RNA–Protein interactions for RNA: ENST00000545689.2

COL4A6-209, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A6, Length 6,380 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-209ENST00000545689 KLHL3Q9UH77 587 aa12.7□□□□□ -0.38
COL4A6-209ENST00000545689 PRPF19Q9UMS4 504 aaKnown RBP12.7□□□□□ -0.38
COL4A6-209ENST00000545689 SEC22BO75396 215 aa12.7□□□□□ -0.38
COL4A6-209ENST00000545689 KCNH1O95259 989 aa12.7□□□□□ -0.38
COL4A6-209ENST00000545689 LRPAP1P30533 357 aa12.7□□□□□ -0.38
COL4A6-209ENST00000545689 MATKP42679 507 aa12.7□□□□□ -0.38
COL4A6-209ENST00000545689 HADHBP55084 474 aaKnown RBP12.7□□□□□ -0.38
COL4A6-209ENST00000545689 PLIN5Q00G26 463 aa12.7□□□□□ -0.38
COL4A6-209ENST00000545689 ITFG1Q8TB96 612 aa12.7□□□□□ -0.38
COL4A6-209ENST00000545689 FNIP1Q8TF40 1166 aa12.7□□□□□ -0.38
COL4A6-209ENST00000545689 RGSL1A5PLK6 1076 aa12.7□□□□□ -0.38
COL4A6-209ENST00000545689 TRIM38O00635 465 aa12.7□□□□□ -0.38
COL4A6-209ENST00000545689 TRAFD1O14545 582 aaPredicted RBP12.7□□□□□ -0.38
COL4A6-209ENST00000545689 KRT75O95678 551 aa12.7□□□□□ -0.38
COL4A6-209ENST00000545689 TPSB2P20231 275 aa12.7□□□□□ -0.38
COL4A6-209ENST00000545689 RAB10P61026 200 aa12.7□□□□□ -0.38
COL4A6-209ENST00000545689 TPSAB1Q15661 275 aa12.7□□□□□ -0.38
COL4A6-209ENST00000545689 SSU72Q9NP77 194 aaKnown RBP12.7□□□□□ -0.38
COL4A6-209ENST00000545689 B4GALT4O60513 344 aa12.7□□□□□ -0.38
COL4A6-209ENST00000545689 BMP10O95393 424 aa12.7□□□□□ -0.38
COL4A6-209ENST00000545689 BDNFP23560 247 aa12.7□□□□□ -0.38
COL4A6-209ENST00000545689 FAM187BQ17R55 369 aa12.7□□□□□ -0.38
COL4A6-209ENST00000545689 ZCCHC8Q6NZY4 707 aaKnown RBP12.7□□□□□ -0.38
COL4A6-209ENST00000545689 KRT78Q8N1N4 520 aa12.7□□□□□ -0.38
COL4A6-209ENST00000545689 GNPTGQ9UJJ9 305 aa12.7□□□□□ -0.38
COL4A6-209ENST00000545689 TBKBP1A7MCY6 615 aa12.69□□□□□ -0.38
COL4A6-209ENST00000545689 EDF1O60869 148 aaKnown RBP12.69□□□□□ -0.38
COL4A6-209ENST00000545689 FECHP22830 423 aa12.69□□□□□ -0.38
COL4A6-209ENST00000545689 MRPS6P82932 125 aaKnown RBP12.69□□□□□ -0.38
COL4A6-209ENST00000545689 ALDH6A1Q02252 535 aaKnown RBP12.69□□□□□ -0.38
COL4A6-209ENST00000545689 STXBP5Q5T5C0 1151 aa12.69□□□□□ -0.38
COL4A6-209ENST00000545689 LRP10Q7Z4F1 713 aa12.69□□□□□ -0.38
COL4A6-209ENST00000545689 C11orf96Q7Z7L8 435 aa12.69□□□□□ -0.38
COL4A6-209ENST00000545689 PGBD3Q8N328 593 aa12.69□□□□□ -0.38
COL4A6-209ENST00000545689 USE1Q9NZ43 259 aa12.69□□□□□ -0.38
COL4A6-209ENST00000545689 PADI4Q9UM07 663 aa12.69□□□□□ -0.38
COL4A6-209ENST00000545689 FAM237BA0A1B0GVD1 139 aa12.69□□□□□ -0.38
COL4A6-209ENST00000545689 RECQL5O94762 991 aaPredicted RBP12.69□□□□□ -0.38
COL4A6-209ENST00000545689 MTA2O94776 668 aa12.69□□□□□ -0.38
COL4A6-209ENST00000545689 FGFR1P11362 822 aa12.69□□□□□ -0.38
COL4A6-209ENST00000545689 CHN2P52757 468 aa12.69□□□□□ -0.38
COL4A6-209ENST00000545689 TAS2R40P59535 323 aa12.69□□□□□ -0.38
COL4A6-209ENST00000545689 LIPMQ5VYY2 423 aa12.69□□□□□ -0.38
COL4A6-209ENST00000545689 FAM228AQ86W67 206 aa12.69□□□□□ -0.38
COL4A6-209ENST00000545689 BHLHE22Q8NFJ8 381 aaPredicted RBP12.69□□□□□ -0.38
COL4A6-209ENST00000545689 CDCA5Q96FF9 252 aa12.69□□□□□ -0.38
COL4A6-209ENST00000545689 YIPF2Q9BWQ6 316 aa12.69□□□□□ -0.38
COL4A6-209ENST00000545689 TBC1D10AQ9BXI6 508 aa12.69□□□□□ -0.38
COL4A6-209ENST00000545689 C6orf203Q9P0P8 240 aaPredicted RBP12.69□□□□□ -0.38
COL4A6-209ENST00000545689 USP20Q9Y2K6 914 aa12.69□□□□□ -0.38
COL4A6-209ENST00000545689 KPNA5O15131 536 aa12.69□□□□□ -0.38
COL4A6-209ENST00000545689 EIF2S1P05198 315 aaKnown RBP12.69□□□□□ -0.38
COL4A6-209ENST00000545689 ITGA2BP08514 1039 aa12.69□□□□□ -0.38
COL4A6-209ENST00000545689 SNRPB2P08579 225 aaKnown RBP12.69□□□□□ -0.38
COL4A6-209ENST00000545689 CREMQ03060 361 aa12.69□□□□□ -0.38
COL4A6-209ENST00000545689 INSCQ1MX18 579 aa12.69□□□□□ -0.38
COL4A6-209ENST00000545689 STRADAQ7RTN6 431 aa12.69□□□□□ -0.38
COL4A6-209ENST00000545689 ADHFE1Q8IWW8 467 aa12.69□□□□□ -0.38
COL4A6-209ENST00000545689 ADAM32Q8TC27 787 aa12.69□□□□□ -0.38
COL4A6-209ENST00000545689 TINF2Q9BSI4 451 aa12.69□□□□□ -0.38
COL4A6-209ENST00000545689 TSEN34Q9BSV6 310 aaKnown RBP12.69□□□□□ -0.38
COL4A6-209ENST00000545689 ZYG11BQ9C0D3 744 aa12.69□□□□□ -0.38
COL4A6-209ENST00000545689 PLA2G4CQ9UP65 541 aa12.69□□□□□ -0.38
COL4A6-209ENST00000545689 TGDSO95455 350 aa12.69□□□□□ -0.38
COL4A6-209ENST00000545689 SMIM10L2AP0DMW4 78 aa12.69□□□□□ -0.38
COL4A6-209ENST00000545689 SMIM10L2BP0DMW5 78 aa12.69□□□□□ -0.38
COL4A6-209ENST00000545689 CCNB1P14635 433 aa12.69□□□□□ -0.38
COL4A6-209ENST00000545689 NFKB1P19838 968 aa12.69□□□□□ -0.38
COL4A6-209ENST00000545689 BST1Q10588 318 aa12.69□□□□□ -0.38
COL4A6-209ENST00000545689 BRMS1LQ5PSV4 323 aa12.69□□□□□ -0.38
COL4A6-209ENST00000545689 WSCD1Q658N2 575 aa12.69□□□□□ -0.38
COL4A6-209ENST00000545689 CROCCP3Q8IVE0 287 aa12.69□□□□□ -0.38
COL4A6-209ENST00000545689 FAXDC2Q96IV6 333 aa12.69□□□□□ -0.38
COL4A6-209ENST00000545689 SERAC1Q96JX3 654 aa12.69□□□□□ -0.38
COL4A6-209ENST00000545689 MRPS26Q9BYN8 205 aaKnown RBP12.69□□□□□ -0.38
COL4A6-209ENST00000545689 MARCH2Q9P0N8 246 aa12.69□□□□□ -0.38
COL4A6-209ENST00000545689 PHGDHO43175 533 aaKnown RBP12.69□□□□□ -0.38
COL4A6-209ENST00000545689 ADCY6O43306 1168 aa12.69□□□□□ -0.38
COL4A6-209ENST00000545689 ATG7O95352 703 aa12.69□□□□□ -0.38
COL4A6-209ENST00000545689 PABPC1P11940 636 aaKnown RBP12.69□□□□□ -0.38
COL4A6-209ENST00000545689 C4BPBP20851 252 aa12.69□□□□□ -0.38
COL4A6-209ENST00000545689 S100A3P33764 101 aa12.69□□□□□ -0.38
COL4A6-209ENST00000545689 NOMO1Q15155 1222 aa12.69□□□□□ -0.38
COL4A6-209ENST00000545689 USP45Q70EL2 814 aa12.69□□□□□ -0.38
COL4A6-209ENST00000545689 OR5B17Q8NGF7 314 aa12.69□□□□□ -0.38
COL4A6-209ENST00000545689 HELQQ8TDG4 1101 aa12.69□□□□□ -0.38
COL4A6-209ENST00000545689 AGAP11Q8TF27 550 aa12.69□□□□□ -0.38
COL4A6-209ENST00000545689 FAM136AQ96C01 138 aa12.69□□□□□ -0.38
COL4A6-209ENST00000545689 SEPHS2Q99611 448 aa12.69□□□□□ -0.38
COL4A6-209ENST00000545689 XRN2Q9H0D6 950 aaKnown RBP eCLIP12.69□□□□□ -0.38
COL4A6-209ENST00000545689 CNGB3Q9NQW8 809 aa12.69□□□□□ -0.38
COL4A6-209ENST00000545689 CCDC167Q9P0B6 97 aa12.69□□□□□ -0.38
COL4A6-209ENST00000545689 LEF1Q9UJU2 399 aaPredicted RBP12.69□□□□□ -0.38
COL4A6-209ENST00000545689 CAMTA1Q9Y6Y1 1673 aa12.68□□□□□ -0.38
COL4A6-209ENST00000545689 SMIM22K7EJ46 135 aa12.68□□□□□ -0.38
COL4A6-209ENST00000545689 KPNA4O00629 521 aaPredicted RBP12.68□□□□□ -0.38
COL4A6-209ENST00000545689 WNT7AO00755 349 aa12.68□□□□□ -0.38
COL4A6-209ENST00000545689 DYRK3O43781 588 aa12.68□□□□□ -0.38
COL4A6-209ENST00000545689 SERPINA4P29622 427 aa12.68□□□□□ -0.38
COL4A6-209ENST00000545689 FMO4P31512 558 aa12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 58.3 ms