RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 PKN3Q6P5Z2 889 aa10.05□□□□□ -0.8
SS18-205ENST00000542420 LRRTM3Q86VH5 581 aa10.05□□□□□ -0.8
SS18-205ENST00000542420 TMPRSS6Q8IU80 811 aa10.05□□□□□ -0.8
SS18-205ENST00000542420 COLGALT2Q8IYK4 626 aa10.05□□□□□ -0.8
SS18-205ENST00000542420 NUP93Q8N1F7 819 aa10.05□□□□□ -0.8
SS18-205ENST00000542420 PPP1R14CQ8TAE6 165 aa10.05□□□□□ -0.8
SS18-205ENST00000542420 SPDL1Q96EA4 605 aa10.05□□□□□ -0.8
SS18-205ENST00000542420 FCRL3Q96P31 734 aaPredicted RBP10.05□□□□□ -0.8
SS18-205ENST00000542420 TBL1YQ9BQ87 522 aa10.05□□□□□ -0.8
SS18-205ENST00000542420 PAAF1Q9BRP4 392 aa10.05□□□□□ -0.8
SS18-205ENST00000542420 RNPEPL1Q9HAU8 725 aa10.05□□□□□ -0.8
SS18-205ENST00000542420 BATF3Q9NR55 127 aa10.05□□□□□ -0.8
SS18-205ENST00000542420 SNX15Q9NRS6 342 aa10.05□□□□□ -0.8
SS18-205ENST00000542420 IRAK4Q9NWZ3 460 aa10.05□□□□□ -0.8
SS18-205ENST00000542420 NOD1Q9Y239 953 aa10.05□□□□□ -0.8
SS18-205ENST00000542420 SLC22A2O15244 555 aa10.04□□□□□ -0.8
SS18-205ENST00000542420 MAFKO60675 156 aa10.04□□□□□ -0.8
SS18-205ENST00000542420 PAGE1O75459 146 aa10.04□□□□□ -0.8
SS18-205ENST00000542420 PAPSS2O95340 614 aaPredicted RBP10.04□□□□□ -0.8
SS18-205ENST00000542420 ESRRAP11474 423 aaPredicted RBP10.04□□□□□ -0.8
SS18-205ENST00000542420 RHOQP17081 205 aa10.04□□□□□ -0.8
SS18-205ENST00000542420 AOC1P19801 751 aa10.04□□□□□ -0.8
SS18-205ENST00000542420 IGFBP6P24592 240 aaPredicted RBP10.04□□□□□ -0.8
SS18-205ENST00000542420 ADRA1AP35348 466 aa10.04□□□□□ -0.8
SS18-205ENST00000542420 SERPINB5P36952 375 aa10.04□□□□□ -0.8
SS18-205ENST00000542420 KPNA2P52292 529 aaKnown RBP10.04□□□□□ -0.8
SS18-205ENST00000542420 KPNA1P52294 538 aaPredicted RBP10.04□□□□□ -0.8
SS18-205ENST00000542420 MLLT6P55198 1093 aaPredicted RBP10.04□□□□□ -0.8
SS18-205ENST00000542420 SF3A3Q12874 501 aaKnown RBP eCLIP10.04□□□□□ -0.84e-6■■■■□ 22.2
SS18-205ENST00000542420 LAMB3Q13751 1172 aa10.04□□□□□ -0.8
SS18-205ENST00000542420 MRPL58Q14197 206 aaKnown RBP10.04□□□□□ -0.8
SS18-205ENST00000542420 RBBP5Q15291 538 aaKnown RBP10.04□□□□□ -0.8
SS18-205ENST00000542420 ARTNQ5T4W7 220 aa10.04□□□□□ -0.8
SS18-205ENST00000542420 METTL21CQ5VZV1 264 aa10.04□□□□□ -0.8
SS18-205ENST00000542420 KIAA0930Q6ICG6 404 aaPredicted RBP10.04□□□□□ -0.8
SS18-205ENST00000542420 TRAF7Q6Q0C0 670 aa10.04□□□□□ -0.8
SS18-205ENST00000542420 STRA8Q7Z7C7 330 aa10.04□□□□□ -0.8
SS18-205ENST00000542420 LONP2Q86WA8 852 aa10.04□□□□□ -0.8
SS18-205ENST00000542420 KIF2BQ8N4N8 673 aa10.04□□□□□ -0.8
SS18-205ENST00000542420 DCLK2Q8N568 766 aa10.04□□□□□ -0.8
SS18-205ENST00000542420 DRAXINQ8NBI3 349 aaPredicted RBP10.04□□□□□ -0.8
SS18-205ENST00000542420 FAM13CQ8NE31 585 aa10.04□□□□□ -0.8
SS18-205ENST00000542420 PPHLN1Q8NEY8 458 aaKnown RBP10.04□□□□□ -0.8
SS18-205ENST00000542420 SPDYE1Q8NFV5 336 aaPredicted RBP10.04□□□□□ -0.8
SS18-205ENST00000542420 ADAM32Q8TC27 787 aa10.04□□□□□ -0.8
SS18-205ENST00000542420 PXYLP1Q8TE99 480 aa10.04□□□□□ -0.8
SS18-205ENST00000542420 AGAP11Q8TF27 550 aa10.04□□□□□ -0.8
SS18-205ENST00000542420 EDEM1Q92611 657 aa10.04□□□□□ -0.8
SS18-205ENST00000542420 PEX13Q92968 403 aa10.04□□□□□ -0.8
SS18-205ENST00000542420 UBE2OQ9C0C9 1292 aaKnown RBP10.04□□□□□ -0.8
SS18-205ENST00000542420 MRGBPQ9NV56 204 aa10.04□□□□□ -0.8
SS18-205ENST00000542420 TAGLN3Q9UI15 199 aa10.04□□□□□ -0.8
SS18-205ENST00000542420 PCDHB12Q9Y5F1 795 aa10.04□□□□□ -0.8
SS18-205ENST00000542420 CDY1Q9Y6F8 540 aa10.04□□□□□ -0.8
SS18-205ENST00000542420 TANC1Q9C0D5 1861 aa10.04□□□□□ -0.8
SS18-205ENST00000542420 IGLV3-10A0A075B6K4 115 aa10.04□□□□□ -0.8
SS18-205ENST00000542420 F8W8V4 182 aa10.04□□□□□ -0.8
SS18-205ENST00000542420 COQ9O75208 318 aa10.04□□□□□ -0.8
SS18-205ENST00000542420 SMNDC1O75940 238 aaKnown RBP eCLIP10.04□□□□□ -0.8
SS18-205ENST00000542420 JCHAINP01591 159 aa10.04□□□□□ -0.8
SS18-205ENST00000542420 GRIK1P39086 918 aa10.04□□□□□ -0.8
SS18-205ENST00000542420 SLC1A6P48664 564 aa10.04□□□□□ -0.8
SS18-205ENST00000542420 ACLYP53396 1101 aa10.04□□□□□ -0.8
SS18-205ENST00000542420 PRKCZQ05513 592 aa10.04□□□□□ -0.8
SS18-205ENST00000542420 ELAVL2Q12926 359 aaKnown RBP10.04□□□□□ -0.8
SS18-205ENST00000542420 HNRNPDQ14103 355 aaKnown RBP10.04□□□□□ -0.8
SS18-205ENST00000542420 TSNAXIP1Q2TAA8 658 aa10.04□□□□□ -0.8
SS18-205ENST00000542420 SCD5Q86SK9 330 aa10.04□□□□□ -0.8
SS18-205ENST00000542420 ARID3BQ8IVW6 561 aaPredicted RBP10.04□□□□□ -0.8
SS18-205ENST00000542420 ATP6V0D2Q8N8Y2 350 aa10.04□□□□□ -0.8
SS18-205ENST00000542420 LRRN4Q8WUT4 740 aa10.04□□□□□ -0.8
SS18-205ENST00000542420 SPATA17Q96L03 361 aa10.04□□□□□ -0.8
SS18-205ENST00000542420 TSNARE1Q96NA8 513 aa10.04□□□□□ -0.8
SS18-205ENST00000542420 CDK5RAP1Q96SZ6 601 aaKnown RBP10.04□□□□□ -0.8
SS18-205ENST00000542420 FAM167BQ9BTA0 163 aa10.04□□□□□ -0.8
SS18-205ENST00000542420 C12orf65Q9H3J6 166 aaKnown RBP10.04□□□□□ -0.8
SS18-205ENST00000542420 DCLRE1BQ9H816 532 aa10.04□□□□□ -0.8
SS18-205ENST00000542420 NMRK2Q9NPI5 230 aa10.04□□□□□ -0.8
SS18-205ENST00000542420 TMEM248Q9NWD8 314 aa10.04□□□□□ -0.8
SS18-205ENST00000542420 TMEM161AQ9NX61 479 aa10.04□□□□□ -0.8
SS18-205ENST00000542420 PCDHB5Q9Y5E4 795 aa10.04□□□□□ -0.8
SS18-205ENST00000542420 SLCO1B7G3V0H7 640 aa10.03□□□□□ -0.8
SS18-205ENST00000542420 GSC2O15499 205 aa10.03□□□□□ -0.8
SS18-205ENST00000542420 CBX6O95503 412 aa10.03□□□□□ -0.8
SS18-205ENST00000542420 PRKCGP05129 697 aa10.03□□□□□ -0.8
SS18-205ENST00000542420 RPSAP08865 295 aaKnown RBP10.03□□□□□ -0.8
SS18-205ENST00000542420 ERVK-10P10266 1014 aa10.03□□□□□ -0.8
SS18-205ENST00000542420 RALBP11234 206 aa10.03□□□□□ -0.8
SS18-205ENST00000542420 CKBP12277 381 aa10.03□□□□□ -0.8
SS18-205ENST00000542420 PRKAR2AP13861 404 aaKnown RBP10.03□□□□□ -0.8
SS18-205ENST00000542420 CPA3P15088 417 aa10.03□□□□□ -0.8
SS18-205ENST00000542420 ABCE1P61221 599 aaKnown RBP10.03□□□□□ -0.8
SS18-205ENST00000542420 RING1Q06587 406 aa10.03□□□□□ -0.8
SS18-205ENST00000542420 FSTL4Q6MZW2 842 aa10.03□□□□□ -0.8
SS18-205ENST00000542420 CNTD1Q8N815 330 aa10.03□□□□□ -0.8
SS18-205ENST00000542420 CALML6Q8TD86 181 aa10.03□□□□□ -0.8
SS18-205ENST00000542420 SCG3Q8WXD2 468 aaKnown RBP10.03□□□□□ -0.8
SS18-205ENST00000542420 CCDC106Q9BWC9 280 aa10.03□□□□□ -0.8
SS18-205ENST00000542420 SLC25A51Q9H1U9 297 aa10.03□□□□□ -0.8
SS18-205ENST00000542420 TRPC7Q9HCX4 862 aa10.03□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms