549414 IGFBP4P22692 258 aa16.52■□□□□ 0.23
CUX1-213ENST00000549414 CDK7P50613 346 aa16.52■□□□□ 0.23
CUX1-213ENST00000549414 WNT3AP56704 352 aa16.52■□□□□ 0.23
CUX1-213ENST00000549414 VSTM1Q6UX27 236 aa16.52■□□□□ 0.23
CUX1-213ENST00000549414 TPGS1Q6ZTW0 290 aa16.52■□□□□ 0.23
CUX1-213ENST00000549414 CTU1Q7Z7A3 348 aaKnown RBP16.52■□□□□ 0.23
CUX1-213ENST00000549414 FBXO39Q8N4B4 442 aa16.52■□□□□ 0.23
CUX1-213ENST00000549414 OLFM3Q96PB7 478 aa16.52■□□□□ 0.23
CUX1-213ENST00000549414 ACOX2Q99424 681 aa16.52■□□□□ 0.23
CUX1-213ENST00000549414 NMUR2Q9GZQ4 415 aa16.52■□□□□ 0.23
CUX1-213ENST00000549414 CCDC134Q9H6E4 229 aa16.52■□□□□ 0.23
CUX1-213ENST00000549414 TMPRSS4Q9NRS4 437 aa16.52■□□□□ 0.23
CUX1-213ENST00000549414 ARL8BQ9NVJ2 186 aa16.52■□□□□ 0.23
CUX1-213ENST00000549414 DTLQ9NZJ0 730 aa16.52■□□□□ 0.23
CUX1-213ENST00000549414 KIF17Q9P2E2 1029 aa16.52■□□□□ 0.23
CUX1-213ENST00000549414 CCL22O00626 93 aa16.51■□□□□ 0.23
CUX1-213ENST00000549414 FGF10O15520 208 aaPredicted RBP16.51■□□□□ 0.23
CUX1-213ENST00000549414 UGT1A9O60656 530 aa16.51■□□□□ 0.23
CUX1-213ENST00000549414 F7P08709 466 aaPredicted RBP16.51■□□□□ 0.23
CUX1-213ENST00000549414 FOXN2P32314 431 aa16.51■□□□□ 0.23
CUX1-213ENST00000549414 ATP5C1P36542 298 aaKnown RBP16.51■□□□□ 0.23
CUX1-213ENST00000549414 GRIA4P48058 902 aa16.51■□□□□ 0.23
CUX1-213ENST00000549414 SYPL2Q5VXT5 272 aa16.51■□□□□ 0.23
CUX1-213ENST00000549414 SCARA3Q6AZY7 606 aa16.51■□□□□ 0.23
CUX1-213ENST00000549414 DQX1Q8TE96 717 aaKnown RBP16.51■□□□□ 0.23
CUX1-213ENST00000549414 UGT1A7Q9HAW7 530 aa16.51■□□□□ 0.23
CUX1-213ENST00000549414 UGT1A10Q9HAW8 530 aa16.51■□□□□ 0.23
CUX1-213ENST00000549414 UGT1A8Q9HAW9 530 aa16.51■□□□□ 0.23
CUX1-213ENST00000549414 SLC17A6Q9P2U8 582 aa16.51■□□□□ 0.23
CUX1-213ENST00000549414 SNX5Q9Y5X3 404 aa16.51■□□□□ 0.23
CUX1-213ENST00000549414 LAMA4Q16363 1823 aa16.51■□□□□ 0.23
CUX1-213ENST00000549414 BTN3A1O00481 513 aa16.51■□□□□ 0.23
CUX1-213ENST00000549414 RTN3O95197 1032 aaPredicted RBP16.51■□□□□ 0.23
CUX1-213ENST00000549414 C2P06681 752 aa16.51■□□□□ 0.23
CUX1-213ENST00000549414 TSHRP16473 764 aa16.51■□□□□ 0.23
CUX1-213ENST00000549414 ITGA7Q13683 1181 aa16.51■□□□□ 0.23
CUX1-213ENST00000549414 NFYCQ13952 458 aa16.51■□□□□ 0.23
CUX1-213ENST00000549414 NR6A1Q15406 480 aa16.51■□□□□ 0.23
CUX1-213ENST00000549414 PFKFB4Q16877 469 aa16.51■□□□□ 0.23
CUX1-213ENST00000549414 AARS2Q5JTZ9 985 aaKnown RBP16.51■□□□□ 0.23
CUX1-213ENST00000549414 DENND1CQ8IV53 801 aa16.51■□□□□ 0.23
CUX1-213ENST00000549414 AZIN2Q96A70 460 aa16.51■□□□□ 0.23
CUX1-213ENST00000549414 RNPEPL1Q9HAU8 725 aa16.51■□□□□ 0.23
CUX1-213ENST00000549414 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP16.51■□□□□ 0.231e-6■■■■□ 23.3
CUX1-213ENST00000549414 A0A1W2PQH9 124 aa16.51■□□□□ 0.23
CUX1-213ENST00000549414 BCLAF3A2AJT9 711 aaKnown RBP16.51■□□□□ 0.23
CUX1-213ENST00000549414 MYO1GB0I1T2 1018 aa16.51■□□□□ 0.23
CUX1-213ENST00000549414 RPL14P50914 215 aaKnown RBP16.51■□□□□ 0.23
CUX1-213ENST00000549414 SLC34A1Q06495 639 aa16.51■□□□□ 0.23
CUX1-213ENST00000549414 ZNF618Q5T7W0 954 aa16.51■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms