RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 FBXO32Q969P5 355 aa16.61■□□□□ 0.25
COL4A1-204ENST00000543140 NOL6Q9H6R4 1146 aaKnown RBP16.61■□□□□ 0.25
COL4A1-204ENST00000543140 ARL8BQ9NVJ2 186 aa16.61■□□□□ 0.25
COL4A1-204ENST00000543140 ARMCX1Q9P291 453 aa16.61■□□□□ 0.25
COL4A1-204ENST00000543140 IPO11Q9UI26 975 aaKnown RBP16.61■□□□□ 0.25
COL4A1-204ENST00000543140 MYLKQ15746 1914 aa16.61■□□□□ 0.25
COL4A1-204ENST00000543140 DOCK4Q8N1I0 1966 aa16.61■□□□□ 0.25
COL4A1-204ENST00000543140 ITM2AO43736 263 aa16.61■□□□□ 0.25
COL4A1-204ENST00000543140 HAUS5O94927 633 aa16.61■□□□□ 0.25
COL4A1-204ENST00000543140 ALDH2P05091 517 aa16.61■□□□□ 0.25
COL4A1-204ENST00000543140 SAT1P21673 171 aa16.61■□□□□ 0.25
COL4A1-204ENST00000543140 YWHAQP27348 245 aa16.61■□□□□ 0.25
COL4A1-204ENST00000543140 LIMK2P53671 638 aa16.61■□□□□ 0.25
COL4A1-204ENST00000543140 TAF10Q12962 218 aa16.61■□□□□ 0.25
COL4A1-204ENST00000543140 MPP3Q13368 585 aa16.61■□□□□ 0.25
COL4A1-204ENST00000543140 CCDC91Q7Z6B0 441 aa16.61■□□□□ 0.25
COL4A1-204ENST00000543140 CRLF3Q8IUI8 442 aa16.61■□□□□ 0.25
COL4A1-204ENST00000543140 C10orf107Q8IVU9 208 aa16.61■□□□□ 0.25
COL4A1-204ENST00000543140 SKA1Q96BD8 255 aa16.61■□□□□ 0.25
COL4A1-204ENST00000543140 SLC39A13Q96H72 371 aa16.61■□□□□ 0.25
COL4A1-204ENST00000543140 CASD1Q96PB1 797 aa16.61■□□□□ 0.25
COL4A1-204ENST00000543140 FCRL5Q96RD9 977 aa16.61■□□□□ 0.25
COL4A1-204ENST00000543140 CACNG3O60359 315 aa16.6■□□□□ 0.25
COL4A1-204ENST00000543140 SNNO75324 88 aaPredicted RBP16.6■□□□□ 0.25
COL4A1-204ENST00000543140 ANXA9O76027 345 aa16.6■□□□□ 0.25
COL4A1-204ENST00000543140 SLC11A1P49279 550 aa16.6■□□□□ 0.25
COL4A1-204ENST00000543140 AQP5P55064 265 aa16.6■□□□□ 0.25
COL4A1-204ENST00000543140 IRF9Q00978 393 aa16.6■□□□□ 0.25
COL4A1-204ENST00000543140 PCLAFQ15004 111 aa16.6■□□□□ 0.25
COL4A1-204ENST00000543140 PCSK7Q16549 785 aa16.6■□□□□ 0.25
COL4A1-204ENST00000543140 TCTN1Q2MV58 587 aa16.6■□□□□ 0.25
COL4A1-204ENST00000543140 ALFQ53S48 1182 aa16.6■□□□□ 0.25
COL4A1-204ENST00000543140 MS4A13Q5J8X5 152 aa16.6■□□□□ 0.25
COL4A1-204ENST00000543140 C10orf120Q5SQS8 335 aa16.6■□□□□ 0.25
COL4A1-204ENST00000543140 MBLAC2Q68D91 279 aa16.6■□□□□ 0.25
COL4A1-204ENST00000543140 ZNF280DQ6N043 979 aa16.6■□□□□ 0.25
COL4A1-204ENST00000543140 TMEM173Q86WV6 379 aaPredicted RBP16.6■□□□□ 0.25
COL4A1-204ENST00000543140 MARCH5Q9NX47 278 aa16.6■□□□□ 0.25
COL4A1-204ENST00000543140 LRFN2Q9ULH4 789 aa16.6■□□□□ 0.25
COL4A1-204ENST00000543140 PLXNA3P51805 1871 aa16.6■□□□□ 0.25
COL4A1-204ENST00000543140 PROCP04070 461 aa16.6■□□□□ 0.25
COL4A1-204ENST00000543140 FGF3P11487 239 aaPredicted RBP16.6■□□□□ 0.25
COL4A1-204ENST00000543140 HTR7P34969 479 aa16.6■□□□□ 0.25
COL4A1-204ENST00000543140 CHRNA4P43681 627 aa16.6■□□□□ 0.25
COL4A1-204ENST00000543140 RTP2Q5QGT7 225 aa16.6■□□□□ 0.25
COL4A1-204ENST00000543140 RASIP1Q5U651 963 aa16.6■□□□□ 0.25
COL4A1-204ENST00000543140 RNF19BQ6ZMZ0 732 aa16.6■□□□□ 0.25
COL4A1-204ENST00000543140 ZNF354CQ86Y25 554 aa16.6■□□□□ 0.25
COL4A1-204ENST00000543140 TBC1D10AQ9BXI6 508 aa16.6■□□□□ 0.25
COL4A1-204ENST00000543140 FSD1LQ9BXM9 530 aa16.6■□□□□ 0.25
COL4A1-204ENST00000543140 A0A096LPK6 155 aa16.59■□□□□ 0.25
COL4A1-204ENST00000543140 J3KR12 359 aa16.59■□□□□ 0.25
COL4A1-204ENST00000543140 CHUKO15111 745 aa16.59■□□□□ 0.25
COL4A1-204ENST00000543140 PSMD3O43242 534 aa16.59■□□□□ 0.25
COL4A1-204ENST00000543140 SERPINB8P50452 374 aa16.59■□□□□ 0.25
COL4A1-204ENST00000543140 MRPL58Q14197 206 aaKnown RBP16.59■□□□□ 0.25
COL4A1-204ENST00000543140 E2F5Q15329 346 aa16.59■□□□□ 0.25
COL4A1-204ENST00000543140 STXBP5Q5T5C0 1151 aa16.59■□□□□ 0.25
COL4A1-204ENST00000543140 AFMIDQ63HM1 303 aa16.59■□□□□ 0.25
COL4A1-204ENST00000543140 DENND5AQ6IQ26 1287 aa16.59■□□□□ 0.25
COL4A1-204ENST00000543140 MSANTD2Q6P1R3 559 aa16.59■□□□□ 0.25
COL4A1-204ENST00000543140 TAS1R1Q7RTX1 841 aa16.59■□□□□ 0.25
COL4A1-204ENST00000543140 VPS39Q96JC1 886 aa16.59■□□□□ 0.25
COL4A1-204ENST00000543140 C1orf74Q96LT6 269 aa16.59■□□□□ 0.25
COL4A1-204ENST00000543140 KLHL5Q96PQ7 755 aa16.59■□□□□ 0.25
COL4A1-204ENST00000543140 KIFC1Q9BW19 673 aa16.59■□□□□ 0.25
COL4A1-204ENST00000543140 NMUR2Q9GZQ4 415 aa16.59■□□□□ 0.25
COL4A1-204ENST00000543140 THAP1Q9NVV9 213 aa16.59■□□□□ 0.25
COL4A1-204ENST00000543140 SLC39A10Q9ULF5 831 aa16.59■□□□□ 0.25
COL4A1-204ENST00000543140 HBS1LQ9Y450 684 aaKnown RBP16.59■□□□□ 0.25
COL4A1-204ENST00000543140 FCHO1O14526 889 aa16.59■□□□□ 0.25
COL4A1-204ENST00000543140 VAPBO95292 243 aa16.59■□□□□ 0.25
COL4A1-204ENST00000543140 HAPLN1P10915 354 aaPredicted RBP16.59■□□□□ 0.25
COL4A1-204ENST00000543140 SLC2A3P11169 496 aa16.59■□□□□ 0.25
COL4A1-204ENST00000543140 MAXP61244 160 aa16.59■□□□□ 0.25
COL4A1-204ENST00000543140 DUSP4Q13115 394 aa16.59■□□□□ 0.25
COL4A1-204ENST00000543140 RAP1GAP2Q684P5 730 aa16.59■□□□□ 0.25
COL4A1-204ENST00000543140 TIGD7Q6NT04 549 aaPredicted RBP16.59■□□□□ 0.25
COL4A1-204ENST00000543140 CIR1Q86X95 450 aaPredicted RBP16.59■□□□□ 0.25
COL4A1-204ENST00000543140 GIPC2Q8TF65 315 aa16.59■□□□□ 0.25
COL4A1-204ENST00000543140 HMCESQ96FZ2 354 aa16.59■□□□□ 0.25
COL4A1-204ENST00000543140 RAB3IPQ96QF0 476 aaPredicted RBP16.59■□□□□ 0.25
COL4A1-204ENST00000543140 SAR1AQ9NR31 198 aa16.59■□□□□ 0.25
COL4A1-204ENST00000543140 KCNK4Q9NYG8 393 aa16.59■□□□□ 0.25
COL4A1-204ENST00000543140 MARCH2Q9P0N8 246 aa16.59■□□□□ 0.25
COL4A1-204ENST00000543140 SLC2A6Q9UGQ3 507 aa16.59■□□□□ 0.25
COL4A1-204ENST00000543140 SCN5AQ14524 2016 aa16.58■□□□□ 0.25
COL4A1-204ENST00000543140 TTC24A2A3L6 582 aaPredicted RBP16.58■□□□□ 0.25
COL4A1-204ENST00000543140 MTMR11A4FU01 709 aa16.58■□□□□ 0.25
COL4A1-204ENST00000543140 VNN2O95498 520 aa16.58■□□□□ 0.25
COL4A1-204ENST00000543140 MAGEA11P43364 429 aa16.58■□□□□ 0.25
COL4A1-204ENST00000543140 SLC1A6P48664 564 aa16.58■□□□□ 0.25
COL4A1-204ENST00000543140 ITKQ08881 620 aa16.58■□□□□ 0.25
COL4A1-204ENST00000543140 RIPK1Q13546 671 aa16.58■□□□□ 0.25
COL4A1-204ENST00000543140 PCID2Q5JVF3 399 aa16.58■□□□□ 0.25
COL4A1-204ENST00000543140 ESRP1Q6NXG1 681 aaKnown RBP16.58■□□□□ 0.25
COL4A1-204ENST00000543140 FUT10Q6P4F1 479 aa16.58■□□□□ 0.25
COL4A1-204ENST00000543140 PKN3Q6P5Z2 889 aa16.58■□□□□ 0.25
COL4A1-204ENST00000543140 PRSS55Q6UWB4 352 aaPredicted RBP16.58■□□□□ 0.25
COL4A1-204ENST00000543140 LONP2Q86WA8 852 aa16.58■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms