RNA–Protein interactions for RNA: ENST00000546820.5

PTCH1-213, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 864 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-213ENST00000546820 APBB3O95704 486 aa14.05□□□□□ -0.16
PTCH1-213ENST00000546820 MT-CO1P00395 513 aa14.05□□□□□ -0.16
PTCH1-213ENST00000546820 SRCP12931 536 aa14.05□□□□□ -0.16
PTCH1-213ENST00000546820 GLDCP23378 1020 aa14.05□□□□□ -0.16
PTCH1-213ENST00000546820 PRKCHP24723 683 aa14.05□□□□□ -0.16
PTCH1-213ENST00000546820 RECQLP46063 649 aaPredicted RBP14.05□□□□□ -0.16
PTCH1-213ENST00000546820 MARCKSL1P49006 195 aa14.05□□□□□ -0.16
PTCH1-213ENST00000546820 STK19P49842 368 aaPredicted RBP14.05□□□□□ -0.16
PTCH1-213ENST00000546820 IL10RBQ08334 325 aa14.05□□□□□ -0.16
PTCH1-213ENST00000546820 ANGPT1Q15389 498 aa14.05□□□□□ -0.16
PTCH1-213ENST00000546820 PPP2R5EQ16537 467 aa14.05□□□□□ -0.16
PTCH1-213ENST00000546820 TAZQ16635 292 aa14.05□□□□□ -0.16
PTCH1-213ENST00000546820 INO80DQ53TQ3 878 aaPredicted RBP14.05□□□□□ -0.16
PTCH1-213ENST00000546820 TMCO4Q5TGY1 634 aa14.05□□□□□ -0.16
PTCH1-213ENST00000546820 MEI1Q5TIA1 1274 aa14.05□□□□□ -0.16
PTCH1-213ENST00000546820 NCBP2-AS2Q69YL0 99 aa14.05□□□□□ -0.16
PTCH1-213ENST00000546820 SLC9A4Q6AI14 798 aa14.05□□□□□ -0.16
PTCH1-213ENST00000546820 TMEM92Q6UXU6 159 aa14.05□□□□□ -0.16
PTCH1-213ENST00000546820 LINGO4Q6UY18 593 aa14.05□□□□□ -0.16
PTCH1-213ENST00000546820 ARHGAP12Q8IWW6 846 aa14.05□□□□□ -0.16
PTCH1-213ENST00000546820 PGBD3Q8N328 593 aa14.05□□□□□ -0.16
PTCH1-213ENST00000546820 NPWQ8N729 165 aa14.05□□□□□ -0.16
PTCH1-213ENST00000546820 PQLC3Q8N755 202 aa14.05□□□□□ -0.16
PTCH1-213ENST00000546820 ISG20Q96AZ6 181 aaKnown RBP14.05□□□□□ -0.16
PTCH1-213ENST00000546820 MYO19Q96H55 970 aa14.05□□□□□ -0.16
PTCH1-213ENST00000546820 KCNH6Q9H252 994 aa14.05□□□□□ -0.16
PTCH1-213ENST00000546820 PRMT8Q9NR22 394 aaPredicted RBP14.05□□□□□ -0.16
PTCH1-213ENST00000546820 BCCIPQ9P287 314 aaKnown RBP eCLIP14.05□□□□□ -0.16
PTCH1-213ENST00000546820 IPO11Q9UI26 975 aaKnown RBP14.05□□□□□ -0.16
PTCH1-213ENST00000546820 PACSIN2Q9UNF0 486 aaPredicted RBP14.05□□□□□ -0.16
PTCH1-213ENST00000546820 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP14.05□□□□□ -0.16
PTCH1-213ENST00000546820 NUP205Q92621 2012 aa14.05□□□□□ -0.16
PTCH1-213ENST00000546820 ZDBF2Q9HCK1 2354 aa14.04□□□□□ -0.16
PTCH1-213ENST00000546820 CCDC163A0A0D9SF12 145 aa14.04□□□□□ -0.16
PTCH1-213ENST00000546820 A0A1W2PQF6 199 aa14.04□□□□□ -0.16
PTCH1-213ENST00000546820 TCRBV21S2A2A0A5A6 115 aa14.04□□□□□ -0.16
PTCH1-213ENST00000546820 DDX3YO15523 660 aaKnown RBP14.04□□□□□ -0.16
PTCH1-213ENST00000546820 CST8O60676 142 aa14.04□□□□□ -0.16
PTCH1-213ENST00000546820 PRAMEF11O60813 436 aa14.04□□□□□ -0.16
PTCH1-213ENST00000546820 TJP3O95049 919 aa14.04□□□□□ -0.16
PTCH1-213ENST00000546820 PYGMP11217 842 aa14.04□□□□□ -0.16
PTCH1-213ENST00000546820 KRT10P13645 584 aa14.04□□□□□ -0.16
PTCH1-213ENST00000546820 HLA-EP13747 358 aa14.04□□□□□ -0.16
PTCH1-213ENST00000546820 SERPINH1P50454 418 aaKnown RBP14.04□□□□□ -0.16
PTCH1-213ENST00000546820 ARF5P84085 180 aa14.04□□□□□ -0.16
PTCH1-213ENST00000546820 SFSWAPQ12872 951 aaKnown RBP14.04□□□□□ -0.16
PTCH1-213ENST00000546820 CAMK2GQ13555 558 aaPredicted RBP14.04□□□□□ -0.16
PTCH1-213ENST00000546820 RFTN1Q14699 578 aaPredicted RBP14.04□□□□□ -0.16
PTCH1-213ENST00000546820 ZNF528Q3MIS6 628 aa14.04□□□□□ -0.16
PTCH1-213ENST00000546820 CCDC181Q5TID7 509 aa14.04□□□□□ -0.16
PTCH1-213ENST00000546820 TIGD7Q6NT04 549 aaPredicted RBP14.04□□□□□ -0.16
PTCH1-213ENST00000546820 BBS5Q8N3I7 341 aa14.04□□□□□ -0.16
PTCH1-213ENST00000546820 ATPAF2Q8N5M1 289 aa14.04□□□□□ -0.16
PTCH1-213ENST00000546820 PLD5Q8N7P1 536 aa14.04□□□□□ -0.16
PTCH1-213ENST00000546820 OR2T3Q8NH03 318 aa14.04□□□□□ -0.16
PTCH1-213ENST00000546820 ALG3Q92685 438 aa14.04□□□□□ -0.16
PTCH1-213ENST00000546820 TRIM44Q96DX7 344 aaPredicted RBP14.04□□□□□ -0.16
PTCH1-213ENST00000546820 ZNF599Q96NL3 588 aa14.04□□□□□ -0.16
PTCH1-213ENST00000546820 BRD8Q9H0E9 1235 aa14.04□□□□□ -0.16
PTCH1-213ENST00000546820 PRSS16Q9NQE7 514 aa14.04□□□□□ -0.16
PTCH1-213ENST00000546820 HAUS2Q9NVX0 235 aa14.04□□□□□ -0.16
PTCH1-213ENST00000546820 UBA2Q9UBT2 640 aaPredicted RBP14.04□□□□□ -0.16
PTCH1-213ENST00000546820 PYCARDQ9ULZ3 195 aa14.04□□□□□ -0.16
PTCH1-213ENST00000546820 JRKLQ9Y4A0 524 aa14.04□□□□□ -0.16
PTCH1-213ENST00000546820 HEY1Q9Y5J3 304 aa14.04□□□□□ -0.16
PTCH1-213ENST00000546820 hCG_1818297A0A087WSY0 165 aa14.03□□□□□ -0.16
PTCH1-213ENST00000546820 J3KR12 359 aa14.03□□□□□ -0.16
PTCH1-213ENST00000546820 TGM2P21980 687 aa14.03□□□□□ -0.16
PTCH1-213ENST00000546820 PTPN7P35236 360 aa14.03□□□□□ -0.16
PTCH1-213ENST00000546820 DNA2P51530 1060 aa14.03□□□□□ -0.16
PTCH1-213ENST00000546820 DYNLT1P63172 113 aa14.03□□□□□ -0.16
PTCH1-213ENST00000546820 GALNT2Q10471 571 aa14.03□□□□□ -0.16
PTCH1-213ENST00000546820 BYSLQ13895 437 aaKnown RBP14.03□□□□□ -0.16
PTCH1-213ENST00000546820 PDK1Q15118 436 aa14.03□□□□□ -0.16
PTCH1-213ENST00000546820 ZNF569Q5MCW4 686 aa14.03□□□□□ -0.16
PTCH1-213ENST00000546820 C9orf64Q5T6V5 341 aa14.03□□□□□ -0.16
PTCH1-213ENST00000546820 DSG4Q86SJ6 1040 aa14.03□□□□□ -0.16
PTCH1-213ENST00000546820 PLPP6Q8IY26 295 aa14.03□□□□□ -0.16
PTCH1-213ENST00000546820 PCDH20Q8N6Y1 951 aaKnown RBP14.03□□□□□ -0.16
PTCH1-213ENST00000546820 ZNF366Q8N895 744 aa14.03□□□□□ -0.16
PTCH1-213ENST00000546820 CCNYQ8ND76 341 aa14.03□□□□□ -0.16
PTCH1-213ENST00000546820 FRS2Q8WU20 508 aa14.03□□□□□ -0.16
PTCH1-213ENST00000546820 HMGB4Q8WW32 186 aa14.03□□□□□ -0.16
PTCH1-213ENST00000546820 OR8D1Q8WZ84 308 aa14.03□□□□□ -0.16
PTCH1-213ENST00000546820 PRCCQ92733 491 aaPredicted RBP14.03□□□□□ -0.16
PTCH1-213ENST00000546820 P3H4Q92791 437 aa14.03□□□□□ -0.16
PTCH1-213ENST00000546820 PTPRN2Q92932 1015 aa14.03□□□□□ -0.16
PTCH1-213ENST00000546820 TSGA13Q96PP4 275 aa14.03□□□□□ -0.16
PTCH1-213ENST00000546820 HHIPQ96QV1 700 aa14.03□□□□□ -0.16
PTCH1-213ENST00000546820 HEMGNQ9BXL5 484 aa14.03□□□□□ -0.16
PTCH1-213ENST00000546820 OSBPL8Q9BZF1 889 aa14.03□□□□□ -0.16
PTCH1-213ENST00000546820 C2orf42Q9NWW7 574 aa14.03□□□□□ -0.16
PTCH1-213ENST00000546820 EBF1Q9UH73 591 aa14.03□□□□□ -0.16
PTCH1-213ENST00000546820 MFHAS1Q9Y4C4 1052 aa14.03□□□□□ -0.16
PTCH1-213ENST00000546820 K7ERQ8 282 aa14.02□□□□□ -0.17
PTCH1-213ENST00000546820 K7ESF4 209 aa14.02□□□□□ -0.17
PTCH1-213ENST00000546820 PPP1R12AO14974 1030 aaPredicted RBP14.02□□□□□ -0.17
PTCH1-213ENST00000546820 ALOX15BO15296 676 aa14.02□□□□□ -0.17
PTCH1-213ENST00000546820 SMAD6O43541 496 aaKnown RBP14.02□□□□□ -0.17
PTCH1-213ENST00000546820 MFSD11O43934 449 aa14.02□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms