RNA–Protein interactions for RNA: ENST00000544504.5

YBX3-215, Transcript of Y-box binding protein 3, humanhuman

TSL 3

Gene YBX3, Length 583 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-215ENST00000544504 GEMIN4P57678 1058 aaKnown RBP9.73□□□□□ -0.85
YBX3-215ENST00000544504 RPS24P62847 133 aaKnown RBP9.73□□□□□ -0.85
YBX3-215ENST00000544504 ZXDBP98169 803 aa9.73□□□□□ -0.85
YBX3-215ENST00000544504 PPIDQ08752 370 aaKnown RBP9.73□□□□□ -0.85
YBX3-215ENST00000544504 PRKD1Q15139 912 aaPredicted RBP9.73□□□□□ -0.85
YBX3-215ENST00000544504 MLF2Q15773 248 aaPredicted RBP9.73□□□□□ -0.85
YBX3-215ENST00000544504 PREPLQ4J6C6 727 aaPredicted RBP9.73□□□□□ -0.85
YBX3-215ENST00000544504 RNF43Q68DV7 783 aa9.73□□□□□ -0.85
YBX3-215ENST00000544504 LAIR1Q6GTX8 287 aa9.73□□□□□ -0.85
YBX3-215ENST00000544504 NPNTQ6UXI9 565 aa9.73□□□□□ -0.85
YBX3-215ENST00000544504 TFAP2DQ7Z6R9 452 aa9.73□□□□□ -0.85
YBX3-215ENST00000544504 ZC3H18Q86VM9 953 aaKnown RBP9.73□□□□□ -0.85
YBX3-215ENST00000544504 JAMLQ86YT9 394 aa9.73□□□□□ -0.85
YBX3-215ENST00000544504 MFSD6LQ8IWD5 586 aa9.73□□□□□ -0.85
YBX3-215ENST00000544504 IFT20Q8IY31 132 aa9.73□□□□□ -0.85
YBX3-215ENST00000544504 ALLCQ8N6M5 410 aa9.73□□□□□ -0.85
YBX3-215ENST00000544504 NOA1Q8NC60 698 aaKnown RBP9.73□□□□□ -0.85
YBX3-215ENST00000544504 BBOF1Q8ND07 529 aa9.73□□□□□ -0.85
YBX3-215ENST00000544504 OSCP1Q8WVF1 389 aa9.73□□□□□ -0.85
YBX3-215ENST00000544504 IRF7Q92985 503 aa9.73□□□□□ -0.85
YBX3-215ENST00000544504 WBP2Q969T9 261 aa9.73□□□□□ -0.85
YBX3-215ENST00000544504 LRRC45Q96CN5 670 aa9.73□□□□□ -0.85
YBX3-215ENST00000544504 RTP4Q96DX8 246 aa9.73□□□□□ -0.85
YBX3-215ENST00000544504 PRICKLE1Q96MT3 831 aaPredicted RBP9.73□□□□□ -0.85
YBX3-215ENST00000544504 PPP1R2P1Q96PQ5 205 aa9.73□□□□□ -0.85
YBX3-215ENST00000544504 XPO6Q96QU8 1125 aaKnown RBP9.73□□□□□ -0.85
YBX3-215ENST00000544504 NELL2Q99435 816 aa9.73□□□□□ -0.85
YBX3-215ENST00000544504 FAM129AQ9BZQ8 928 aa9.73□□□□□ -0.85
YBX3-215ENST00000544504 PCDH9Q9HC56 1237 aa9.73□□□□□ -0.85
YBX3-215ENST00000544504 PRMT8Q9NR22 394 aaPredicted RBP9.73□□□□□ -0.85
YBX3-215ENST00000544504 SPHK2Q9NRA0 654 aa9.73□□□□□ -0.85
YBX3-215ENST00000544504 MARK1Q9P0L2 795 aa9.73□□□□□ -0.85
YBX3-215ENST00000544504 AMACRQ9UHK6 382 aa9.73□□□□□ -0.85
YBX3-215ENST00000544504 MTF2Q9Y483 593 aaPredicted RBP9.73□□□□□ -0.85
YBX3-215ENST00000544504 DYNC1LI1Q9Y6G9 523 aaKnown RBP9.73□□□□□ -0.85
YBX3-215ENST00000544504 NBEAQ8NFP9 2946 aa9.73□□□□□ -0.85
YBX3-215ENST00000544504 DOCK4Q8N1I0 1966 aa9.72□□□□□ -0.85
YBX3-215ENST00000544504 DOCK6Q96HP0 2047 aa9.72□□□□□ -0.85
YBX3-215ENST00000544504 RASA4BC9J798 803 aa9.72□□□□□ -0.85
YBX3-215ENST00000544504 SMAPO00193 183 aa9.72□□□□□ -0.85
YBX3-215ENST00000544504 DFFAO00273 331 aa9.72□□□□□ -0.85
YBX3-215ENST00000544504 KCNN4O15554 427 aa9.72□□□□□ -0.85
YBX3-215ENST00000544504 HOXC11O43248 304 aaPredicted RBP9.72□□□□□ -0.85
YBX3-215ENST00000544504 RASA4O43374 803 aa9.72□□□□□ -0.85
YBX3-215ENST00000544504 RAD51CO43502 376 aa9.72□□□□□ -0.85
YBX3-215ENST00000544504 NEBLO76041 1014 aa9.72□□□□□ -0.85
YBX3-215ENST00000544504 CNTN5O94779 1100 aa9.72□□□□□ -0.85
YBX3-215ENST00000544504 RETP07949 1114 aa9.72□□□□□ -0.85
YBX3-215ENST00000544504 PSMC3P17980 439 aa9.72□□□□□ -0.85
YBX3-215ENST00000544504 PMLP29590 882 aa9.72□□□□□ -0.85
YBX3-215ENST00000544504 PTGIRP43119 386 aa9.72□□□□□ -0.85
YBX3-215ENST00000544504 RPS9P46781 194 aaKnown RBP9.72□□□□□ -0.85
YBX3-215ENST00000544504 NRLP54845 237 aa9.72□□□□□ -0.85
YBX3-215ENST00000544504 DRG2P55039 364 aaKnown RBP9.72□□□□□ -0.85
YBX3-215ENST00000544504 PFKPQ01813 784 aa9.72□□□□□ -0.85
YBX3-215ENST00000544504 GNA12Q03113 381 aa9.72□□□□□ -0.85
YBX3-215ENST00000544504 GAD2Q05329 585 aa9.72□□□□□ -0.85
YBX3-215ENST00000544504 FCHO2Q0JRZ9 810 aa9.72□□□□□ -0.85
YBX3-215ENST00000544504 AP1B1Q10567 949 aa9.72□□□□□ -0.85
YBX3-215ENST00000544504 SLC10A2Q12908 348 aaPredicted RBP9.72□□□□□ -0.85
YBX3-215ENST00000544504 PTK6Q13882 451 aa9.72□□□□□ -0.85
YBX3-215ENST00000544504 DMC1Q14565 340 aa9.72□□□□□ -0.85
YBX3-215ENST00000544504 E2F5Q15329 346 aa9.72□□□□□ -0.85
YBX3-215ENST00000544504 P3H1Q32P28 736 aa9.72□□□□□ -0.85
YBX3-215ENST00000544504 SLC44A4Q53GD3 710 aa9.72□□□□□ -0.85
YBX3-215ENST00000544504 ALFQ53S48 1182 aa9.72□□□□□ -0.85
YBX3-215ENST00000544504 ARTNQ5T4W7 220 aa9.72□□□□□ -0.85
YBX3-215ENST00000544504 TSSK4Q6SA08 328 aa9.72□□□□□ -0.85
YBX3-215ENST00000544504 METTL3Q86U44 580 aaKnown RBP9.72□□□□□ -0.85
YBX3-215ENST00000544504 MFN1Q8IWA4 741 aa9.72□□□□□ -0.85
YBX3-215ENST00000544504 ARHGAP12Q8IWW6 846 aa9.72□□□□□ -0.85
YBX3-215ENST00000544504 CCDC13Q8IYE1 715 aa9.72□□□□□ -0.85
YBX3-215ENST00000544504 ADGRG2Q8IZP9 1017 aa9.72□□□□□ -0.85
YBX3-215ENST00000544504 CFAP52Q8N1V2 620 aa9.72□□□□□ -0.85
YBX3-215ENST00000544504 BBS5Q8N3I7 341 aa9.72□□□□□ -0.85
YBX3-215ENST00000544504 CARNMT1Q8N4J0 409 aa9.72□□□□□ -0.85
YBX3-215ENST00000544504 CPA6Q8N4T0 437 aa9.72□□□□□ -0.85
YBX3-215ENST00000544504 NPWQ8N729 165 aa9.72□□□□□ -0.85
YBX3-215ENST00000544504 EIF1ADQ8N9N8 165 aaKnown RBP9.72□□□□□ -0.85
YBX3-215ENST00000544504 FIBINQ8TAL6 211 aa9.72□□□□□ -0.85
YBX3-215ENST00000544504 HTR3CQ8WXA8 447 aa9.72□□□□□ -0.85
YBX3-215ENST00000544504 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP9.72□□□□□ -0.85
YBX3-215ENST00000544504 EXOC4Q96A65 974 aa9.72□□□□□ -0.85
YBX3-215ENST00000544504 CLDN23Q96B33 292 aa9.72□□□□□ -0.85
YBX3-215ENST00000544504 ZNF599Q96NL3 588 aa9.72□□□□□ -0.85
YBX3-215ENST00000544504 ERP44Q9BS26 406 aa9.72□□□□□ -0.85
YBX3-215ENST00000544504 LRRC1Q9BTT6 524 aa9.72□□□□□ -0.85
YBX3-215ENST00000544504 BBS2Q9BXC9 721 aa9.72□□□□□ -0.85
YBX3-215ENST00000544504 SLC39A8Q9C0K1 460 aa9.72□□□□□ -0.85
YBX3-215ENST00000544504 KLC2Q9H0B6 622 aa9.72□□□□□ -0.85
YBX3-215ENST00000544504 SP110Q9HB58 689 aa9.72□□□□□ -0.85
YBX3-215ENST00000544504 LTB4R2Q9NPC1 389 aa9.72□□□□□ -0.85
YBX3-215ENST00000544504 FAM114A2Q9NRY5 505 aa9.72□□□□□ -0.85
YBX3-215ENST00000544504 KIAA1522Q9P206 1035 aaPredicted RBP9.72□□□□□ -0.85
YBX3-215ENST00000544504 PAK5Q9P286 719 aa9.72□□□□□ -0.85
YBX3-215ENST00000544504 SAE1Q9UBE0 346 aaPredicted RBP9.72□□□□□ -0.85
YBX3-215ENST00000544504 ZNF212Q9UDV6 495 aa9.72□□□□□ -0.85
YBX3-215ENST00000544504 ASIC3Q9UHC3 531 aa9.72□□□□□ -0.85
YBX3-215ENST00000544504 IPO11Q9UI26 975 aaKnown RBP9.72□□□□□ -0.85
YBX3-215ENST00000544504 TRHDEQ9UKU6 1024 aa9.72□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms