RNA–Protein interactions for RNA: ENST00000548436.5

PRPF40B-208, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 2

Gene PRPF40B, Length 2,059 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-208ENST00000548436 VPS39Q96JC1 886 aa18.86■□□□□ 0.61
PRPF40B-208ENST00000548436 FCRL5Q96RD9 977 aa18.86■□□□□ 0.61
PRPF40B-208ENST00000548436 TBL1YQ9BQ87 522 aa18.86■□□□□ 0.61
PRPF40B-208ENST00000548436 SIKE1Q9BRV8 207 aa18.86■□□□□ 0.61
PRPF40B-208ENST00000548436 CATSPERBQ9H7T0 1116 aa18.86■□□□□ 0.61
PRPF40B-208ENST00000548436 GLOD4Q9HC38 313 aa18.86■□□□□ 0.61
PRPF40B-208ENST00000548436 SDAD1Q9NVU7 687 aaKnown RBP eCLIP18.86■□□□□ 0.61
PRPF40B-208ENST00000548436 ABI2Q9NYB9 513 aaPredicted RBP18.86■□□□□ 0.61
PRPF40B-208ENST00000548436 AAR2Q9Y312 384 aaKnown RBP18.86■□□□□ 0.61
PRPF40B-208ENST00000548436 PLXNA3P51805 1871 aa18.86■□□□□ 0.61
PRPF40B-208ENST00000548436 THSD7BQ9C0I4 1608 aa18.86■□□□□ 0.61
PRPF40B-208ENST00000548436 VWA8A3KMH1 1905 aa18.86■□□□□ 0.61
PRPF40B-208ENST00000548436 ARHGEF37A1IGU5 675 aa18.85■□□□□ 0.61
PRPF40B-208ENST00000548436 KCNU1A8MYU2 1149 aa18.85■□□□□ 0.61
PRPF40B-208ENST00000548436 PRR5-ARHGAP8B1AHC4 643 aa18.85■□□□□ 0.61
PRPF40B-208ENST00000548436 B2RBV5 119 aa18.85■□□□□ 0.61
PRPF40B-208ENST00000548436 MATN3O15232 486 aa18.85■□□□□ 0.61
PRPF40B-208ENST00000548436 MOCS2O96007 188 aaPredicted RBP18.85■□□□□ 0.61
PRPF40B-208ENST00000548436 C2P06681 752 aa18.85■□□□□ 0.61
PRPF40B-208ENST00000548436 TUBP50607 506 aa18.85■□□□□ 0.61
PRPF40B-208ENST00000548436 ABCE1P61221 599 aaKnown RBP18.85■□□□□ 0.61
PRPF40B-208ENST00000548436 ARHGAP8P85298 464 aa18.85■□□□□ 0.61
PRPF40B-208ENST00000548436 RCN2Q14257 317 aa18.85■□□□□ 0.61
PRPF40B-208ENST00000548436 PPP2R5DQ14738 602 aa18.85■□□□□ 0.61
PRPF40B-208ENST00000548436 KHDC1Q4VXA5 237 aaKnown RBP18.85■□□□□ 0.61
PRPF40B-208ENST00000548436 CLLU1OSQ5K130 101 aa18.85■□□□□ 0.61
PRPF40B-208ENST00000548436 DENND5AQ6IQ26 1287 aa18.85■□□□□ 0.61
PRPF40B-208ENST00000548436 IPMKQ8NFU5 416 aa18.85■□□□□ 0.61
PRPF40B-208ENST00000548436 SH3TC2Q8TF17 1288 aa18.85■□□□□ 0.61
PRPF40B-208ENST00000548436 MCUR1Q96AQ8 359 aa18.85■□□□□ 0.61
PRPF40B-208ENST00000548436 MPP6Q9NZW5 540 aa18.85■□□□□ 0.61
PRPF40B-208ENST00000548436 HS3ST4Q9Y661 456 aa18.85■□□□□ 0.61
PRPF40B-208ENST00000548436 MIA3Q5JRA6 1907 aa18.85■□□□□ 0.61
PRPF40B-208ENST00000548436 E9PAM4 449 aa18.85■□□□□ 0.61
PRPF40B-208ENST00000548436 G3V2L1 256 aa18.85■□□□□ 0.61
PRPF40B-208ENST00000548436 H0Y3Z8 333 aa18.85■□□□□ 0.61
PRPF40B-208ENST00000548436 AP3B1O00203 1094 aa18.85■□□□□ 0.61
PRPF40B-208ENST00000548436 TIMM44O43615 452 aa18.85■□□□□ 0.61
PRPF40B-208ENST00000548436 ATP5BP06576 529 aaKnown RBP18.85■□□□□ 0.61
PRPF40B-208ENST00000548436 HTR7P34969 479 aa18.85■□□□□ 0.61
PRPF40B-208ENST00000548436 HARS2P49590 506 aaKnown RBP18.85■□□□□ 0.61
PRPF40B-208ENST00000548436 CCNG1P51959 295 aa18.85■□□□□ 0.61
PRPF40B-208ENST00000548436 LZTR1Q8N653 840 aa18.85■□□□□ 0.61
PRPF40B-208ENST00000548436 RGS18Q9NS28 235 aa18.85■□□□□ 0.61
PRPF40B-208ENST00000548436 TAGLN3Q9UI15 199 aa18.85■□□□□ 0.61
PRPF40B-208ENST00000548436 TLL2Q9Y6L7 1015 aa18.85■□□□□ 0.61
PRPF40B-208ENST00000548436 HLA-DQB2P05538 268 aa18.84■□□□□ 0.61
PRPF40B-208ENST00000548436 MAP2K2P36507 400 aa18.84■□□□□ 0.61
PRPF40B-208ENST00000548436 GPR15P49685 360 aa18.84■□□□□ 0.61
PRPF40B-208ENST00000548436 CSRP3P50461 194 aa18.84■□□□□ 0.61
PRPF40B-208ENST00000548436 CDK7P50613 346 aa18.84■□□□□ 0.61
PRPF40B-208ENST00000548436 PGGT1BP53609 377 aa18.84■□□□□ 0.61
PRPF40B-208ENST00000548436 KDSRQ06136 332 aa18.84■□□□□ 0.61
PRPF40B-208ENST00000548436 DSC1Q08554 894 aa18.84■□□□□ 0.61
PRPF40B-208ENST00000548436 GRM3Q14832 879 aa18.84■□□□□ 0.61
PRPF40B-208ENST00000548436 POU6F1Q14863 301 aa18.84■□□□□ 0.61
PRPF40B-208ENST00000548436 AFMIDQ63HM1 303 aa18.84■□□□□ 0.61
PRPF40B-208ENST00000548436 PDPK2PQ6A1A2 396 aa18.84■□□□□ 0.61
PRPF40B-208ENST00000548436 NAPRTQ6XQN6 538 aa18.84■□□□□ 0.61
PRPF40B-208ENST00000548436 PCSK9Q8NBP7 692 aaKnown RBP18.84■□□□□ 0.61
PRPF40B-208ENST00000548436 RBM15BQ8NDT2 890 aaKnown RBP18.84■□□□□ 0.61
PRPF40B-208ENST00000548436 PPP4R1Q8TF05 950 aa18.84■□□□□ 0.61
PRPF40B-208ENST00000548436 LINC01599Q8WXQ3 324 aa18.84■□□□□ 0.61
PRPF40B-208ENST00000548436 FICDQ9BVA6 458 aa18.84■□□□□ 0.61
PRPF40B-208ENST00000548436 ZCWPW1Q9H0M4 648 aa18.84■□□□□ 0.61
PRPF40B-208ENST00000548436 ZNF195O14628 629 aa18.83■□□□□ 0.61
PRPF40B-208ENST00000548436 CKBP12277 381 aa18.83■□□□□ 0.61
PRPF40B-208ENST00000548436 DNAJB2P25686 324 aa18.83■□□□□ 0.61
PRPF40B-208ENST00000548436 MBTPS1Q14703 1052 aa18.83■□□□□ 0.61
PRPF40B-208ENST00000548436 KPNB1Q14974 876 aaKnown RBP18.83■□□□□ 0.61
PRPF40B-208ENST00000548436 DDR2Q16832 855 aa18.83■□□□□ 0.61
PRPF40B-208ENST00000548436 PCID2Q5JVF3 399 aa18.83■□□□□ 0.61
PRPF40B-208ENST00000548436 RABGAP1LQ5R372 815 aa18.83■□□□□ 0.61
PRPF40B-208ENST00000548436 PKN3Q6P5Z2 889 aa18.83■□□□□ 0.61
PRPF40B-208ENST00000548436 GLB1LQ6UWU2 654 aa18.83■□□□□ 0.61
PRPF40B-208ENST00000548436 ZC3HC1Q86WB0 502 aaKnown RBP18.83■□□□□ 0.61
PRPF40B-208ENST00000548436 TMPRSS6Q8IU80 811 aa18.83■□□□□ 0.61
PRPF40B-208ENST00000548436 GPR22Q99680 433 aa18.83■□□□□ 0.61
PRPF40B-208ENST00000548436 OXCT2Q9BYC2 517 aaPredicted RBP18.83■□□□□ 0.61
PRPF40B-208ENST00000548436 MMADHCQ9H3L0 296 aaPredicted RBP18.83■□□□□ 0.61
PRPF40B-208ENST00000548436 SLC39A10Q9ULF5 831 aa18.83■□□□□ 0.61
PRPF40B-208ENST00000548436 SQORQ9Y6N5 450 aa18.83■□□□□ 0.61
PRPF40B-208ENST00000548436 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP18.83■□□□□ 0.6
PRPF40B-208ENST00000548436 ANXA9O76027 345 aa18.83■□□□□ 0.6
PRPF40B-208ENST00000548436 GABRB3P28472 473 aa18.83■□□□□ 0.6
PRPF40B-208ENST00000548436 ADRA1AP35348 466 aa18.83■□□□□ 0.6
PRPF40B-208ENST00000548436 IDH3AP50213 366 aa18.83■□□□□ 0.6
PRPF40B-208ENST00000548436 PAPOLAP51003 745 aaKnown RBP18.83■□□□□ 0.6
PRPF40B-208ENST00000548436 PIK3R6Q5UE93 754 aa18.83■□□□□ 0.6
PRPF40B-208ENST00000548436 TRAF7Q6Q0C0 670 aa18.83■□□□□ 0.6
PRPF40B-208ENST00000548436 COLGALT2Q8IYK4 626 aa18.83■□□□□ 0.6
PRPF40B-208ENST00000548436 RTL3Q8N8U3 475 aaKnown RBP18.83■□□□□ 0.6
PRPF40B-208ENST00000548436 WDR60Q8WVS4 1066 aa18.83■□□□□ 0.6
PRPF40B-208ENST00000548436 ZNF570Q96NI8 536 aa18.83■□□□□ 0.6
PRPF40B-208ENST00000548436 STN1Q9H668 368 aaKnown RBP18.83■□□□□ 0.6
PRPF40B-208ENST00000548436 RBM22Q9NW64 420 aaKnown RBP eCLIP18.83■□□□□ 0.6
PRPF40B-208ENST00000548436 PALM2-AKAP2B1ALY0 433 aaPredicted RBP18.82■□□□□ 0.6
PRPF40B-208ENST00000548436 OAZ2O95190 189 aa18.82■□□□□ 0.6
PRPF40B-208ENST00000548436 ALOX15P16050 662 aaPredicted RBP18.82■□□□□ 0.6
PRPF40B-208ENST00000548436 GRK4P32298 578 aa18.82■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms