RNA–Protein interactions for RNA: ENST00000546534.1

SCAF11-208, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 3

Gene SCAF11, Length 705 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-208ENST00000546534 ZC3H12AQ5D1E8 599 aaKnown RBP13.1□□□□□ -0.31
SCAF11-208ENST00000546534 PIP5KL1Q5T9C9 394 aa13.1□□□□□ -0.31
SCAF11-208ENST00000546534 SYPL2Q5VXT5 272 aa13.1□□□□□ -0.31
SCAF11-208ENST00000546534 FOXR1Q6PIV2 292 aa13.1□□□□□ -0.31
SCAF11-208ENST00000546534 Q6ZVU0 165 aa13.1□□□□□ -0.31
SCAF11-208ENST00000546534 TAC4Q86UU9 113 aa13.1□□□□□ -0.31
SCAF11-208ENST00000546534 CCAR2Q8N163 923 aaKnown RBP13.1□□□□□ -0.31
SCAF11-208ENST00000546534 GUF1Q8N442 669 aaKnown RBP13.1□□□□□ -0.31
SCAF11-208ENST00000546534 ERCC4Q92889 916 aaPredicted RBP13.1□□□□□ -0.31
SCAF11-208ENST00000546534 IFT43Q96FT9 208 aa13.1□□□□□ -0.31
SCAF11-208ENST00000546534 DUSP23Q9BVJ7 150 aa13.1□□□□□ -0.31
SCAF11-208ENST00000546534 EVA1BQ9NVM1 165 aa13.1□□□□□ -0.31
SCAF11-208ENST00000546534 DNAJC28Q9NX36 388 aa13.1□□□□□ -0.31
SCAF11-208ENST00000546534 COQ4Q9Y3A0 265 aa13.1□□□□□ -0.31
SCAF11-208ENST00000546534 PCDHGA8Q9Y5G5 932 aa13.1□□□□□ -0.31
SCAF11-208ENST00000546534 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP13.09□□□□□ -0.31
SCAF11-208ENST00000546534 M0QYV0 167 aa13.09□□□□□ -0.31
SCAF11-208ENST00000546534 ALOX15BO15296 676 aa13.09□□□□□ -0.31
SCAF11-208ENST00000546534 EFSO43281 561 aa13.09□□□□□ -0.31
SCAF11-208ENST00000546534 BNIP3LO60238 219 aa13.09□□□□□ -0.31
SCAF11-208ENST00000546534 CALCAP01258 141 aa13.09□□□□□ -0.31
SCAF11-208ENST00000546534 APOEP02649 317 aa13.09□□□□□ -0.31
SCAF11-208ENST00000546534 MYL1P05976 194 aa13.09□□□□□ -0.31
SCAF11-208ENST00000546534 HNRNPA2B1P22626 353 aaKnown RBP13.09□□□□□ -0.31
SCAF11-208ENST00000546534 HNRNPKP61978 463 aaKnown RBP eCLIP13.09□□□□□ -0.31
SCAF11-208ENST00000546534 LRMPQ12912 555 aa13.09□□□□□ -0.31
SCAF11-208ENST00000546534 ZNF177Q13360 481 aaPredicted RBP13.09□□□□□ -0.31
SCAF11-208ENST00000546534 CXorf57Q6NSI4 855 aaKnown RBP13.09□□□□□ -0.31
SCAF11-208ENST00000546534 ZCCHC8Q6NZY4 707 aaKnown RBP13.09□□□□□ -0.31
SCAF11-208ENST00000546534 NEK5Q6P3R8 708 aa13.09□□□□□ -0.31
SCAF11-208ENST00000546534 GUSBP11Q6P575 273 aa13.09□□□□□ -0.31
SCAF11-208ENST00000546534 GCNT7Q6ZNI0 430 aa13.09□□□□□ -0.31
SCAF11-208ENST00000546534 ABI3BPQ7Z7G0 1075 aa13.09□□□□□ -0.31
SCAF11-208ENST00000546534 HORMAD1Q86X24 394 aa13.09□□□□□ -0.31
SCAF11-208ENST00000546534 ARRDC3Q96B67 414 aa13.09□□□□□ -0.31
SCAF11-208ENST00000546534 FAM149B1Q96BN6 582 aa13.09□□□□□ -0.31
SCAF11-208ENST00000546534 GRAMD1AQ96CP6 724 aa13.09□□□□□ -0.31
SCAF11-208ENST00000546534 ALG14Q96F25 216 aa13.09□□□□□ -0.31
SCAF11-208ENST00000546534 BTN2A3PQ96KV6 586 aa13.09□□□□□ -0.31
SCAF11-208ENST00000546534 HSFY1Q96LI6 401 aa13.09□□□□□ -0.31
SCAF11-208ENST00000546534 CCNL2Q96S94 520 aaPredicted RBP13.09□□□□□ -0.31
SCAF11-208ENST00000546534 ZFR2Q9UPR6 939 aaKnown RBP13.09□□□□□ -0.31
SCAF11-208ENST00000546534 F5H5T6 163 aa13.08□□□□□ -0.32
SCAF11-208ENST00000546534 RNF225M0QZC1 329 aaPredicted RBP13.08□□□□□ -0.32
SCAF11-208ENST00000546534 TERTO14746 1132 aaKnown RBP13.08□□□□□ -0.32
SCAF11-208ENST00000546534 TNFSF15O95150 251 aa13.08□□□□□ -0.32
SCAF11-208ENST00000546534 CTSLP07711 333 aa13.08□□□□□ -0.32
SCAF11-208ENST00000546534 PAEPP09466 180 aa13.08□□□□□ -0.32
SCAF11-208ENST00000546534 PFKFB1P16118 471 aa13.08□□□□□ -0.32
SCAF11-208ENST00000546534 BRD2P25440 801 aaKnown RBP13.08□□□□□ -0.32
SCAF11-208ENST00000546534 NFKB2Q00653 900 aa13.08□□□□□ -0.32
SCAF11-208ENST00000546534 LINC00303Q3SY05 128 aa13.08□□□□□ -0.32
SCAF11-208ENST00000546534 COLEC12Q5KU26 742 aa13.08□□□□□ -0.32
SCAF11-208ENST00000546534 TCERG1LQ5VWI1 586 aa13.08□□□□□ -0.32
SCAF11-208ENST00000546534 OR6B2Q6IFH4 312 aa13.08□□□□□ -0.32
SCAF11-208ENST00000546534 TMEM270Q6UE05 265 aa13.08□□□□□ -0.32
SCAF11-208ENST00000546534 CRTC1Q6UUV9 634 aa13.08□□□□□ -0.32
SCAF11-208ENST00000546534 RBM44Q6ZP01 1051 aaKnown RBP13.08□□□□□ -0.32
SCAF11-208ENST00000546534 Q6ZSR6 202 aa13.08□□□□□ -0.32
SCAF11-208ENST00000546534 EFL1Q7Z2Z2 1120 aaKnown RBP13.08□□□□□ -0.32
SCAF11-208ENST00000546534 CLEC14AQ86T13 490 aa13.08□□□□□ -0.32
SCAF11-208ENST00000546534 ARL14Q8N4G2 192 aa13.08□□□□□ -0.32
SCAF11-208ENST00000546534 ZNF548Q8NEK5 533 aaPredicted RBP13.08□□□□□ -0.32
SCAF11-208ENST00000546534 OR52K2Q8NGK3 314 aa13.08□□□□□ -0.32
SCAF11-208ENST00000546534 BMFQ96LC9 184 aa13.08□□□□□ -0.32
SCAF11-208ENST00000546534 PRMT1Q99873 361 aaKnown RBP13.08□□□□□ -0.32
SCAF11-208ENST00000546534 USP25Q9UHP3 1055 aa13.08□□□□□ -0.32
SCAF11-208ENST00000546534 SLC25A13Q9UJS0 675 aa13.08□□□□□ -0.32
SCAF11-208ENST00000546534 COL27A1Q8IZC6 1860 aaPredicted RBP13.08□□□□□ -0.32
SCAF11-208ENST00000546534 A0A1B0GVL5 298 aa13.07□□□□□ -0.32
SCAF11-208ENST00000546534 EME2A4GXA9 379 aaPredicted RBP13.07□□□□□ -0.32
SCAF11-208ENST00000546534 TCAF2A6NFQ2 919 aa13.07□□□□□ -0.32
SCAF11-208ENST00000546534 A6NNZ2 444 aa13.07□□□□□ -0.32
SCAF11-208ENST00000546534 KCNU1A8MYU2 1149 aa13.07□□□□□ -0.32
SCAF11-208ENST00000546534 RNF103O00237 685 aa13.07□□□□□ -0.32
SCAF11-208ENST00000546534 KPNA3O00505 521 aaPredicted RBP13.07□□□□□ -0.32
SCAF11-208ENST00000546534 CASC3O15234 703 aaKnown RBP13.07□□□□□ -0.32
SCAF11-208ENST00000546534 PCDH8O95206 1070 aa13.07□□□□□ -0.32
SCAF11-208ENST00000546534 EPB41P11171 864 aaKnown RBP13.07□□□□□ -0.32
SCAF11-208ENST00000546534 TBXAS1P24557 533 aaPredicted RBP13.07□□□□□ -0.32
SCAF11-208ENST00000546534 CLCN1P35523 988 aa13.07□□□□□ -0.32
SCAF11-208ENST00000546534 OXCT1P55809 520 aa13.07□□□□□ -0.32
SCAF11-208ENST00000546534 PITX1P78337 314 aaPredicted RBP13.07□□□□□ -0.32
SCAF11-208ENST00000546534 FZD2Q14332 565 aa13.07□□□□□ -0.32
SCAF11-208ENST00000546534 EDRF1Q3B7T1 1238 aa13.07□□□□□ -0.32
SCAF11-208ENST00000546534 DCAF17Q5H9S7 520 aaPredicted RBP13.07□□□□□ -0.32
SCAF11-208ENST00000546534 PERM1Q5SV97 790 aa13.07□□□□□ -0.32
SCAF11-208ENST00000546534 SEL1L3Q68CR1 1132 aa13.07□□□□□ -0.32
SCAF11-208ENST00000546534 PTAR1Q7Z6K3 402 aaPredicted RBP13.07□□□□□ -0.32
SCAF11-208ENST00000546534 SH2D3CQ8N5H7 860 aa13.07□□□□□ -0.32
SCAF11-208ENST00000546534 TPCN2Q8NHX9 752 aa13.07□□□□□ -0.32
SCAF11-208ENST00000546534 WDR36Q8NI36 951 aaKnown RBP13.07□□□□□ -0.32
SCAF11-208ENST00000546534 CCDC47Q96A33 483 aaKnown RBP13.07□□□□□ -0.32
SCAF11-208ENST00000546534 FEM1AQ9BSK4 669 aa13.07□□□□□ -0.32
SCAF11-208ENST00000546534 GPR27Q9NS67 375 aa13.07□□□□□ -0.32
SCAF11-208ENST00000546534 ATXN7L1Q9ULK2 861 aaPredicted RBP13.07□□□□□ -0.32
SCAF11-208ENST00000546534 PCDHB4Q9Y5E5 795 aa13.07□□□□□ -0.32
SCAF11-208ENST00000546534 OR51B4Q9Y5P0 310 aa13.07□□□□□ -0.32
SCAF11-208ENST00000546534 CSNK1G3Q9Y6M4 447 aa13.07□□□□□ -0.32
SCAF11-208ENST00000546534 TDRD6O60522 2096 aaKnown RBP13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms