RNA–Protein interactions for RNA: ENST00000541005.1

LTBR-208, Transcript of lymphotoxin beta receptor, humanhuman

TSL 2

Gene LTBR, Length 583 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LTBR-208ENST00000541005 TPI1P60174 286 aa13.4□□□□□ -0.26
LTBR-208ENST00000541005 SF3A2Q15428 464 aaKnown RBP13.4□□□□□ -0.26
LTBR-208ENST00000541005 CCDC6Q16204 474 aa13.4□□□□□ -0.26
LTBR-208ENST00000541005 C22orf39Q6P5X5 142 aa13.4□□□□□ -0.26
LTBR-208ENST00000541005 Q6ZVU0 165 aa13.4□□□□□ -0.26
LTBR-208ENST00000541005 DSG4Q86SJ6 1040 aa13.4□□□□□ -0.26
LTBR-208ENST00000541005 MMAAQ8IVH4 418 aaKnown RBP13.4□□□□□ -0.26
LTBR-208ENST00000541005 UMODL1-AS1Q8N2C9 162 aa13.4□□□□□ -0.26
LTBR-208ENST00000541005 NETO1Q8TDF5 533 aa13.4□□□□□ -0.26
LTBR-208ENST00000541005 DNASE2BQ8WZ79 361 aa13.4□□□□□ -0.26
LTBR-208ENST00000541005 PIGKQ92643 395 aa13.4□□□□□ -0.26
LTBR-208ENST00000541005 ARHGEF26Q96DR7 871 aa13.4□□□□□ -0.26
LTBR-208ENST00000541005 MRFAP1L1Q96HT8 127 aa13.4□□□□□ -0.26
LTBR-208ENST00000541005 GPR174Q9BXC1 333 aa13.4□□□□□ -0.26
LTBR-208ENST00000541005 TMEM74BQ9NUR3 256 aa13.4□□□□□ -0.26
LTBR-208ENST00000541005 DLL3Q9NYJ7 618 aa13.4□□□□□ -0.26
LTBR-208ENST00000541005 DONSONQ9NYP3 566 aa13.4□□□□□ -0.26
LTBR-208ENST00000541005 UVRAGQ9P2Y5 699 aa13.4□□□□□ -0.26
LTBR-208ENST00000541005 IP6K2Q9UHH9 426 aa13.4□□□□□ -0.26
LTBR-208ENST00000541005 DNAI1Q9UI46 699 aa13.4□□□□□ -0.26
LTBR-208ENST00000541005 ANAPC7Q9UJX3 599 aa13.4□□□□□ -0.26
LTBR-208ENST00000541005 LRRK1Q38SD2 2015 aa13.39□□□□□ -0.27
LTBR-208ENST00000541005 LNP1A1A4G5 178 aa13.39□□□□□ -0.27
LTBR-208ENST00000541005 ZSCAN5CA6NGD5 496 aaPredicted RBP13.39□□□□□ -0.27
LTBR-208ENST00000541005 METTL12A8MUP2 240 aa13.39□□□□□ -0.27
LTBR-208ENST00000541005 AKR1B15C9JRZ8 316 aaPredicted RBP13.39□□□□□ -0.27
LTBR-208ENST00000541005 K7ERQ8 282 aa13.39□□□□□ -0.27
LTBR-208ENST00000541005 KHNYNO15037 678 aaKnown RBP13.39□□□□□ -0.27
LTBR-208ENST00000541005 SMAD6O43541 496 aaKnown RBP13.39□□□□□ -0.27
LTBR-208ENST00000541005 CREB3O43889 395 aa13.39□□□□□ -0.27
LTBR-208ENST00000541005 ZNF821O75541 412 aaPredicted RBP13.39□□□□□ -0.27
LTBR-208ENST00000541005 SEMA4FO95754 770 aa13.39□□□□□ -0.27
LTBR-208ENST00000541005 CD160O95971 181 aa13.39□□□□□ -0.27
LTBR-208ENST00000541005 IL1R2P27930 398 aa13.39□□□□□ -0.27
LTBR-208ENST00000541005 SLC8A1P32418 973 aa13.39□□□□□ -0.27
LTBR-208ENST00000541005 ACSL1P33121 698 aa13.39□□□□□ -0.27
LTBR-208ENST00000541005 ACVRL1P37023 503 aa13.39□□□□□ -0.27
LTBR-208ENST00000541005 PSMD8P48556 350 aa13.39□□□□□ -0.27
LTBR-208ENST00000541005 HCAR3P49019 387 aa13.39□□□□□ -0.27
LTBR-208ENST00000541005 YBEYP58557 167 aaPredicted RBP13.39□□□□□ -0.27
LTBR-208ENST00000541005 POLD3Q15054 466 aaPredicted RBP13.39□□□□□ -0.27
LTBR-208ENST00000541005 DPYSL2Q16555 572 aa13.39□□□□□ -0.27
LTBR-208ENST00000541005 CA9Q16790 459 aa13.39□□□□□ -0.27
LTBR-208ENST00000541005 PARP15Q460N3 678 aa13.39□□□□□ -0.27
LTBR-208ENST00000541005 ACCSLQ4AC99 568 aa13.39□□□□□ -0.27
LTBR-208ENST00000541005 WDR45BQ5MNZ6 344 aa13.39□□□□□ -0.27
LTBR-208ENST00000541005 SYCP2LQ5T4T6 812 aa13.39□□□□□ -0.27
LTBR-208ENST00000541005 TCEAL6Q6IPX3 200 aa13.39□□□□□ -0.27
LTBR-208ENST00000541005 SLC23A3Q6PIS1 610 aa13.39□□□□□ -0.27
LTBR-208ENST00000541005 LINGO4Q6UY18 593 aa13.39□□□□□ -0.27
LTBR-208ENST00000541005 GAS2L3Q86XJ1 694 aa13.39□□□□□ -0.27
LTBR-208ENST00000541005 PLPP6Q8IY26 295 aa13.39□□□□□ -0.27
LTBR-208ENST00000541005 AADATQ8N5Z0 425 aa13.39□□□□□ -0.27
LTBR-208ENST00000541005 PCDH20Q8N6Y1 951 aaKnown RBP13.39□□□□□ -0.27
LTBR-208ENST00000541005 C12orf50Q8NA57 414 aaPredicted RBP13.39□□□□□ -0.27
LTBR-208ENST00000541005 ATP11CQ8NB49 1132 aa13.39□□□□□ -0.27
LTBR-208ENST00000541005 OR2A12Q8NGT7 310 aa13.39□□□□□ -0.27
LTBR-208ENST00000541005 CEP76Q8TAP6 659 aa13.39□□□□□ -0.27
LTBR-208ENST00000541005 TEKT4Q8WW24 435 aa13.39□□□□□ -0.27
LTBR-208ENST00000541005 CTNNBL1Q8WYA6 563 aaPredicted RBP13.39□□□□□ -0.27
LTBR-208ENST00000541005 TCEAL3Q969E4 200 aa13.39□□□□□ -0.27
LTBR-208ENST00000541005 ISG20Q96AZ6 181 aaKnown RBP13.39□□□□□ -0.27
LTBR-208ENST00000541005 RMDN1Q96DB5 314 aa13.39□□□□□ -0.27
LTBR-208ENST00000541005 CCDC114Q96M63 670 aa13.39□□□□□ -0.27
LTBR-208ENST00000541005 KCTD15Q96SI1 283 aaPredicted RBP13.39□□□□□ -0.27
LTBR-208ENST00000541005 CHP1Q99653 195 aa13.39□□□□□ -0.27
LTBR-208ENST00000541005 SPON2Q9BUD6 331 aa13.39□□□□□ -0.27
LTBR-208ENST00000541005 BTBD1Q9H0C5 482 aa13.39□□□□□ -0.27
LTBR-208ENST00000541005 DEF6Q9H4E7 631 aa13.39□□□□□ -0.27
LTBR-208ENST00000541005 SMOC1Q9H4F8 434 aa13.39□□□□□ -0.27
LTBR-208ENST00000541005 DHX35Q9H5Z1 703 aaKnown RBP13.39□□□□□ -0.27
LTBR-208ENST00000541005 NHEJ1Q9H9Q4 299 aaPredicted RBP13.39□□□□□ -0.27
LTBR-208ENST00000541005 GPATCH2LQ9NWQ4 482 aa13.39□□□□□ -0.27
LTBR-208ENST00000541005 FBXL12Q9NXK8 326 aa13.39□□□□□ -0.27
LTBR-208ENST00000541005 SERGEFQ9UGK8 458 aa13.39□□□□□ -0.27
LTBR-208ENST00000541005 PCSK1NQ9UHG2 260 aa13.39□□□□□ -0.27
LTBR-208ENST00000541005 LCMT1Q9UIC8 334 aa13.39□□□□□ -0.27
LTBR-208ENST00000541005 PPM1HQ9ULR3 514 aa13.39□□□□□ -0.27
LTBR-208ENST00000541005 LAMA1P25391 3075 aa13.38□□□□□ -0.27
LTBR-208ENST00000541005 EEF2KO00418 725 aaKnown RBP13.38□□□□□ -0.27
LTBR-208ENST00000541005 SLC7A4O43246 635 aa13.38□□□□□ -0.27
LTBR-208ENST00000541005 KDELR3O43731 214 aa13.38□□□□□ -0.27
LTBR-208ENST00000541005 AKR1B10O60218 316 aa13.38□□□□□ -0.27
LTBR-208ENST00000541005 H2AFZP0C0S5 128 aa13.38□□□□□ -0.27
LTBR-208ENST00000541005 TMEM253P0C7T8 217 aa13.38□□□□□ -0.27
LTBR-208ENST00000541005 GOT1P17174 413 aa13.38□□□□□ -0.27
LTBR-208ENST00000541005 DRD3P35462 400 aa13.38□□□□□ -0.27
LTBR-208ENST00000541005 ZNF75DP51815 510 aa13.38□□□□□ -0.27
LTBR-208ENST00000541005 SLC25A11Q02978 314 aaKnown RBP13.38□□□□□ -0.27
LTBR-208ENST00000541005 DPYSQ14117 519 aa13.38□□□□□ -0.27
LTBR-208ENST00000541005 DUOXA1Q1HG43 343 aa13.38□□□□□ -0.27
LTBR-208ENST00000541005 AASDHQ4L235 1098 aaPredicted RBP13.38□□□□□ -0.27
LTBR-208ENST00000541005 BOLA3Q53S33 107 aa13.38□□□□□ -0.27
LTBR-208ENST00000541005 TRIM61Q5EBN2 209 aa13.38□□□□□ -0.27
LTBR-208ENST00000541005 FAM46CQ5VWP2 391 aa13.38□□□□□ -0.27
LTBR-208ENST00000541005 IL31Q6EBC2 164 aa13.38□□□□□ -0.27
LTBR-208ENST00000541005 RFX8Q6ZV50 586 aa13.38□□□□□ -0.27
LTBR-208ENST00000541005 H2AFVQ71UI9 128 aa13.38□□□□□ -0.27
LTBR-208ENST00000541005 FAM124AQ86V42 546 aa13.38□□□□□ -0.27
LTBR-208ENST00000541005 DEFB119Q8N690 84 aa13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms