RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 DNALI1O14645 258 aaPredicted RBP5.59□□□□□ -1.51
LIMA1-203ENST00000547825 LYPLA1O75608 230 aaPredicted RBP5.59□□□□□ -1.51
LIMA1-203ENST00000547825 FESP07332 822 aa5.59□□□□□ -1.51
LIMA1-203ENST00000547825 CHRNB2P17787 502 aa5.59□□□□□ -1.51
LIMA1-203ENST00000547825 NT5C2P49902 561 aa5.59□□□□□ -1.51
LIMA1-203ENST00000547825 RAB27AP51159 221 aa5.59□□□□□ -1.51
LIMA1-203ENST00000547825 NCKAP1LP55160 1127 aa5.59□□□□□ -1.51
LIMA1-203ENST00000547825 PSMC5P62195 406 aa5.59□□□□□ -1.51
LIMA1-203ENST00000547825 RPL7AP62424 266 aaKnown RBP5.59□□□□□ -1.51
LIMA1-203ENST00000547825 C19orf57Q0VDD7 668 aa5.59□□□□□ -1.51
LIMA1-203ENST00000547825 DCTN2Q13561 401 aaKnown RBP5.59□□□□□ -1.51
LIMA1-203ENST00000547825 PCBP1Q15365 356 aaKnown RBP eCLIP5.59□□□□□ -1.51
LIMA1-203ENST00000547825 CARTPTQ16568 116 aa5.59□□□□□ -1.51
LIMA1-203ENST00000547825 ZC3H12AQ5D1E8 599 aaKnown RBP5.59□□□□□ -1.51
LIMA1-203ENST00000547825 TMEM63BQ5T3F8 832 aa5.59□□□□□ -1.51
LIMA1-203ENST00000547825 MTHFD1LQ6UB35 978 aa5.59□□□□□ -1.51
LIMA1-203ENST00000547825 RINLQ6ZS11 566 aa5.59□□□□□ -1.51
LIMA1-203ENST00000547825 ZBTB49Q6ZSB9 765 aa5.59□□□□□ -1.51
LIMA1-203ENST00000547825 ULK2Q8IYT8 1036 aa5.59□□□□□ -1.51
LIMA1-203ENST00000547825 PHACTR4Q8IZ21 702 aa5.59□□□□□ -1.51
LIMA1-203ENST00000547825 MCOLN2Q8IZK6 566 aa5.59□□□□□ -1.51
LIMA1-203ENST00000547825 USP33Q8TEY7 942 aa5.59□□□□□ -1.51
LIMA1-203ENST00000547825 UTP4Q969X6 686 aaKnown RBP5.59□□□□□ -1.51
LIMA1-203ENST00000547825 TUBGCP5Q96RT8 1024 aa5.59□□□□□ -1.51
LIMA1-203ENST00000547825 NDEL1Q9GZM8 345 aa5.59□□□□□ -1.51
LIMA1-203ENST00000547825 TMEM8AQ9HCN3 771 aa5.59□□□□□ -1.51
LIMA1-203ENST00000547825 CYP4F12Q9HCS2 524 aa5.59□□□□□ -1.51
LIMA1-203ENST00000547825 KCNH7Q9NS40 1196 aa5.59□□□□□ -1.51
LIMA1-203ENST00000547825 WRAP73Q9P2S5 460 aaPredicted RBP5.59□□□□□ -1.51
LIMA1-203ENST00000547825 ATP11BQ9Y2G3 1177 aa5.59□□□□□ -1.51
LIMA1-203ENST00000547825 VCANP13611 3396 aa5.59□□□□□ -1.51
LIMA1-203ENST00000547825 FSCN2O14926 492 aa5.59□□□□□ -1.52
LIMA1-203ENST00000547825 GSTA4O15217 222 aa5.59□□□□□ -1.52
LIMA1-203ENST00000547825 MED7O43513 233 aa5.59□□□□□ -1.52
LIMA1-203ENST00000547825 RGS9O75916 674 aaPredicted RBP5.59□□□□□ -1.52
LIMA1-203ENST00000547825 TRPC1P48995 793 aa5.59□□□□□ -1.52
LIMA1-203ENST00000547825 SLC12A3P55017 1021 aa5.59□□□□□ -1.52
LIMA1-203ENST00000547825 DRG2P55039 364 aaKnown RBP5.59□□□□□ -1.52
LIMA1-203ENST00000547825 CSE1LP55060 971 aaKnown RBP5.59□□□□□ -1.52
LIMA1-203ENST00000547825 YWHAHQ04917 246 aaPredicted RBP5.59□□□□□ -1.52
LIMA1-203ENST00000547825 SREBF2Q12772 1141 aa5.59□□□□□ -1.52
LIMA1-203ENST00000547825 USP10Q14694 798 aaKnown RBP5.59□□□□□ -1.52
LIMA1-203ENST00000547825 MAPK6Q16659 721 aa5.59□□□□□ -1.52
LIMA1-203ENST00000547825 TFDP3Q5H9I0 405 aa5.59□□□□□ -1.52
LIMA1-203ENST00000547825 OTUD3Q5T2D3 398 aaPredicted RBP5.59□□□□□ -1.52
LIMA1-203ENST00000547825 SPOCD1Q6ZMY3 1216 aa5.59□□□□□ -1.52
LIMA1-203ENST00000547825 NANOGNBQ7Z5D8 188 aa5.59□□□□□ -1.52
LIMA1-203ENST00000547825 GPR141Q7Z602 305 aa5.59□□□□□ -1.52
LIMA1-203ENST00000547825 ANKS1BQ7Z6G8 1248 aa5.59□□□□□ -1.52
LIMA1-203ENST00000547825 CLEC4FQ8N1N0 589 aa5.59□□□□□ -1.52
LIMA1-203ENST00000547825 PARP8Q8N3A8 854 aa5.59□□□□□ -1.52
LIMA1-203ENST00000547825 PCDH20Q8N6Y1 951 aaKnown RBP5.59□□□□□ -1.52
LIMA1-203ENST00000547825 GABPB2Q8TAK5 448 aaPredicted RBP5.59□□□□□ -1.52
LIMA1-203ENST00000547825 NCLNQ969V3 563 aa5.59□□□□□ -1.52
LIMA1-203ENST00000547825 LENG9Q96B70 501 aa5.59□□□□□ -1.52
LIMA1-203ENST00000547825 DHRS4Q9BTZ2 278 aa5.59□□□□□ -1.52
LIMA1-203ENST00000547825 ASPSCR1Q9BZE9 553 aa5.59□□□□□ -1.52
LIMA1-203ENST00000547825 SIK2Q9H0K1 926 aa5.59□□□□□ -1.52
LIMA1-203ENST00000547825 SAR1AQ9NR31 198 aa5.59□□□□□ -1.52
LIMA1-203ENST00000547825 CYP26B1Q9NR63 512 aa5.59□□□□□ -1.52
LIMA1-203ENST00000547825 BFARQ9NZS9 450 aa5.59□□□□□ -1.52
LIMA1-203ENST00000547825 MROH7Q68CQ1 1323 aa5.59□□□□□ -1.52
LIMA1-203ENST00000547825 MYPNQ86TC9 1320 aa5.59□□□□□ -1.52
LIMA1-203ENST00000547825 E7ENQ6 273 aa5.58□□□□□ -1.52
LIMA1-203ENST00000547825 TGFB1I1O43294 461 aa5.58□□□□□ -1.52
LIMA1-203ENST00000547825 FKBP6O75344 327 aa5.58□□□□□ -1.52
LIMA1-203ENST00000547825 SLITRK3O94933 977 aa5.58□□□□□ -1.52
LIMA1-203ENST00000547825 OAS1P00973 400 aaKnown RBP5.58□□□□□ -1.52
LIMA1-203ENST00000547825 PAEPP09466 180 aa5.58□□□□□ -1.52
LIMA1-203ENST00000547825 FAM58BPP0C7Q3 252 aa5.58□□□□□ -1.52
LIMA1-203ENST00000547825 SPATA31C1P0DKV0 1188 aa5.58□□□□□ -1.52
LIMA1-203ENST00000547825 FGFR1P11362 822 aa5.58□□□□□ -1.52
LIMA1-203ENST00000547825 GM2AP17900 193 aa5.58□□□□□ -1.52
LIMA1-203ENST00000547825 TUBP50607 506 aa5.58□□□□□ -1.52
LIMA1-203ENST00000547825 TAS2R40P59535 323 aa5.58□□□□□ -1.52
LIMA1-203ENST00000547825 ITGADQ13349 1161 aa5.58□□□□□ -1.52
LIMA1-203ENST00000547825 FUT11Q495W5 492 aa5.58□□□□□ -1.52
LIMA1-203ENST00000547825 N4BP2L1Q5TBK1 243 aaPredicted RBP5.58□□□□□ -1.52
LIMA1-203ENST00000547825 PDPK2PQ6A1A2 396 aa5.58□□□□□ -1.52
LIMA1-203ENST00000547825 BNIPLQ7Z465 357 aa5.58□□□□□ -1.52
LIMA1-203ENST00000547825 SLC26A11Q86WA9 606 aa5.58□□□□□ -1.52
LIMA1-203ENST00000547825 SNX32Q86XE0 403 aa5.58□□□□□ -1.52
LIMA1-203ENST00000547825 HPS6Q86YV9 775 aa5.58□□□□□ -1.52
LIMA1-203ENST00000547825 ADCY4Q8NFM4 1077 aa5.58□□□□□ -1.52
LIMA1-203ENST00000547825 SLC7A14Q8TBB6 771 aa5.58□□□□□ -1.52
LIMA1-203ENST00000547825 ZNF669Q96BR6 464 aaPredicted RBP5.58□□□□□ -1.52
LIMA1-203ENST00000547825 ANKRD27Q96NW4 1050 aa5.58□□□□□ -1.52
LIMA1-203ENST00000547825 FIZ1Q96SL8 496 aa5.58□□□□□ -1.52
LIMA1-203ENST00000547825 EBF3Q9H4W6 596 aa5.58□□□□□ -1.52
LIMA1-203ENST00000547825 TUFT1Q9NNX1 390 aa5.58□□□□□ -1.52
LIMA1-203ENST00000547825 ARHGEF38Q9NXL2 777 aa5.58□□□□□ -1.52
LIMA1-203ENST00000547825 KCNK4Q9NYG8 393 aa5.58□□□□□ -1.52
LIMA1-203ENST00000547825 GMPR2Q9P2T1 348 aaKnown RBP5.58□□□□□ -1.52
LIMA1-203ENST00000547825 AKT3Q9Y243 479 aa5.58□□□□□ -1.52
LIMA1-203ENST00000547825 SNX5Q9Y5X3 404 aa5.58□□□□□ -1.52
LIMA1-203ENST00000547825 RPS6KL1Q9Y6S9 549 aa5.58□□□□□ -1.52
LIMA1-203ENST00000547825 LOXHD1Q8IVV2 1947 aa5.58□□□□□ -1.52
LIMA1-203ENST00000547825 SCN10AQ9Y5Y9 1956 aa5.58□□□□□ -1.52
LIMA1-203ENST00000547825 LOC100289279A0A1B0GTE1 492 aa5.58□□□□□ -1.52
LIMA1-203ENST00000547825 ADCY6O43306 1168 aa5.58□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms