RNA–Protein interactions for RNA: ENST00000542407.5

PDLIM5-221, Transcript of PDZ and LIM domain 5, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene PDLIM5, Length 2,979 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-221ENST00000542407 HTTP42858 3142 aa8.15□□□□□ -1.1
PDLIM5-221ENST00000542407 SMIM28A0A1B0GU29 152 aa8.15□□□□□ -1.11
PDLIM5-221ENST00000542407 F8VP50 259 aa8.15□□□□□ -1.11
PDLIM5-221ENST00000542407 SNPHO15079 494 aa8.15□□□□□ -1.11
PDLIM5-221ENST00000542407 HMGCRP04035 888 aa8.15□□□□□ -1.11
PDLIM5-221ENST00000542407 ENO1P06733 434 aaKnown RBP8.15□□□□□ -1.11
PDLIM5-221ENST00000542407 FGFR1P11362 822 aa8.15□□□□□ -1.11
PDLIM5-221ENST00000542407 SFTPCP11686 197 aa8.15□□□□□ -1.11
PDLIM5-221ENST00000542407 ATF2P15336 505 aa8.15□□□□□ -1.11
PDLIM5-221ENST00000542407 CD19P15391 556 aa8.15□□□□□ -1.11
PDLIM5-221ENST00000542407 POLR2GP62487 172 aaKnown RBP eCLIP8.15□□□□□ -1.11
PDLIM5-221ENST00000542407 MRPS6P82932 125 aaKnown RBP8.15□□□□□ -1.11
PDLIM5-221ENST00000542407 LMNB2Q03252 620 aa8.15□□□□□ -1.11
PDLIM5-221ENST00000542407 KDSRQ06136 332 aa8.15□□□□□ -1.11
PDLIM5-221ENST00000542407 ANO4Q32M45 955 aa8.15□□□□□ -1.11
PDLIM5-221ENST00000542407 MFSD14CQ5VZR4 134 aa8.15□□□□□ -1.11
PDLIM5-221ENST00000542407 TAF2Q6P1X5 1199 aa8.15□□□□□ -1.11
PDLIM5-221ENST00000542407 LCLAT1Q6UWP7 414 aa8.15□□□□□ -1.11
PDLIM5-221ENST00000542407 CXCL17Q6UXB2 119 aa8.15□□□□□ -1.11
PDLIM5-221ENST00000542407 LRRC6Q86X45 466 aa8.15□□□□□ -1.11
PDLIM5-221ENST00000542407 TREML1Q86YW5 311 aa8.15□□□□□ -1.11
PDLIM5-221ENST00000542407 RHOT1Q8IXI2 618 aa8.15□□□□□ -1.11
PDLIM5-221ENST00000542407 PYDC1Q8WXC3 89 aa8.15□□□□□ -1.11
PDLIM5-221ENST00000542407 SLCO2A1Q92959 643 aa8.15□□□□□ -1.11
PDLIM5-221ENST00000542407 PGBD4Q96DM1 585 aa8.15□□□□□ -1.11
PDLIM5-221ENST00000542407 PTCD3Q96EY7 689 aaKnown RBP8.15□□□□□ -1.11
PDLIM5-221ENST00000542407 LPIN3Q9BQK8 851 aa8.15□□□□□ -1.11
PDLIM5-221ENST00000542407 SHCBP1LQ9BZQ2 653 aa8.15□□□□□ -1.11
PDLIM5-221ENST00000542407 SENP6Q9GZR1 1112 aaPredicted RBP8.15□□□□□ -1.11
PDLIM5-221ENST00000542407 NEK6Q9HC98 313 aa8.15□□□□□ -1.11
PDLIM5-221ENST00000542407 GMIPQ9P107 970 aa8.15□□□□□ -1.11
PDLIM5-221ENST00000542407 LAMP5Q9UJQ1 280 aa8.15□□□□□ -1.11
PDLIM5-221ENST00000542407 EDARQ9UNE0 448 aa8.15□□□□□ -1.11
PDLIM5-221ENST00000542407 FAF1Q9UNN5 650 aaPredicted RBP8.15□□□□□ -1.11
PDLIM5-221ENST00000542407 SMIM31A0A1B0GVY4 71 aa8.14□□□□□ -1.11
PDLIM5-221ENST00000542407 SNTNA6NMZ2 147 aa8.14□□□□□ -1.11
PDLIM5-221ENST00000542407 GOLGA8RI6L899 631 aa8.14□□□□□ -1.11
PDLIM5-221ENST00000542407 FBP2O00757 339 aa8.14□□□□□ -1.11
PDLIM5-221ENST00000542407 PIAS1O75925 651 aa8.14□□□□□ -1.11
PDLIM5-221ENST00000542407 PDE5AO76074 875 aa8.14□□□□□ -1.11
PDLIM5-221ENST00000542407 CCND3P30281 292 aaPredicted RBP8.14□□□□□ -1.11
PDLIM5-221ENST00000542407 HMOX2P30519 316 aa8.14□□□□□ -1.11
PDLIM5-221ENST00000542407 CCR3P51677 355 aa8.14□□□□□ -1.11
PDLIM5-221ENST00000542407 ARHGDIBP52566 201 aa8.14□□□□□ -1.11
PDLIM5-221ENST00000542407 TAP1Q03518 808 aa8.14□□□□□ -1.11
PDLIM5-221ENST00000542407 FAPQ12884 760 aa8.14□□□□□ -1.11
PDLIM5-221ENST00000542407 DLG1Q12959 904 aa8.14□□□□□ -1.11
PDLIM5-221ENST00000542407 DCTN2Q13561 401 aaKnown RBP8.14□□□□□ -1.11
PDLIM5-221ENST00000542407 SOWAHAQ2M3V2 549 aa8.14□□□□□ -1.11
PDLIM5-221ENST00000542407 KCTD21Q4G0X4 260 aa8.14□□□□□ -1.11
PDLIM5-221ENST00000542407 GNASQ5JWF2 1037 aa8.14□□□□□ -1.11
PDLIM5-221ENST00000542407 LRRC38Q5VT99 294 aa8.14□□□□□ -1.11
PDLIM5-221ENST00000542407 TXNRD3NBQ6F5E7 133 aa8.14□□□□□ -1.11
PDLIM5-221ENST00000542407 SERINC5Q86VE9 423 aa8.14□□□□□ -1.11
PDLIM5-221ENST00000542407 KLHDC9Q8NEP7 349 aa8.14□□□□□ -1.11
PDLIM5-221ENST00000542407 BEST2Q8NFU1 509 aa8.14□□□□□ -1.11
PDLIM5-221ENST00000542407 OR6Y1Q8NGX8 325 aa8.14□□□□□ -1.11
PDLIM5-221ENST00000542407 FBXO27Q8NI29 283 aa8.14□□□□□ -1.11
PDLIM5-221ENST00000542407 JOSD2Q8TAC2 188 aa8.14□□□□□ -1.11
PDLIM5-221ENST00000542407 GADD45GIP1Q8TAE8 222 aaPredicted RBP8.14□□□□□ -1.11
PDLIM5-221ENST00000542407 KBTBD7Q8WVZ9 684 aa8.14□□□□□ -1.11
PDLIM5-221ENST00000542407 MCRS1Q96EZ8 462 aa8.14□□□□□ -1.11
PDLIM5-221ENST00000542407 CCDC28BQ9BUN5 200 aa8.14□□□□□ -1.11
PDLIM5-221ENST00000542407 TRIM55Q9BYV6 548 aa8.14□□□□□ -1.11
PDLIM5-221ENST00000542407 ATP13A3Q9H7F0 1226 aa8.14□□□□□ -1.11
PDLIM5-221ENST00000542407 FANCEQ9HB96 536 aa8.14□□□□□ -1.11
PDLIM5-221ENST00000542407 STRIP2Q9ULQ0 834 aa8.14□□□□□ -1.11
PDLIM5-221ENST00000542407 UBQLN1Q9UMX0 589 aaKnown RBP8.14□□□□□ -1.11
PDLIM5-221ENST00000542407 A0A1W2PPM1 405 aa8.14□□□□□ -1.11
PDLIM5-221ENST00000542407 M0QYV0 167 aa8.14□□□□□ -1.11
PDLIM5-221ENST00000542407 PTGESO14684 152 aa8.14□□□□□ -1.11
PDLIM5-221ENST00000542407 TP73O15350 636 aa8.14□□□□□ -1.11
PDLIM5-221ENST00000542407 DNAJC6O75061 913 aa8.14□□□□□ -1.11
PDLIM5-221ENST00000542407 AOC2O75106 756 aa8.14□□□□□ -1.11
PDLIM5-221ENST00000542407 ALDH1A1P00352 501 aa8.14□□□□□ -1.11
PDLIM5-221ENST00000542407 CHRNA1P02708 482 aa8.14□□□□□ -1.11
PDLIM5-221ENST00000542407 FYNP06241 537 aa8.14□□□□□ -1.11
PDLIM5-221ENST00000542407 ENO2P09104 434 aaPredicted RBP8.14□□□□□ -1.11
PDLIM5-221ENST00000542407 PTPN2P17706 415 aa8.14□□□□□ -1.11
PDLIM5-221ENST00000542407 ITIH2P19823 946 aa8.14□□□□□ -1.11
PDLIM5-221ENST00000542407 ADRA1DP25100 572 aa8.14□□□□□ -1.11
PDLIM5-221ENST00000542407 RFC1P35251 1148 aaPredicted RBP8.14□□□□□ -1.11
PDLIM5-221ENST00000542407 SLC25A11Q02978 314 aaKnown RBP8.14□□□□□ -1.11
PDLIM5-221ENST00000542407 STILQ15468 1287 aa8.14□□□□□ -1.11
PDLIM5-221ENST00000542407 ATP13A4Q4VNC1 1196 aa8.14□□□□□ -1.11
PDLIM5-221ENST00000542407 HABP4Q5JVS0 413 aaKnown RBP8.14□□□□□ -1.11
PDLIM5-221ENST00000542407 TTC23LQ6PF05 361 aa8.14□□□□□ -1.11
PDLIM5-221ENST00000542407 KLHDC10Q6PID8 442 aa8.14□□□□□ -1.11
PDLIM5-221ENST00000542407 RGS9BPQ6ZS82 235 aa8.14□□□□□ -1.11
PDLIM5-221ENST00000542407 ACAD11Q709F0 780 aa8.14□□□□□ -1.11
PDLIM5-221ENST00000542407 TRABD2AQ86V40 505 aa8.14□□□□□ -1.11
PDLIM5-221ENST00000542407 EXD1Q8NHP7 514 aa8.14□□□□□ -1.11
PDLIM5-221ENST00000542407 COG8Q96MW5 612 aa8.14□□□□□ -1.11
PDLIM5-221ENST00000542407 KLF6Q99612 283 aaPredicted RBP8.14□□□□□ -1.11
PDLIM5-221ENST00000542407 TUBB6Q9BUF5 446 aa8.14□□□□□ -1.11
PDLIM5-221ENST00000542407 NT5C1AQ9BXI3 368 aa8.14□□□□□ -1.11
PDLIM5-221ENST00000542407 GRIP2Q9C0E4 1043 aa8.14□□□□□ -1.11
PDLIM5-221ENST00000542407 VPS37BQ9H9H4 285 aa8.14□□□□□ -1.11
PDLIM5-221ENST00000542407 CHST7Q9NS84 486 aa8.14□□□□□ -1.11
PDLIM5-221ENST00000542407 PTTG2Q9NZH5 202 aa8.14□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 202.2 ms