RNA–Protein interactions for RNA: ENST00000543545.5

CPSF7-221, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 5

Gene CPSF7, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-221	ENST00000543545	CHRNB1	P11230	501 aa		10.36	□□□□□ -0.75
CPSF7-221	ENST00000543545	STK19	P49842	368 aa	Predicted RBP	10.36	□□□□□ -0.75
CPSF7-221	ENST00000543545	MRPS21	P82921	87 aa	Known RBP	10.36	□□□□□ -0.75
CPSF7-221	ENST00000543545	ARF5	P84085	180 aa		10.36	□□□□□ -0.75
CPSF7-221	ENST00000543545	IL10RB	Q08334	325 aa		10.36	□□□□□ -0.75
CPSF7-221	ENST00000543545	SNX1	Q13596	522 aa		10.36	□□□□□ -0.75
CPSF7-221	ENST00000543545	CCIN	Q13939	588 aa		10.36	□□□□□ -0.75
CPSF7-221	ENST00000543545	ZNF234	Q14588	700 aa		10.36	□□□□□ -0.75
CPSF7-221	ENST00000543545	TIGD7	Q6NT04	549 aa	Predicted RBP	10.36	□□□□□ -0.75
CPSF7-221	ENST00000543545	TRMT11	Q7Z4G4	463 aa	Known RBP	10.36	□□□□□ -0.75
CPSF7-221	ENST00000543545	CDKL3	Q8IVW4	592 aa	Predicted RBP	10.36	□□□□□ -0.75
CPSF7-221	ENST00000543545	CCDC13	Q8IYE1	715 aa		10.36	□□□□□ -0.75
CPSF7-221	ENST00000543545	BBS5	Q8N3I7	341 aa		10.36	□□□□□ -0.75
CPSF7-221	ENST00000543545	SYNPO	Q8N3V7	929 aa		10.36	□□□□□ -0.75
CPSF7-221	ENST00000543545	RASGEF1C	Q8N431	466 aa		10.36	□□□□□ -0.75
CPSF7-221	ENST00000543545	RYBP	Q8N488	228 aa	Predicted RBP	10.36	□□□□□ -0.75
CPSF7-221	ENST00000543545	ALLC	Q8N6M5	410 aa		10.36	□□□□□ -0.75
CPSF7-221	ENST00000543545	TXNDC5	Q8NBS9	432 aa	Known RBP	10.36	□□□□□ -0.75
CPSF7-221	ENST00000543545	RPLP0P6	Q8NHW5	317 aa		10.36	□□□□□ -0.75
CPSF7-221	ENST00000543545	ACTRT1	Q8TDG2	376 aa		10.36	□□□□□ -0.75
CPSF7-221	ENST00000543545	KCNV2	Q8TDN2	545 aa		10.36	□□□□□ -0.75
CPSF7-221	ENST00000543545	USP33	Q8TEY7	942 aa		10.36	□□□□□ -0.75
CPSF7-221	ENST00000543545	C1orf54	Q8WWF1	131 aa		10.36	□□□□□ -0.75
CPSF7-221	ENST00000543545	ATG4A	Q8WYN0	398 aa		10.36	□□□□□ -0.75
CPSF7-221	ENST00000543545	EZH1	Q92800	747 aa	Predicted RBP	10.36	□□□□□ -0.75
CPSF7-221	ENST00000543545	ERLEC1	Q96DZ1	483 aa		10.36	□□□□□ -0.75
CPSF7-221	ENST00000543545	ACOX2	Q99424	681 aa		10.36	□□□□□ -0.75
CPSF7-221	ENST00000543545	AP1M1	Q9BXS5	423 aa		10.36	□□□□□ -0.75
CPSF7-221	ENST00000543545	CACNA2D2	Q9NY47	1150 aa		10.36	□□□□□ -0.75
CPSF7-221	ENST00000543545	THAP10	Q9P2Z0	257 aa	Predicted RBP	10.36	□□□□□ -0.75
CPSF7-221	ENST00000543545	SUN2	Q9UH99	717 aa		10.36	□□□□□ -0.75
CPSF7-221	ENST00000543545	R3HDM2	Q9Y2K5	976 aa	Known RBP	10.36	□□□□□ -0.75
CPSF7-221	ENST00000543545	FCF1	Q9Y324	198 aa	Known RBP	10.36	□□□□□ -0.75
CPSF7-221	ENST00000543545	STARD13	Q9Y3M8	1113 aa		10.36	□□□□□ -0.75
CPSF7-221	ENST00000543545	ACTL7A	Q9Y615	435 aa		10.36	□□□□□ -0.75
CPSF7-221	ENST00000543545	STON1	Q9Y6Q2	735 aa		10.36	□□□□□ -0.75
CPSF7-221	ENST00000543545	DENND4C	Q5VZ89	1909 aa		10.36	□□□□□ -0.75
CPSF7-221	ENST00000543545	MYO10	Q9HD67	2058 aa		10.35	□□□□□ -0.75
CPSF7-221	ENST00000543545	TTC34	A8MYJ7	566 aa		10.35	□□□□□ -0.75
CPSF7-221	ENST00000543545	HACD1	B0YJ81	288 aa		10.35	□□□□□ -0.75
CPSF7-221	ENST00000543545	WASH3P	C4AMC7	463 aa		10.35	□□□□□ -0.75
CPSF7-221	ENST00000543545	NPC1	O15118	1278 aa		10.35	□□□□□ -0.75
CPSF7-221	ENST00000543545	MATN3	O15232	486 aa		10.35	□□□□□ -0.75
CPSF7-221	ENST00000543545	FANCG	O15287	622 aa		10.35	□□□□□ -0.75
CPSF7-221	ENST00000543545	ZBTB24	O43167	697 aa	Predicted RBP	10.35	□□□□□ -0.75
CPSF7-221	ENST00000543545	SYNCRIP	O60506	623 aa	Known RBP	10.35	□□□□□ -0.75
CPSF7-221	ENST00000543545	MAFK	O60675	156 aa		10.35	□□□□□ -0.75
CPSF7-221	ENST00000543545	ATG13	O75143	517 aa		10.35	□□□□□ -0.75
CPSF7-221	ENST00000543545	STK10	O94804	968 aa	Known RBP	10.35	□□□□□ -0.75
CPSF7-221	ENST00000543545	JCHAIN	P01591	159 aa		10.35	□□□□□ -0.75
CPSF7-221	ENST00000543545	EPHX1	P07099	455 aa		10.35	□□□□□ -0.75
CPSF7-221	ENST00000543545	DCN	P07585	359 aa	Known RBP	10.35	□□□□□ -0.75
CPSF7-221	ENST00000543545	SRC	P12931	536 aa		10.35	□□□□□ -0.75
CPSF7-221	ENST00000543545	HLA-E	P13747	358 aa		10.35	□□□□□ -0.75
CPSF7-221	ENST00000543545	HNRNPL	P14866	589 aa	Known RBP eCLIP	10.35	□□□□□ -0.75
CPSF7-221	ENST00000543545	CCNC	P24863	283 aa		10.35	□□□□□ -0.75
CPSF7-221	ENST00000543545	NTSR1	P30989	418 aa		10.35	□□□□□ -0.75
CPSF7-221	ENST00000543545	IL12RB1	P42701	662 aa		10.35	□□□□□ -0.75
CPSF7-221	ENST00000543545	KIR2DL1	P43626	348 aa	Predicted RBP	10.35	□□□□□ -0.75
CPSF7-221	ENST00000543545	RECQL	P46063	649 aa	Predicted RBP	10.35	□□□□□ -0.75
CPSF7-221	ENST00000543545	SERPINH1	P50454	418 aa	Known RBP	10.35	□□□□□ -0.75
CPSF7-221	ENST00000543545	PPID	Q08752	370 aa	Known RBP	10.35	□□□□□ -0.75
CPSF7-221	ENST00000543545	ITK	Q08881	620 aa		10.35	□□□□□ -0.75
CPSF7-221	ENST00000543545	KLF1	Q13351	362 aa	Predicted RBP	10.35	□□□□□ -0.75
CPSF7-221	ENST00000543545	XRCC4	Q13426	336 aa		10.35	□□□□□ -0.75
CPSF7-221	ENST00000543545	ZNF235	Q14590	738 aa		10.35	□□□□□ -0.75
CPSF7-221	ENST00000543545	LBR	Q14739	615 aa	Known RBP	10.35	□□□□□ -0.75
CPSF7-221	ENST00000543545	STARD3	Q14849	445 aa		10.35	□□□□□ -0.75
CPSF7-221	ENST00000543545	NOMO1	Q15155	1222 aa		10.35	□□□□□ -0.75
CPSF7-221	ENST00000543545	DLG2	Q15700	870 aa		10.35	□□□□□ -0.75
CPSF7-221	ENST00000543545	PTPRN	Q16849	979 aa		10.35	□□□□□ -0.75
CPSF7-221	ENST00000543545	INO80D	Q53TQ3	878 aa	Predicted RBP	10.35	□□□□□ -0.75
CPSF7-221	ENST00000543545	EOGT	Q5NDL2	527 aa		10.35	□□□□□ -0.75
CPSF7-221	ENST00000543545	TMCO4	Q5TGY1	634 aa		10.35	□□□□□ -0.75
CPSF7-221	ENST00000543545	MARC1	Q5VT66	337 aa		10.35	□□□□□ -0.75
CPSF7-221	ENST00000543545	METTL3	Q86U44	580 aa	Known RBP	10.35	□□□□□ -0.75
CPSF7-221	ENST00000543545	ZNF366	Q8N895	744 aa		10.35	□□□□□ -0.75
CPSF7-221	ENST00000543545	PJA1	Q8NG27	643 aa		10.35	□□□□□ -0.75
CPSF7-221	ENST00000543545	CASKIN2	Q8WXE0	1202 aa		10.35	□□□□□ -0.75
CPSF7-221	ENST00000543545	MAGOHB	Q96A72	148 aa	Known RBP	10.35	□□□□□ -0.75
CPSF7-221	ENST00000543545	PBXIP1	Q96AQ6	731 aa		10.35	□□□□□ -0.75
CPSF7-221	ENST00000543545	HDAC11	Q96DB2	347 aa		10.35	□□□□□ -0.75
CPSF7-221	ENST00000543545	MRGPRX3	Q96LB0	322 aa		10.35	□□□□□ -0.75
CPSF7-221	ENST00000543545	ZNF599	Q96NL3	588 aa		10.35	□□□□□ -0.75
CPSF7-221	ENST00000543545	OLFM3	Q96PB7	478 aa		10.35	□□□□□ -0.75
CPSF7-221	ENST00000543545	TSGA13	Q96PP4	275 aa		10.35	□□□□□ -0.75
CPSF7-221	ENST00000543545	CINP	Q9BW66	212 aa	Predicted RBP	10.35	□□□□□ -0.75
CPSF7-221	ENST00000543545	FRMD8P1	Q9BZ68	369 aa	Predicted RBP	10.35	□□□□□ -0.75
CPSF7-221	ENST00000543545	OSBPL6	Q9BZF3	934 aa		10.35	□□□□□ -0.75
CPSF7-221	ENST00000543545	C10orf88	Q9H8K7	445 aa		10.35	□□□□□ -0.75
CPSF7-221	ENST00000543545	HOMER3	Q9NSC5	361 aa		10.35	□□□□□ -0.75
CPSF7-221	ENST00000543545	HAUS2	Q9NVX0	235 aa		10.35	□□□□□ -0.75
CPSF7-221	ENST00000543545	RBM22	Q9NW64	420 aa	Known RBP eCLIP	10.35	□□□□□ -0.75	1e-6	■■■■□ 23.9
CPSF7-221	ENST00000543545	RNF14	Q9UBS8	474 aa		10.35	□□□□□ -0.75
CPSF7-221	ENST00000543545	SEPT3	Q9UH03	358 aa		10.35	□□□□□ -0.75
CPSF7-221	ENST00000543545	TTC7A	Q9ULT0	858 aa	Predicted RBP	10.35	□□□□□ -0.75
CPSF7-221	ENST00000543545	ZNF148	Q9UQR1	794 aa		10.35	□□□□□ -0.75
CPSF7-221	ENST00000543545	TTLL3	Q9Y4R7	772 aa		10.35	□□□□□ -0.75
CPSF7-221	ENST00000543545	KCNK1	O00180	336 aa		10.34	□□□□□ -0.75
CPSF7-221	ENST00000543545	MTSS1	O43312	755 aa		10.34	□□□□□ -0.75

Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms