RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 PECAM1P16284 738 aaPredicted RBP17.47■□□□□ 0.39
LIG1-204ENST00000542460 TCP1P17987 556 aaKnown RBP17.47■□□□□ 0.39
LIG1-204ENST00000542460 AOC1P19801 751 aa17.47■□□□□ 0.39
LIG1-204ENST00000542460 CASQ1P31415 396 aa17.47■□□□□ 0.39
LIG1-204ENST00000542460 FNDC3BQ53EP0 1204 aaKnown RBP17.47■□□□□ 0.39
LIG1-204ENST00000542460 SDE2Q6IQ49 451 aa17.47■□□□□ 0.39
LIG1-204ENST00000542460 LINGO4Q6UY18 593 aa17.47■□□□□ 0.39
LIG1-204ENST00000542460 SYT10Q6XYQ8 523 aa17.47■□□□□ 0.39
LIG1-204ENST00000542460 ARHGAP36Q6ZRI8 547 aa17.47■□□□□ 0.39
LIG1-204ENST00000542460 BMP8AQ7Z5Y6 402 aa17.47■□□□□ 0.39
LIG1-204ENST00000542460 METTL3Q86U44 580 aaKnown RBP17.47■□□□□ 0.39
LIG1-204ENST00000542460 CCDC33Q8N5R6 958 aa17.47■□□□□ 0.39
LIG1-204ENST00000542460 ALLCQ8N6M5 410 aa17.47■□□□□ 0.39
LIG1-204ENST00000542460 IL17RCQ8NAC3 791 aa17.47■□□□□ 0.39
LIG1-204ENST00000542460 ATP11CQ8NB49 1132 aa17.47■□□□□ 0.39
LIG1-204ENST00000542460 TTC13Q8NBP0 860 aa17.47■□□□□ 0.39
LIG1-204ENST00000542460 CCNYQ8ND76 341 aa17.47■□□□□ 0.39
LIG1-204ENST00000542460 RPLP0P6Q8NHW5 317 aa17.47■□□□□ 0.39
LIG1-204ENST00000542460 HAUS1Q96CS2 278 aa17.47■□□□□ 0.39
LIG1-204ENST00000542460 OLFM3Q96PB7 478 aa17.47■□□□□ 0.39
LIG1-204ENST00000542460 TSGA13Q96PP4 275 aa17.47■□□□□ 0.39
LIG1-204ENST00000542460 ACOX2Q99424 681 aa17.47■□□□□ 0.39
LIG1-204ENST00000542460 BRD8Q9H0E9 1235 aa17.47■□□□□ 0.39
LIG1-204ENST00000542460 SLCO3A1Q9UIG8 710 aa17.47■□□□□ 0.39
LIG1-204ENST00000542460 SLC8A2Q9UPR5 921 aa17.47■□□□□ 0.39
LIG1-204ENST00000542460 CHURC1-FNTBB4DL54 471 aa17.47■□□□□ 0.39
LIG1-204ENST00000542460 PPP1R12AO14974 1030 aaPredicted RBP17.47■□□□□ 0.39
LIG1-204ENST00000542460 ATG13O75143 517 aa17.47■□□□□ 0.39
LIG1-204ENST00000542460 MT-CO1P00395 513 aa17.47■□□□□ 0.39
LIG1-204ENST00000542460 FGGP02679 453 aa17.47■□□□□ 0.39
LIG1-204ENST00000542460 CCNCP24863 283 aa17.47■□□□□ 0.39
LIG1-204ENST00000542460 NTSR1P30989 418 aa17.47■□□□□ 0.39
LIG1-204ENST00000542460 MAGEA9P43362 315 aa17.47■□□□□ 0.39
LIG1-204ENST00000542460 STK19P49842 368 aaPredicted RBP17.47■□□□□ 0.39
LIG1-204ENST00000542460 CLCN6P51797 869 aa17.47■□□□□ 0.39
LIG1-204ENST00000542460 ENPP2Q13822 863 aa17.47■□□□□ 0.39
LIG1-204ENST00000542460 INO80DQ53TQ3 878 aaPredicted RBP17.47■□□□□ 0.39
LIG1-204ENST00000542460 SERPINA13PQ6UXR4 307 aa17.47■□□□□ 0.39
LIG1-204ENST00000542460 Q6ZS52 159 aa17.47■□□□□ 0.39
LIG1-204ENST00000542460 RASGEF1CQ8N431 466 aa17.47■□□□□ 0.39
LIG1-204ENST00000542460 SH2D3CQ8N5H7 860 aa17.47■□□□□ 0.39
LIG1-204ENST00000542460 MAIP1Q8WWC4 291 aa17.47■□□□□ 0.39
LIG1-204ENST00000542460 CASKIN2Q8WXE0 1202 aa17.47■□□□□ 0.39
LIG1-204ENST00000542460 HDAC11Q96DB2 347 aa17.47■□□□□ 0.39
LIG1-204ENST00000542460 MYO19Q96H55 970 aa17.47■□□□□ 0.39
LIG1-204ENST00000542460 ZNF599Q96NL3 588 aa17.47■□□□□ 0.39
LIG1-204ENST00000542460 CHRDQ9H2X0 955 aa17.47■□□□□ 0.39
LIG1-204ENST00000542460 TMEM245Q9H330 911 aa17.47■□□□□ 0.39
LIG1-204ENST00000542460 PDFQ9HBH1 243 aa17.47■□□□□ 0.39
LIG1-204ENST00000542460 ZDHHC4Q9NPG8 344 aa17.47■□□□□ 0.39
LIG1-204ENST00000542460 CACNA2D2Q9NY47 1150 aa17.47■□□□□ 0.39
LIG1-204ENST00000542460 TTC7AQ9ULT0 858 aaPredicted RBP17.47■□□□□ 0.39
LIG1-204ENST00000542460 SAR1BQ9Y6B6 198 aa17.47■□□□□ 0.39
LIG1-204ENST00000542460 STON1Q9Y6Q2 735 aa17.47■□□□□ 0.39
LIG1-204ENST00000542460 MIA3Q5JRA6 1907 aa17.46■□□□□ 0.39
LIG1-204ENST00000542460 TCRBV7S2A1N4TA0A589 114 aa17.46■□□□□ 0.39
LIG1-204ENST00000542460 KIF2AO00139 706 aaPredicted RBP17.46■□□□□ 0.39
LIG1-204ENST00000542460 FANCGO15287 622 aa17.46■□□□□ 0.39
LIG1-204ENST00000542460 PI15O43692 258 aa17.46■□□□□ 0.39
LIG1-204ENST00000542460 ATP9BO43861 1147 aa17.46■□□□□ 0.39
LIG1-204ENST00000542460 KLF8O95600 359 aaPredicted RBP17.46■□□□□ 0.39
LIG1-204ENST00000542460 CD160O95971 181 aa17.46■□□□□ 0.39
LIG1-204ENST00000542460 DCNP07585 359 aaKnown RBP17.46■□□□□ 0.39
LIG1-204ENST00000542460 SRCP12931 536 aa17.46■□□□□ 0.39
LIG1-204ENST00000542460 IL12RB1P42701 662 aa17.46■□□□□ 0.39
LIG1-204ENST00000542460 SERPINH1P50454 418 aaKnown RBP17.46■□□□□ 0.39
LIG1-204ENST00000542460 OTUD4Q01804 1114 aaKnown RBP17.46■□□□□ 0.39
LIG1-204ENST00000542460 ZNF33AQ06730 810 aa17.46■□□□□ 0.39
LIG1-204ENST00000542460 PPIDQ08752 370 aaKnown RBP17.46■□□□□ 0.39
LIG1-204ENST00000542460 NOMO1Q15155 1222 aa17.46■□□□□ 0.39
LIG1-204ENST00000542460 TIGD7Q6NT04 549 aaPredicted RBP17.46■□□□□ 0.39
LIG1-204ENST00000542460 LEKR1Q6ZMV7 388 aa17.46■□□□□ 0.39
LIG1-204ENST00000542460 TXNDC5Q8NBS9 432 aaKnown RBP17.46■□□□□ 0.39
LIG1-204ENST00000542460 ACTL9Q8TC94 416 aa17.46■□□□□ 0.39
LIG1-204ENST00000542460 COG1Q8WTW3 980 aa17.46■□□□□ 0.39
LIG1-204ENST00000542460 FATE1Q969F0 183 aa17.46■□□□□ 0.39
LIG1-204ENST00000542460 GABRG3Q99928 467 aa17.46■□□□□ 0.39
LIG1-204ENST00000542460 IER2Q9BTL4 223 aa17.46■□□□□ 0.39
LIG1-204ENST00000542460 UBA2Q9UBT2 640 aaPredicted RBP17.46■□□□□ 0.39
LIG1-204ENST00000542460 TECTAO75443 2155 aa17.45■□□□□ 0.38
LIG1-204ENST00000542460 WASH3PC4AMC7 463 aa17.45■□□□□ 0.38
LIG1-204ENST00000542460 XRCC4Q13426 336 aa17.45■□□□□ 0.38
LIG1-204ENST00000542460 RFTN1Q14699 578 aaPredicted RBP17.45■□□□□ 0.38
LIG1-204ENST00000542460 DLG2Q15700 870 aa17.45■□□□□ 0.38
LIG1-204ENST00000542460 LONRF2Q1L5Z9 754 aa17.45■□□□□ 0.38
LIG1-204ENST00000542460 ACCSLQ4AC99 568 aa17.45■□□□□ 0.38
LIG1-204ENST00000542460 EOGTQ5NDL2 527 aa17.45■□□□□ 0.38
LIG1-204ENST00000542460 NSMCE1Q8WV22 266 aa17.45■□□□□ 0.38
LIG1-204ENST00000542460 NAP1L3Q99457 506 aaPredicted RBP17.45■□□□□ 0.38
LIG1-204ENST00000542460 LGMNQ99538 433 aa17.45■□□□□ 0.38
LIG1-204ENST00000542460 CEP44Q9C0F1 390 aa17.45■□□□□ 0.38
LIG1-204ENST00000542460 DLGAP2Q9P1A6 1054 aa17.45■□□□□ 0.38
LIG1-204ENST00000542460 SUN2Q9UH99 717 aa17.45■□□□□ 0.38
LIG1-204ENST00000542460 MMP17Q9ULZ9 603 aa17.45■□□□□ 0.38
LIG1-204ENST00000542460 ACTL7AQ9Y615 435 aa17.45■□□□□ 0.38
LIG1-204ENST00000542460 TTC34A8MYJ7 566 aa17.44■□□□□ 0.38
LIG1-204ENST00000542460 HACD1B0YJ81 288 aa17.44■□□□□ 0.38
LIG1-204ENST00000542460 K7ERQ8 282 aa17.44■□□□□ 0.38
LIG1-204ENST00000542460 SGK1O00141 431 aa17.44■□□□□ 0.38
LIG1-204ENST00000542460 MATN3O15232 486 aa17.44■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms